Ronald W. Davis: Publications & Patents through 2020

1. Rapid, Informative Diagnostic Assay For Influenza Viruses Including H5N1.
   Davis, RW. Diamond, L. Kumm, J. Pourmand, N. (2009). [Stanford Reference S06-155], [USPTO]
2. Coaxial Nanoneedle.
   Esfandyarpour, H. Parizi, K.B. Davis, R.W. (2008). [Stanford Docket S06-072]
3. Activated Nanopores for Biochemical Analysis.
   Davis, RW. Ronaghi, M. Talasaz, A. H. (2007). [Stanford Docket S03-098]
4. Needle-Sequencing: Novel Ultra Sensitive Gene Sequencing Platform.
   Esfandyarpour, H. Davis, R.W. (2006). [Stanford Docket S06-080]
5. Clinical and Genomic/Proteomic Data Integration and QA/QC Analysis System.
   Davis, RW. Ji, H. Kumm, J. (2004). [Stanford Reference S04-255].
   
6. Charge Alternation DNA Detection System.
   Pourmand, N., Karhanek, M., Davis, R.W. U.S. PTO No. 60/627,192. Filed Nov. 12, 2004 [Stanford Docket S04-291]
7. Reciprocal Hemizygous Scanning (RHS).
   Davis, R.W., McCusker, J., Steinmetz L.M., (2001). [Stanford DocketS 01-117]
8. Concatenated Oligonucleotide Primer Synthesis for PCR.
   Davis, R.W., Hardenbol P., Willis T. (2000). [Stanford Docket S00-044]

1. Statistics and its interface. 
   Zhang Y, Ouyang Z, Qian W, Smith RD, Wong WH, Davis RW. International Press. 2020 July 31;13(4):465-474. doi: https//dx.doi.org/10.4310/SII.2020.v13.n4.a4.
2. Community members in activated sludge as determined by molecular probe technology. 
   Xu W, Brand VR, Suresh S, Jensen MA, Davis RW, Criddle CS, St.Onge RP, Hyman RW. 2020 January 1;168(115104). doi: https://doi.org/10.1016/j.watres.2019.115104.
3. Identification of polyketide biosynthetic gene clusters that harbor self-resistance target genes.
   Vandova GA, Nivina A, Khosla Ca, Davis RW, Fisher CR, Hillenmeyer ME. bioRxiv. 2020 June 2. doi: https://doi.org/10.1101/2020.06.01.128595.
4. Automated motion tracking and data extraction for red blood cell biomechanics.
   Kumar A, Schmidt BR, Sanchez ZAC, Yazar F, Davis RW, Ramasubramanian AK, Saha AK.Curr Protoc Cytom. 2020 Jun;93(1):e75. doi:10.1002/cpcy.75.
5. The IDO metabolic trap hypothesis for the etiology of ME/CFS.
   Kashi AA, Davis RW, Phair RD. Diagnostics (Basel). 2019 Jul 26;9(3). pii: E82. doi: 10.3390/diagnostics9030082.
6. A nanoelectronics-blood-based diagnostic biomarker for myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS).
   Esfandyarpour R, Kashi A, Nemat-Gorgani M, Wilhelmy J, Davis RW. Proc Natl Acad Sci U S A. 2019 May 21;116(21):10250-10257. doi: 10.1073/pnas.1901274116. Epub 2019 Apr 29.
7. Red blood cell deformability is diminished in patients with Chronic Fatigue Syndrome.
   Saha AK, Schmidt BR, Wilhelmy J, Nguyen V, Abugherir A, Do JK, Nemat-Gorgani M, Davis RW, Ramasubramanian AK. Clin Hemorheol Microcirc. 2019;71(1):113-116. doi: 10.3233/CH-180469.
8. A biosensor-based approach reveals links between efflux pump expression and cell cycle regulation in pleiotropic drug resistance of yeast.
