Deisseroth Lab Publications

Primary Research

Jennings, J. H., Kim, C. K., Marshel, J. H., Raffiee, M., Ye, L., Quirin, S., Pak, S., Ramakrishnan, C., Deisseroth, K. (2019). Interacting neural ensembles in orbitofrontal cortex for social and feeding behaviour. Nature. [ PDF ]

Kim YS, Kato HE, Yamashita K, Ito S, Inoue K, Ramakrishnan C, Fenno LE, Evans KE, Paggi JM, Dror RO, Kandori H, Kobilka BK, Deisseroth K. Crystal structure of the natural anion-conducting channelrhodopsin GtACR1. Nature. 2018. PMID: 30158696 [  PDF  ]

Kato HE, Kim YS, Paggi JM, Evans KE, Allen WE, Richardson C, Inoue K, Ito S, Ramakrishnan C, Fenno LE, Yamashita K, Hilger D, Lee SY, Berndt A, Shen K, Kandori H, Dror RO, Kobilka BK, Deisseroth K. Structural mechanisms of selectivity and gating in anion channelrhodopsins. Nature. 2018. PMID: 30158697 [  PDF  ]

Wang Xiao, Allen WE, Wright MA, Sylwestrak EL, Samusik N, Vesuna S, Evans K, Liu C, Ramakrishnan C, Liu J, Nolan GP, Bava FA, Deisseroth K. Three-dimensional intact-tissue sequencing of single-cell transcriptional states. Science. 2018. PMID: 29930089 [  PDF | Supplement | Perspective  ]

Lovett-Barron M, Andalman AS, Allen WE, Vesuna S, Kauvar I, Burns VM, Deisseroth K. Ancestral circuits for the coordinated modulation of brain state. Cell. 2017. PMID: 29103613 [  PDF | S1 (mov) | S1 (mp4) | Highlight | Stanford Medicine | NIMH News | Scope Blog  ]

Review

Gradinaru V, Treweek J, Overton K, Deisseroth K. Hydrogel-tissue chemistry: principles and applications. Annu. Rev. Biophys. 2018. PMID: 29792820 [  PDF  ]

Deisseroth K, Hegemann P. The form and function of channelrhodopsin. Science. 2017. PMID: 28912215 [  PDF  ]


Luo Lab Publications

Primary Research

L. A. DeNardo et al., Temporal evolution of cortical ensembles promoting remote memory retrieval. Nat. Neurosci. (2019) [ PDF ]

Beier KT, Gao XJ, Xie S, DeLoach KE, Malenka RC, Luo L. (2019) Topological Organization of Ventral Tegmental Area Connectivity Revealed by Viral-Genetic Dissection of Input-Output Relations. Cell Rep. 2019 PMID: 30605672. [ PDF ]

Ren J, Friedmann D, Xiong J, Liu CD, Ferguson BR, Weerakkody T, DeLoach KE, Ran C, Pun A, Sun Y, Weissbourd B, Neve RL, Huguenard J, Horowitz MA, Luo L. (2018). Anatomically Defined and Functionally Distinct Dorsal Raphe Serotonin Sub-systems. Cell. 2018. PMID: 30146164 [ PDF | Stanford News ] 

Kohl J, Babayan BM, Rubinstein ND, Autry AE, Marin-Rodriguez B, Kapoor V, Miyamishi K, Zweifel LS, Luo L, Uchida N, Dulac C. (2018) Functional circuit architecture underlying parental behaviour. Nature. 2018 PMID: 29643503 [ PDF ]

Tasaka GI, Guenthner CJ, Shalev A, Gilday O, Luo L, Mizrahi A. Genetic tagging of active neurons in auditory cortex reveals maternal plasticity of coding ultrasonic vocalizations. Nat Comm. 2018. PMID: 29491360 [ PDF ]

Girasole AE, Lum MY, Nathaniel D, Bair-Marshall CJ, Guenthner CJ, Luo L, Kreitzer AC, Nelson AB. A subpopulation of striatal neurons mediates levodopa-induced dyskinesia. Neuron. 2018. PMID: 29398356 [ PDF ]

Li H, Horns F, Wu B, Xie Q, Li J, Li T, Luginbuhl DJ, Quake SR, Luo L. Classifying Drosophila olfactory projection neuron subtypes by single-cell RNA sequencing. Cell. 2017. PMID: 29149607 [ PDF ]

Allen WE, DeNardo LA, Chen MZ, Liu CD, Loh KM, Fenno LE, Ramakrishnan C, Deisseroth K, Luo L. Thirst-associated median preoptic neurons encode an aversive motivational drive. Science. 2017. PMID: 28912243 [ PDF ]

Review

Luo L, Callaway EM, Svoboda K. Genetic dissection of neural circuits: a decade of progress. Neuron. 2018. PMID: 29772206 [ PDF ]


Callaway Lab Publications

Review

Luo L, Callaway EM, Svoboda K. Genetic dissection of neural circuits: a decade of progress. Neuron. 2018. PMID: 29772206 [ PDF ]


Schnitzer Lab Publications

Instrumentation for multiphoton Ca2+ imaging

Wang T, Ouzounov DG, Wu C, Horton NG, Zhang B, Wu C-H, Zhang Y, Schnitzer MJ, Xu C. Three-photon imaging of mouse brain structure and function through the intact skull. Nature Methods. 2018. PMID: 30202059 [ PDF ]

Kondo T, Saito R, Otaka M, Yoshino-Saito K, Yamanaka A, Yamamori T, Watakabe A, Mizukami H, Schnitzer MJ, Tanaka KF, Ushiba J, Okano H (2018) Calcium Transient Dynamics of Neural Ensembles in the Primary Motor Cortex of Naturally Behaving Monkeys. Cell Rep. 24(8):2191-2195.e4. [ PDF ]

Voltage Imaging

Kannan M, Vasan G, Huang C, Haziza S, Li JZ, Inan H, Schnitzer MJ, Pieribone VA (2018) Fast, in vivo voltage imaging using a red fluorescent indicator. Nat Methods. doi: 10.1038/s41592-018-0188-7. [ PDF ]

Fly Robotics

Huang C, Maxey JR, Sinha S, Savall J, Gong Y, Schnitzer MJ. Long-term optical brain imaging in live adult fruit flies. Nature Communications. 2018. [ PDF ]