Program Trainees
The M&I Training Program is comprised of research trainees across the microbiology and immunology department promoting excellence in scientific investigation. The program complements the training received by each graduate student and postdoctoral scholar in the department.
2023
Jasmine Arunachalam
Graduate Student
- Advisor: Jennifer Bando
- Interest: the regulation of immunoglobulin gamma (IgG) transport in neonatal mice
Anushweta Asthana, PhD
Postdoctoral Fellow
- Advisor: Peter Jackson
- Research: ciliary mechanisms of SARS-CoV-2 viral entry in airway epithelial cells
2022
Emma Esterman
Graduate Student
- Advisor: Jan Carette
- Interest: the molecular mechanisms by which proteins in the galectin family influence enterovirus infection
Emma Guiberson, PhD
- Advisor: Justin Sonnenburg
- Research: investigating mechanisms of microbiota-host interaction using mass spectrometry
Melissa Steele-Ogus, PhD
- Advisor: Ellen Yeh
- Research: diatoms of the genus Epithemia, a model for understanding endosymbiotic organellogenesis
Miles Tuncel
Graduate Student
- Advisor: Christine Jacobs-Wagner
- Interest: the etiologic agent of Lyme disease, Borrelia burgdorferi, and the cell biology of the unique glycolipids it incorporates into its membrane
2021
Allison Dupzyk, PhD
- Advisor: Jan Carette
- Research: adeno-associated virus (AAV) entry and AAV viral trafficking throughout the host cell
Savannah Lewis
Graduate Student
- Advisor: Prasanna Jagannathan
- Interest: development of natural immunity to malaria in individuals living in endemic areas
Nicole Tanenbaum
Graduate Student
- Advisor: Jan Carette
- Interest: identifying enterovirus host factors and characterizing the mechanism by which they promote infection
Benjamin Wang, PhD
- Advisor: Denise Monack
- Research: mechanisms of Salmonella persistence within macrophages in systemic mouse tissues
2020
Elisa Caffrey
Graduate Student
- Advisor: Justin Sonnenburg
- Interest: gut-brain-axis, food fermentation and food-gut microbiome-host interactions
Elysse Grossi-Soyster
Graduate Student
- Advisor: Peter Sarnow (primary), David Schneider (co-mentor)
- Interest: virus-derived circular RNA molecules and their potential contributions to viral pathogenesis
Joy McKenna, PhD
- Advisor: Denise Monack
- Research: focus on how bacterial pathogens, such as Salmonella and Shigella, interact with our cells to cause disease
Ben Waldman, PhD
- Advisor: Jan Carette
- Research: host-pathogen interactions, with a particular focus on species-specific defense systems and viral antagonism of those systems
Lily Xu
Graduate Student
- Advisor: Jan Carette/Wah Chiu
- Interest: the intersection of virology and structural biology, using single-particle cryo-EM to investigate viral processes in flaviviruses
2019
Isabel Delwel
Graduate Student
- Advisor: Erin Mordecai
- Interest: evolution and host virus interactions of positive RNA viruses
Mary DeFeo
Graduate Student
- Advisor: Dylan Dodd
- Interest: host and microbial factors that affect heparan sulfate levels and neutrophil antifungal activity in vulvovaginal candidiasis
Leah Guthrie, PhD
- Advisor: Justin Sonnenburg
- Research: deciphering microbial hydroxycinnamate metabolism and impact on uremic illness
Youlim Kim
Graduate Student
- Advisor: Manuel Amieva
- Interest: Helicobacter pylori colonization and migration in the gastric epithelium
Matt Olm, PhD
- Advisor: Justin Sonnenburg
- Research: the human microbiome and fine-scale microbial population genetics
2018
Phylicia Aaron, PhD
- Advisor: Elizabeth Egan
- Research: Salmonella enterica serovar-specific biology in the murine gastrointestinal tractRNA virology and disease tolerance and resistance
Oscar Diaz
Graduate Student
- Advisor: Denise Monack
- Interest: immune signaling and the bile acid landscape during Salmonella Typhimurium Infecto
Meagan Hamblin
Graduate Student
- Advisor: Denise Monack
- Interest: Salmonella enterica serovarspecific molecular host interactions