   Li J, Kolberg K, Schlecht U, St Onge RP, Aparicio AM, Horecka J, Davis RW, Hillenmeyer ME, Harvey CJB. J Biol Chem. 2019 Jan 25;294(4):1257-1266. doi: 10.1074/jbc.RA118.003904. Epub 2018 Dec 4.
9. Combining newborn metabolic and DNA analysis for second-tier testing of methylmalonic acidemia.
   Peng G, Shen P, Gandotra N, Le A, Fung E, Jelliffe-Pawlowski L, Davis RW, Enns GM, Zhao H, Cowan TM, Scharfe C. Genet Med. 2018 Sep 13. doi: 10.1038/s41436-018-0272-5.
10. Multiplexed precision genome editing with trackable genomic barcodes in yeast.
    Roy KR, Smith JD, Vonesch SC, Lin G, Tu CS, Lederer AR, Chu A, Suresh S, Nguyuen M, Horecka J, Tripathi A, Burnett WT, Morgan MA, Schulz J, Orsley KM, Wei W, Aiyar RS, Davis RW, Bankaitis VA, Haber JE, Salit ML, St Onge RP, Steinmetz LM. Nat Biotechnol. 2018 Jul;36(6):512-520. doi: 10.1038/nbt.4137. Epub 2018 May 7.
11. HEx: A heterologous expression platform for the discovery of fungal natural products.
    Harvey CJB, Tang M, Schlecht U, Horecka J, Fischer CR, Lin HC, Li J, Naughton B, Cherry J, Miranda M, Li YF, Chu AM, Hennessy JR, Vandova GA, Inglis D, Aiyar RS, Steinmetz LM, Davis RW, Medema MH, Sattely E, Khosla C, St Onge RP, Tang Y, Hillenmeyer ME. Sci Adv. 2018 Apr 11;4(4):eaar5459. doi: 10.1126/sciadv.aar5459. eCollection 2018 Apr.
12. Template-independent enzymatic oligonucleotide synthesis (TiEOS): Its history, prospects, and challenges.
    Jensen MA, Davis RW. Biochemistry. 2018 Mar 27;57(12):1821-1832. doi: 10.1021/acs.biochem.7b00937. Epub 2018 Mar 13. Review.
13. Streamlined circular proximity ligation assay provides high stringency and compatibility with low-affinity antibodies.
    Jalil R, Horecka J, Swartz JR, Davis RW, Persson HHJ. Proc Natl Acad Sci U S A. 2018 Jan 16. doi: 10.1073/pnas.1718283115.
14. Quantitative analysis of protein interaction network dynamics in yeast.
    Celaj A, Schlecht U, Smith JD, Xu W, Suresh S, Miranda M, Aparicio AM, Proctor M, Davis RW, Roth FP, St Onge RP. Mol Syst Biol. 2017 Jul 13;13(7):934. doi: 10.15252/msb.20177532.
15. Autonomous sweat extraction and analysis applied to cystic fibrosis and glucose monitoring using a fully integrated wearable platform.
    Emaminejad S, Gao W, Wu E, Davies ZA, Nyein HYY, Challa S, Ryan SP, Fahad HM, Chen K, Shahpar Z, Talebi S, Milla C, Javey A, Davis RW. Proc Natl Acad Sci U S A. 2017 May 2;114(18):4625-30 doi: 10.1073/pnas.1701740114.
16. Heterologous expression of diverse propionyl-CoA carboxylases affects polyketide production in Escherichia coli.
    Vandova GA, O’Brien RV, Lowry B, Robbins TF, Fischer CR, Davis RW, Khosla C, Harvey CJB, Hillenmeyer ME. J Antibiot (Tokyo). 2017 Apr 12. doi: 10.1038/ja.2017.38.
17. Multifunctional, inexpensive, and reusable nanoparticle-printed biochip for cell manipulation and diagnosis.
    Esfandyarpour R, DiDonato MJ, Yang Y, Durmus NG, Harris JS, Davis RW. Proc Natl Acad Sci USA. 2017 Feb 21;114(8):E1306-E1315. doi: 10.1073/pnas.1621318114.
