Center Publications

Publications authored and co-authored by Stanford Medicine Children’s Health Center for IBD and Celiac Disease members are listed below by year. Authors are indicated in bold. Members have multiple affiliations, including Stanford University School of Medicine, other Stanford University schools and programs (Graduate School of Business, Engineering, Bioengineering, Arts & Sciences), Stanford Hospital & Clinics, Lucile Packard Children's Hospital at Stanford and the Veterans' Affairs Palo Alto Health Care System. The Institute promotes interdisciplinary collaboration among clinicians, engineers, basic, translational, and social scientists and researchers, to transform the care of children with IBD and celiac disease through leading-edge clinical care and innovative research.

2024 Publications

1. Gerrick ER, Zlitni S, West PT, Carter MM, Mechler CM, Olm MR, Caffrey EB, Li JA, Higginbottom SK, Severyn CJ, Kracke F, Spormann AM, Sonnenburg JL, Bhatt AS, Howitt MR. Metabolic diversity in commensal protists regulates intestinal immunity and trans-kingdom competition. Cell. 2023 Dec 8:S0092-8674(23)01271-0. doi: 10.1016/j.cell.2023.11.018. Epub ahead of print. PMID: 38096822.

2023 Publications

1. Braun T, Sosnovski KE, Amir A, BenShoshan M, VanDussen KL, Karns R, Levhar N, Abbas-Egbariya H, Hadar R, Efroni G, Castel D, Avivi C, Rosen MJ, Grifiths AM, Walters TD, Mack DR, Boyle BM, Ali SA, Moore SR, Schirmer M, Xavier RJ, Kugathasan S, Jegga AG, Weiss B, Mayer C, Barshack I, Ben-Horin S, Ulitsky I, Beucher A, Ferrer J, Hyams JS, Denson LA, Haberman Y. Mucosal transcriptomics highlight lncRNAs implicated in ulcerative colitis, Crohn's disease, and celiac disease. JCI Insight. 2023 Jul 24;8(14):e170181. doi: 10.1172/jci.insight.170181. PMID: 37261910.

2. Ge TJ, Rahimzadeh VN, Mintz K, Park WG, Martinez-Martin N, Liao JC, Park SM. Passive monitoring by smart toilets for precision health. Sci Transl Med. 2023 Feb;15(681):eabk3489. doi: 10.1126/scitranslmed.abk3489. Epub 2023 Feb 1. PMID: 36724240; PMCID: PMC10311987.

3. Hickey JW, Becker WR, Nevins SA, Horning A, Perez AE, Zhu C, Zhu B, Wei B, Chiu R, Chen DC, Cotter DL, Esplin ED, Weimer AK, Caraccio C, Venkataraaman V, Schürch CM, Black S, Brbić M, Cao K, Chen S, Zhang W, Monte E, Zhang NR, Ma Z, Leskovec J, Zhang Z, Lin S, Longacre T, Plevritis SK, Lin Y, Nolan GP, Greenleaf WJ, Snyder M. Organization of the human intestine at single-cell resolution. Nature. 2023 Jul;619(7970):572-584. doi: 10.1038/s41586-023-05915-x. Epub 2023 Jul 19. PMID: 37468586; PMCID: PMC10356619.

4. Jain S, Pei L, Spraggins JM, Angelo M, Carson JP, Gehlenborg N, Ginty F, Gonçalves JP, Hagood JS, Hickey JW, Kelleher NL, Laurent LC, Lin S, Lin Y, Liu H, Naba A, Nakayasu ES, Qian WJ, Radtke A, Robson P, Stockwell BR, Van de Plas R, Vlachos IS, Zhou M; HuBMAP Consortium; Börner K, Snyder MP. Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP). Nat Cell Biol. 2023 Jul 19. doi: 10.1038/s41556-023-01194-w. Epub ahead of print. PMID: 37468756.

5. Kappelman MD, Wohl DA, Herfarth HH, Firestine AM, Adler J, Ammoury RF, Aronow JE, Bass DM, Bass JA, Benkov K, Tobi CB, Boccieri ME, Boyle BM, Brinkman WB, Cabera JM, Chun K, Colletti RB, Dodds CM, Dorsey JM, Ebach DR, Entrena E, Forrest CB, Galanko JA, Grunow JE, Gulati AS, Ivanova A, Jester TW, Kaplan JL, Kugathasan S, Kusek ME, Leibowitz IH, Linville TM, Lipstein EA, Margolis PA, Minar P, Molle-Rios Z, Moses J, Olano KK, Osaba L, Palomo PJ, Pappa H, Park KT, Pashankar DS, Pitch L, Robinson M, Samson CM, Sandberg KC, Schuchard JR, Seid M, Shelly KA, Steiner SJ, Strople JA, Sullivan JS, Tung J, Wali P, Zikry M, Weinberger M, Saeed SA, Bousvaros A. Comparative Effectiveness of Anti-TNF in Combination With Low-Dose Methotrexate vs Anti-TNF Monotherapy in Pediatric Crohn's Disease: A Pragmatic Randomized Trial. Gastroenterology. 2023 Jul;165(1):149-161.e7. doi: 10.1053/j.gastro.2023.03.224. Epub 2023 Mar 31. PMID: 37004887; PMCID: PMC10330864.