Alma Mendoza
Graduate Student
- Advisor: John Boothroyd
- Interest: translocation of folded proteins across the parasitophorous vacuole membrane
Kimberly Perez, PhD
- Advisor: Juliana Idoyaga
- Research: function of dendritic cell subsets during health and disease
2017
Sarah Ruddle
Graduate Student
- Advisor: Denise Monack
- Interest: Salmonella typhimurium host interaction
Krystal Thomas-White, PhD
- Advisor: Denise Monack
- Research: mechanisms of microbiome-host interactions
James Zengel, PhD
- Advisor: Jan Carette
- Research: the role of host factors that affect the tropism and transduction efficiency of adeno-associated virus (AAV) in vivo, focusing on the role of the AAV receptor (AAVR)
Former Trainees
Trainee |
Advisor |
Position |
Kimberly Vasquez, PhD (2022) |
Kerwyn Huang |
Recent Graduate, currently interviewing |
Abel Ferrel, PhD (2022) |
John Boothroyd |
Scientist at Evotec/Genentech |
Alicja Cygan, PhD (2021) |
John Boothroyd |
Senior Scientist at Merck |
Terence Theisen, PhD (2021) |
John Boothroyd |
Scientist at Nanostring Technologies |
Susan Brewer, PhD (2021) |
Denise Monack |
Postdoctoral Scholar at University of Washington |
Kali Pruss, PhD (2020) |
Justin Sonnenburg |
Postdoctoral Researcher at Washington University |
Michelle Lissner, PhD (2020) |
David Schneider |
Postdoctoral Researcher at Benaroya Research Institute |
Will Van Treuren, PhD (2020) |
Justin Sonnenburg |
Chief Scientific Officer and Co-Founder at Interface Biosciences |
Kyler Lugo, PhD (2020) |
Denise Monack |
Scientist at Assembly Biosciences |
Rachel Hagey, PhD (2018) |
Jeffrey Glenn |
Research Scientist at Stanford University |
Katherine Cumnock, PhD (2018) |
David Schneider |
Project Leader at Boston Consulting Group |
Jillian Lund, PhD (2017) |
Peter Sarnow |
Researcher |
Caleb Marceau, PhD (2017) |
Jan Carette |
Sr Research Scientist, Clinical Virology at Gilead |
Margaret Nakamoto, PhD (2017) |
John Boothroyd |
Early Access Program Leader at Scale Biosciences |
Elizabeth Shepherd (Stanley), PhD (2017) |
Justin Sonnenburg |
Co-Founder, Head of People at Novome Biotechnologies |
Dinah Proctor, PhD (2016) |
David Relman |
Postdoctoral Fellow at US National Institutes of Health |
Julie Huang, PhD (2016) |
Manuel Amieva |
Research Scientist at Caribou Biosciences |
Sarah Carden, PhD (2016) |
Denise Monack |
Sr Scientist, Immuno-oncology at Evelo Biosciences |
Mara Pavel-Dinu, PhD (2015) |
Helen Blau/Matthew Porteus |
Instructor, Pediatrics Dept at Stanford University |
Sara Bird, PhD (2015) |
Karla Kirkegaard |
Senior Product Manager at Natera |
Harris Feinberg, PhD (2015) |
Garry Nolan |
President at EBSM Consulting |
David Halladin, PhD (2014) |
Julie Theriot |
Business Intelligence Engineer at Third Sector Intelligence |
Jonathan Lynch, PhD (2014) |
Justin Sonnenburg |
Assistant Project Scientist at UCLA |
Jose Antonio Gomez, PhD (2013) |
Karla Kirkegaard |
Postdoctoral Researcher at UC Davis |
Erica Cox, PhD (2013) |
Peter Sarnow |
Director at Denali Therapeutics |
Justine Pompey, PhD (2012) |
Upinder Singh |
Laboratory Leadership Service Fellow at CDC |
Moria Chambers, PhD (2012) |
David Schneider |
Assistant Professor of Biology at Bucknell University |
Leigh Baxt, PhD (2010) |
Upinder Singh |
Sr Associate Director, Biology at Tri-Institutional Therapeutics Discovery Institute |
Susan Vleck, PhD (2010) |
Ann Arvin |
Asst Director, EH&S Laboratory Chemical & Physical Safety Program at Stanford University |
Gwen Liu, PhD (2010) |
Chang-Zheng Chen |
Sr Manager, Medical Writing at Vir Biotechnology |
Robin Trujillo, PhD (2010) |
Chang-Zheng Chen |
COO at E and M Labs |
Tamara Doukas, PhD (2009) |
Peter Sarnow |
Chief Scientific Officer at Lookout Health |
Trever Burgon, PhD (2009) |
Karla Kirkegaard |
Vice President at QURE Healthcare |
Janelle Ayres, PhD (2009) |
David Schneider |
Professor/Lab Head at Salk Institute for Biological Studies |