18. A method for high-throughput production of sequence-verified DNA libraries and strain collections.
    Smith JD, Schlecht U, Xu W, Suresh S, Horecka J, Proctor MJ, Aiyar RS, Bennett RA, Chu A, Li YF, Roy K, Davis RW, Steinmetz LM, Hyman RW, Levy SF, St Onge RP. Mol Syst Biol. 2017 Feb 13;13(2):913. doi: 10.15252/msb.20167233.
19. Application of 3D printing for smart objects with embedded electronic sensors and systems.
    Ota H, Emaminejad S, Gao Y, Zhao A, Wu E, Challa S, Chen K, Fahad HM, Jha AK, Kiriya D, Gao W, Shiraki H, Morioka K, Ferguson AR, Healy KE, Davis RW, Javey A. Adv Mater. 2016;1(1600013):1-8. doi: 10.1002/admt.201600013.
20. Systematic Mapping of Chemical-Genetic Interactions in Saccharomyces cerevisiae.
    Suresh S, Schlecht U, Xu W, Bray W, Miranda M, Davis RW, Nislow C, Giaever G, Lokey RS, St Onge RP. Cold Spring Harb Protoc. 2016 Sep 1;2016(9):pdb.top077701. doi: 10.1101/pdb.top077701.
21. Identification of chemical-genetic interactions via parallel analysis of barcoded yeast strains.
    Suresh S, Schlecht U, Xu W, Miranda M, Davis RW, Nislow C, Giaever G, St Onge RP. Cold Spring Harb Protoc. 2016 Sep 1;2016(9):pdb.prot088054. doi: 10.1101/pdb.prot088054.
22. Ndt80 activates the meiotic ORC1 transcript isoform and SMA2 via a bi-directional middle sporulation element in Saccharomyces cerevisiae.
    Xie B, Horecka J, Chu A, Davis RW, Becker E, Primig M. RNA Biol. 2016 Sep;13(9):772-82. doi: 10.1080/15476286.2016.1191738.
23. A wearable electrochemical platform for noninvasive simultaneous monitoring of Ca(2+) and pH.
    Nyein HY, Gao W, Shahpar Z, Emaminejad S, Challa S, Chen K, Fahad HM, Tai LC, Ota H, Davis RW, Javey A. ACS Nano. 2016 Jul 26;10(7):7216-24. doi: 10.1021/acsnano.6b04005.
24. An electrochemical platform for localized pH control on demand.
    Fomina N, Johnson CA, Maruniak A, Bahrampour S, Lang C, Davis RW, Kavusi S, Ahmad H. Lab Chip. 2016 Jun 21;16(12):2236-44. doi: 10.1039/c6lc00421k.
25. Nucleotide-specific contrast for DNA sequencing by electron spectroscopy.
    Mankos M, Persson HH, N'Diaye AT, Shadman K, Schmid AK, Davis RW. PLoS One. 2016 May 5;11(5):e0154707. doi: 10.1371/journal.pone.0154707.
26. Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design.
    Smith JD, Suresh S, Schlecht U, Wu M, Wagih O, Peltz G, Davis RW, Steinmetz LM, Parts L, St Onge RP. Genome Biol. 2016 Mar 8;17:45. doi: 10.1186/s13059-016-0900-9.
27. Integrating cell phone imaging with magnetic levitation (i-LEV) for label-free blood analysis at the point-of-living.
    Baday M, Calamak S, Durmus NG, Davis RW, Steinmetz LM, Demirci U. Small. 2016 Mar 2;12(9):1222-9. doi: 10.1002/smll.201501845.
28. Next-generation molecular testing of newborn dried blood spots for cystic fibrosis.
    Lefterova MI, Shen P, Odegaard JI, Fung E, Chiang T, Peng G, Davis RW, Wang W, Kharrazi M, Schrijver I, Scharfe C. J Mol Diagn. 2016 Mar;18(2):267-82. doi: 10.1016/j.jmoldx.2015.11.005.
