High-Content Imaging

The ImageXpress Micro Confocal is in CCSR-0116

Molecular Devices ImageXpress Micro Confocal

We were awarded the NIH Shared Instrumentation Grant (S10OD026899) for an upgraded high-content automated cellular imaging and analysis machine; the Molecular Devices ImageXpress Micro Confocal  (datasheet, Full Brochure) with live-cell, fluidics, transmitted light and confocal capabilities. We can now image 3D objects (resources) in an automated high-throughput fashion. We can image nearly any fluorophore with our collection of Semrock filters. See below for our filter configurations. Please reference the HTSKC and the SIG S10OD026899 when publishing papers that utilized the IXM Confocal.

Please contact us for information on the IXMicro Confocal. For key card access to the IXMicro Confocal room (CCSR-0116) use iLabs.

iLabs IXM Confocal Schedule (click here to schedule training)
View only Calendar for non-registered users

ImageXpress Micro Confocal

Features and Capabilities of the ImageXpress Micro Confocal

  • The IXMicro Confocal contains a fully automated inverted epifluorescence microscope --  User Guide
  •     Capable of scanning a 6-, 24-, 48-, 96- or 384-well microplates, slides or any other microplate sized container.
  •     Can image an entire 384-well plate with multiple fluorescent images in a few minutes.
  • Can rapidly quantify morphological properties through the MetaXpress analysis software (Datasheet) -- Analysis Guide using up to 36 cores with the PowerCore Server.
  • Our current ImageXpress Micro Confocal configuration permits the visualization of both fixed cells and live cells, as well as 3D objects such as organoids in matrigel, spheroids, and small organisms such as C. elegans, zebrafish, and Drosophila embryos.
  •     The instrument has a temperature-, humidity-, and carbon dioxide-controlled chamber.
  •     Dual disk unit allowing for 3 imaging modes 
  •         A) 60 micron pinhole disk for basic confocal requirements
  •         B) 50 micron slit for high-throughput confocal requirements
  •         C) Widefield (non-confocal) imaging mode
  •     Integrated Fluidics for imaging real time kinetic events, such as channel activation, providing for simultaneous dispense and imaging.
  • Can image non-fluorescent cells/objects with the transmitted light option
  • Fully integrated to an external automated incubator (Thermo Cytomat 2C, 42 plates, Datasheet) to permit long-term or large-scale studies of cellular events via a robotic plate stacker (Precise Automation PF400 Microplate Handler, Datasheet, Green Button Go Automation Software, Datasheet, User Guide) thereby increasing the throughput of this workstation.
  • Training provided by HTS @ The Nucleus staff sign up here; iLabs IXMicro Confocal Schedule
  • Two MetaXpress analysis computers Analysis Computer1, Analysis Computer2 also located in CCSR-0116
  • Prior to training, contact Chris Caridi (x5-6002) to discuss what your imaging parameters. 
DataSheet 
Angiogenesis tube formationCell Cycle
Cell HealthCell Proliferation HT
Cell Scoring/multiwavelengthCount Nuclei
GranularityLive/Dead
MicronucleiMitotic Index
Monopole DetectionNeurite Outgrowth
TransfluorTransfluor HT
Translocation — basic, enhanced,Multi-wavelength, HT, Nuclear HT
3D Analysis OptionCurve fitting
Transmitted Light SegmentationAutoQuant Widefield 3D Deconvolution

Preferred Imaging Plates

Wells

Vendor

Catalog Number

Objectives

24

Corning/Costar

 

All

96

Greiner

655090

All

96

Corning/Costar*

3904 (which do I have?)

All

384

Greiner

781091

All

384

Corning/Costar*

3764 or 4518 or 4581

All

 

*Secondary Preference

  

Technical Information

ObjectivesAura II Light EngineEmission FiltersDichroics
2X 0.1 Plan Apo, 8.5mm WD360_28nm*447_60nm409
4X 0.2 Plan Apo 20mm WD475_28nm*538_40nm506
10X 0.45 Plan Apo 4mm WD555_28nm*593_40nm562
20X 0.75 Plan Apo 1mm WD575_35nm*624_40nm593
40X 0.95 Plan Apo 0.25-0.16mm WD631_28nm*692_40nm660
60X 0.95 Plan Apo 0.21-0.11mm WD*Approximate still TBD  
Oil Objectives   
40X 1.3 Plan Fluor Oil 0.24mm WD   
60X 1.4 Plan Apo 0.13 WD   
100X 1.3 Plan Fluor 0.16mm WD   

Filter Sets

Label NameExcitationEmissionDichroic
DAPI360_28nm447_60nm409
FITC475_28nm538_40nm506
TRITC/Cy3555_28nm593_40nm562
TxRED575_35nm624_40nm593
Cy5631_28nm692_40nm660
FM 1-43475_28nm593_40nm562
    

The HTS labs are located in the Sarafan ChEM-H Building Room W008 and CCSR, Room 0133-North Wing, between the Transgenic Research Center and the Stanford Genomics Facility.

For Directions to the HTS labs, see our Contact page.

HTS iLAB Page for HTS registration, room access, and to see equipment Calendars.