6. Levitte S, Yarani R, Ganguly A, Martin L, Gubatan J, Nadel HR, Franc B, Gugig R, Syed A, Goyal A, Park KT, Thakor AS. Case Series of Precision Delivery of Methylprednisolone in Pediatric Inflammatory Bowel Disease: Feasibility, Clinical Outcomes, and Identification of a Vasculitic Transcriptional Program. J Clin Med. 2023 Mar 20;12(6):2386. doi: 10.3390/jcm12062386. PMID: 36983386; PMCID: PMC10053508.

7. Solitano V, Facciorusso A, McGovern DPB, Nguyen T, Colman RJ, Zou L, Boland BS, Syversen SW, Jørgensen KK, Ma C, Armuzzi A, Wilson A, Jairath V, Singh S. HLA-DQA1∗05 Genotype and Immunogenicity to Tumor Necrosis Factor-α Antagonists: A Systematic Review and Meta-analysis. Clin Gastroenterol Hepatol. 2023 Apr 13:S1542-3565(23)00270-7. doi: 10.1016/j.cgh.2023.03.044. Epub ahead of print. PMID: 37061107.

8. Whaley KG, Xiong Y, Karns R, Hyams JS, Kugathasan S, Boyle BM, Walters TD, Kelsen J, LeLeiko N, Shapiro J, Waddell A, Fox S, Bezold R, Bruns S, Widing R, Haberman Y, Collins MH, Mizuno T, Minar P, D'Haens GR, Denson LA, Vinks AA, Rosen MJ. Multicenter Cohort Study of Infliximab Pharmacokinetics and Therapy Response in Pediatric Acute Severe Ulcerative Colitis. Clin Gastroenterol Hepatol. 2023 May;21(5):1338-1347. doi: 10.1016/j.cgh.2022.08.016. Epub 2022 Aug 27. PMID: 36031093; PMCID: PMC9968822.

2022 Publications

1. Clarkston K, Karns R, Jegga AG, Sharma M, Fox S, Ojo BA, Minar P, Walters TD, Griffiths AM, Mack DR, Boyle B, LeLeiko NS, Markowitz J, Rosh JR, Patel AS, Shah S, Baldassano RN, Pfefferkorn M, Sauer C, Kugathasan S, Haberman Y, Hyams JS, Denson LA, Rosen MJ. Targeted Assessment of Mucosal Immune Gene Expression Predicts Clinical Outcomes in Children with Ulcerative Colitis. J Crohns Colitis. 2022 Nov 23;16(11):1735-1750. doi: 10.1093/ecco-jcc/jjac075. PMID: 35665804; PMCID: PMC9683081.

2. Duryee MJ, Ahmad R, Eichele DD, Hunter CD, Mitra A, Talmon GA, Singh S, Smith LM, Rosen MJ, Dhawan P, Thiele GM, Singh AB. Identification of Immunoglobulin G Autoantibody Against Malondialdehyde-Acetaldehyde Adducts as a Novel Serological Biomarker for Ulcerative Colitis. Clin Transl Gastroenterol. 2022 Apr 1;13(4):e00469. doi: 10.14309/ctg.0000000000000469. PMID: 35287144; PMCID: PMC9038499.

3. Hsu D, Zhang KY, Rubesova E, Bruzoni M, Khavari N, Goyal A. Superior Mesenteric Artery Syndrome in an Adolescent With Anorexia and Suspected Pancreatitis. JPGN Rep. 2022 Mar 17;3(2):e194. doi: 10.1097/PG9.0000000000000194. PMID: 37168901; PMCID: PMC10158292.

4. Kaplan HC, Opipari-Arrigan L, Yang J, Schmid CH, Schuler CL, Saeed SA, Braly KL, Chang F, Murphy L, Dodds CM, Nuding M, Liu H, Pilley S, Stone J, Woodward G, Yokois N, Goyal A, Lee D, Yeh AM, Lee P, Gold BD, Molle-Rios Z, Zwiener RJ, Ali S, Chavannes M, Linville T, Patel A, Ayers T, Bassett M, Boyle B, Palomo P, Verstraete S, Dorsey J, Kaplan JL, Steiner SJ, Nguyen K, Burgis J, Suskind DL; ImproveCareNow Pediatric IBD Learning Health System. Personalized Research on Diet in Ulcerative Colitis and Crohn's Disease: A Series of N-of-1 Diet Trials. Am J Gastroenterol. 2022 Jun 1;117(6):902-917. doi: 10.14309/ajg.0000000000001800. Epub 2022 Apr 20. PMID: 35442220.