29. Nanoelectronic three-dimensional (3D) nanotip sensing array for real-time, sensitive, label-free sequence specific detection of nucleic acids.
    Esfandyarpour R, Yang L, Koochak Z, Harris JS, Davis RW. Biomed Microdevices. 2016 Feb;18(1):7. doi: 10.1007/s10544-016-0032-8.
30. Fully integrated wearable sensor arrays for multiplexed in situ perspiration analysis.
    Gao W, Emaminejad S, Nyein HY, Challa S, Chen K, Peck A, Fahad HM, Ota H, Shiraki H, Kiriya D, Lien DH, Brooks GA, Davis RW, Javey A. Nature. 2016 Jan 28;529(7587):509-14. doi: 10.1038/nature16521.
31. A rapid, high-quality, cost-effective, comprehensive and exapandable targeted next-generation sequencing assay for inherited heart diseases.
    Wilson KD, Shen P, Fung E, Karakikes I, Zhang A, InanlooRahatloo K, Odegaard J, Sallam K, Davis RW, Lui GK, Ashley EA, Scharfe C, Wu JC. Circ Res. 2015 Sep 11;117(7):603-11. doi: 10.1161/circresaha.115.306723.
32. Multitarget, quantitative nanoplasmonic electrical field-enhanced resonating device (NE2RD) for diagnostics.
    Inci F, Filippini C, Baday M, Ozen MO, Calamak S, Durmus NG, Wang S, Hanhauser E, Hobbs KS, Juillard F, Kuang PP, Vetter ML, Carocci M, Yamamoto HS, Takagi Y, Yildiz UH, Akin D, Wesemann DR, Singhal A, Yang PL, Nibert ML, Fichorova RN, Lau DT, Henrich TJ, Kaye KM, Schachter SC, Kuritzkes DR, Steinmetz LM, Gambhir SS, Davis RW, Demirci U. Proc Natl Acad Sci U S A. 2015 Aug 11;112(32):E4354-63. doi: 10.1073/pnas.1510824112.
33. Magnetic levitation of single cells.
    Durmus NG, Tekin HC, Guven S, Sridhar K, Arslan Yildiz A, Calibasi G, Ghiran I, Davis RW, Steinmetz LM, Demirci U. Proc Natl Acad Sci U S A. 2015 Jul 14;112(28):E3661-8. doi: 10.1073/pnas.1509250112.
34. RASA: Robust alternative splicing analysis for human transcriptome arrays.
    Seok J, Xu W, Davis RW, Xiao W. Sci Rep. 2015 Jul 6;5:11917. doi: 10.1038/srep11917.
35. LBP19: Extended coverage by next generation sequencing methods refines the characterization of the common and well documented hla alleles.
    Fernandez-Vina A, Wang C, Krishnakumar S, Levinson DF, Davis RW, Mindrinos M. Hum Immunol. 2015 Apr;76(4):210-38. doi: 10.1016/j.humimm.2015.01.051.
36. Integrating cell phone imaging with magnetic levitation (i-LEV) for label-free blood analysis at the point-of-living.
    Baday M, Calamak S, Durmus NG, Davis RW, Steinmetz LM, Dermirci U. Small. 2016 Mar 2;12(9):122-9. doi:10.1002/smll.201501845. Epub 2015 Nov 2.
37. A simple method for encapsulating single cells in alginate microspheres allows for direct PCR and whole genome amplification.
    Bigdeli S, Dettloff RO, Frank CW, Davis RW, Crosby LD. PLoS One. 2015 Feb 17;10(2):e0117738. doi:10.1371/journal.pone.0117738. eCollection 2015.
38. Integrated RNA- and protein profiling of fermentation and respiration in diploid budding yeast provides insight into nutrient control of cell growth and development.
