Useful Links

Genomic data analysis tools:

Cancer Cell Line Encyclopedia (Broad institute)

cBioPortal (MSKCC)

Connectivity Map (Broad Institute)

COSMIC (Sanger Institute)


GeneCards (Weizmann Institute)

Genomics of Drug Sensitivity in Cancer (Sanger Institute)

Firehose (Broad Institute)

Human Protein Atlas

International Cancer Genome Consortium (ICGC)

Molecular Signatures Database (Broad Institute)


Oncomine (U Michigan)

Significance Analysis of Microarrays (Stanford)

S.O.U.R.C.E. (Stanford at Princeton)

STRING (protein interactions)

TargetScan (miRNAs) ((Whitehead Institute)

The Cancer Genome Atlas (TCGA) (NIH)

Tissue Microarray Database (TMAD) (Stanford)

UCSC Genome Browser (UCSC)


Collaborators (selected):

Rob West lab (Stanford Pathology)

Matt van de Rijn lab (Stanford Pathology)

Jim Brooks (Stanford Urology)

Rob Tibshirani (Stanford Statistics; Health Research & Policy)


Research Centers and Programs:

Stanford Center for Urologic Genomics