5. Kerur B, Fiedler K, Stahl M, Hyams J, Stephens M, Lu Y, Pfefferkorn M, Alkhouri R, Strople J, Kelsen J, Siebold L, Goyal A, Rosh JR, LeLeiko N, Van Limbergen J, Guerrerio AL, Maltz RM, Karam L, Crowley E, Griffiths AM, Heyman MB, Deneau M, Benkov K, Noe J, Moulton D, Pappa H, Galanko J, Snapper S, Muise AM, Kappelman MD, Benchimol EI. Utilization of Antitumor Necrosis Factor Biologics in Very Early Onset Inflammatory Bowel Disease: A Multicenter Retrospective Cohort Study From North America. J Pediatr Gastroenterol Nutr. 2022 Jul 1;75(1):64-69. doi: 10.1097/MPG.0000000000003464. Epub 2022 May 27. PMID: 35622080.

6. Ojo BA, Alake SE, Kaur A, Wong SY, Keirns B, Ritchey JW, Chowanadisai W, Lin D, Clarke S, Smith BJ, Lucas EA. Supplemental wheat germ modulates phosphorylation of STAT3 in the gut and NF-κBp65 in the adipose tissue of mice fed a Western diet. Curr Dev Nutr. 2022 Dec 23;7(1):100023. doi: 10.1016/j.cdnut.2022.100023. PMID: 37181127; PMCID: PMC10100941.

7. Ojo BA, VanDussen KL, Rosen MJ. The Promise of Patient-Derived Colon Organoids to Model Ulcerative Colitis. Inflamm Bowel Dis. 2022 Feb 1;28(2):299-308. doi: 10.1093/ibd/izab161. PMID: 34251431; PMCID: PMC8804507.

8. Rosen MJ. New Role for Fatty Acid Receptor Regulation of Immune Cells to Control Intestinal Inflammation. Gastroenterology. 2022 Jan;162(1):40-42. doi: 10.1053/j.gastro.2021.09.072. Epub 2021 Oct 18. PMID: 34672998.

9. Schumacher MA, Liu CY, Katada K, Thai MH, Hsieh JJ, Hansten BJ, Waddell A, Rosen MJ, Frey MR. Deep Crypt Secretory Cell Differentiation in the Colonic Epithelium Is Regulated by Sprouty2 and Interleukin 13. Cell Mol Gastroenterol Hepatol. 2023;15(4):971-984. doi: 10.1016/j.jcmgh.2022.11.004. Epub 2022 Nov 19. PMID: 36414210; PMCID: PMC9982040.

10. Sessions J, Purington N, McGhee S, Bass D, Wang Y, Goyal A, Khavari N. Subtyping of Eosinophilic Esophagitis Based on Disease Presentation in a pediatric Cohort. J Pediatr Gastroenterol Nutr. 2022 Oct 1;75(4):e67-e74. doi: 10.1097/MPG.0000000000003580. Epub 2022 Jul 28. PMID: 35897130.

11. Sessions J, Purington N, Wang Y, McGhee S, Sindher S, Goyal A, Khavari N. Pediatric eosinophilic esophagitis outcomes vary with co-morbid eczema and pollen food syndrome. Front Allergy. 2022 Sep 2;3:981961. doi: 10.3389/falgy.2022.981961. PMID: 36118171; PMCID: PMC9478188.

12. Sunny J, Fonseca AG, Crim AM, Goyal A, Felipez LM. Hypersensitivity Reaction to Ustekinumab in Pediatric and Young Adult Inflammatory Bowel Disease Patients: A Case Series. JPGN Rep. 2022 Apr 27;3(2):e205. doi: 10.1097/PG9.0000000000000205. PMID: 37168900; PMCID: PMC10158453.

13. Wan L, Yoshikawa A, Eisenstein M, Soh HT. High-Throughput Strategy for Enhancing Aptamer Performance across Different Environmental Conditions. ACS Sens. 2023 Jul 28;8(7):2519-2524. doi: 10.1021/acssensors.2c02106. Epub 2023 Jun 14. PMID: 37314376.

2021 Publications

1. Nicholson MR, Hourigan SK, Conrad M, Goyal A, Jensen K, Kelsen J, Kennedy M, Weatherly M, Kahn SA. Current Challenges in Fecal Microbiota Transplantation for Clostridioides difficile Infection in Children. Am J Gastroenterol. 2021 Sep 1;116(9):1954-1956. doi: 10.14309/ajg.0000000000001350. PMID: 34140459; PMCID: PMC8410642.

2. Wren AA, Maddux MH. Integrated Multidisciplinary Treatment for Pediatric Inflammatory Bowel Disease. Children (Basel). 2021 Feb 23;8(2):169. doi: 10.3390/children8020169. PMID: 33672231; PMCID: PMC7926459.

3. Wren AA, Neiman N, Caruso TJ, Rodriguez S, Taylor K, Madill M, Rives H, Nguyen L. Mindfulness-Based Virtual Reality Intervention for Children and Young Adults with Inflammatory Bowel Disease: A Pilot Feasibility and Acceptability Study. Children (Basel). 2021 May 5;8(5):368. doi: 10.3390/children8050368. PMID: 34063034; PMCID: PMC8147916.

2020 Publications

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