    Becker E, Liu Y, Lardenois A, Walther T, Horecka J, Stuparevic I, Law MJ, Lavigne R, Evrard B, Demougin P, Riffle M, Strich R, Davis RW, Pineau C, Primig M. J Proteomics. 2015 Feb 4;119C:30-44. doi: 10.1016/j.jprot.2015.01.015.
39. Tunable control of antibody immobilization using electric field.
    Emaminejad S, Javanmard M, Gupta C, Chang S, Davis RW, Howe RT. Proc Natl Acad Sci U S A. 2015 Feb 17;112(7):1995-9. doi: 10.1073/pnas.1424592112. Epub 2015 Feb 3.
40. Multielectrode sensing for extraction of signal from noise in impedance cytometry.
    Emaminejad S, Talebi S, Davis RW, Javanmard M. IEEE Sens J. 2015 Jan 8;15(5):2715-6. doi: 10.1109/jsen.2015.2389224.
41. Mice are not men. W
    arren HS, Tompkins RG, Moldawer LL, Seok J, Xu W, Mindrinos MN, Maier RV, Xiao W, Davis RW. Proc Natl Acad Sci U S A. 2015 Jan 27;112(4):E345. doi: 10.1073/pnas.1414857111. Epub 2014 Dec 24.
42. The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development.
    Lardenois A, Stuparevic I, Liu Y, Law MJ, Becker E, Smagulova F, Waern K, Guilleux MH, Horecka J, Chu A, Kervarrec C, Strich R, Snyder M, Davis RW, Steinmetz LM, Primig M. Nucleic Acids Res. 2015 Jan;43(1):115-28. doi: 10.1093/nar/gku1185. Epub 2014 Dec 3.
43. Single cell mutational analysis of PIK3CA in circulating tumor cells and metastases in breast cancer reveals heterogeneity, discordance, and mutation persistence in cultured disseminated tumor cells from bone marrow.
    Deng G, Krishnakumar S, Powell AA, Zhang H, Mindrinos MN, Telli ML, Davis RW, Jeffrey SS. BMC Cancer. 2014 Jun 19;14:456. doi: 10.1186/1471-2407-14-456.
44. Detecting differential protein expression in large-scale population proteomics.
    Ryu SY, Qian WJ, Camp DG, Smith RD, Tompkins RG, Davis RW, Xiao W. Bioinformatics. 2014 Oct;30(19):2741-6. doi: 10.1093/bioinformatics/btu341. Epub 2014 Jun 12.
45. Functional genomics with a comprehensive library of transposon mutants for the sulfate-reducing bacterium Desulfovibrio alaskensis G20.
    Kuehl JV, Price MN, Ray J, Wetmore KM, Esquivel Z, Kazakov AE, Nguyen M, Kuehn R, Davis RW, Hazen TC, Arkin AP, Deutschbauer A.MBio. 2014 May 27;5(3):e01041-14. doi: 10.1128/mBio.01041-14.
46. Multiplexed actuation using ultra dielectrophoresis for proteomics applications: a comprehensive electrical and electrothermal design methodology.
    Emaminejad S, Dutton RW, Davis RW, Javanmard M. Lab Chip. 2014 Jun 21;14(12):2105-14. doi: 10.1039/c4lc00036f. Epub 2014 May 7.
47. Targeted and highly multiplexed detection of microorganisms by employing an ensemble of molecular probes.
    Xu W, Krishnakumar S, Miranda M, Jensen MA, Fukushima M, Palm C, Fung E, Davis RW, St Onge RP, Hyman RW. Appl Environ Microbiol. 2014 Jul;80(14):4153-61. doi: 10.1128/AEM.00666-14. Epub 2014 May 2.
48. Mapping the cellular response to small molecules using chemogenomic fitness signatures.
    Lee AY, St Onge RP, Proctor MJ, Wallace IM, Nile AH, Spagnuolo PA, Jitkova Y, Gronda M, Wu Y, Kim MK, Cheung-Ong K, Torres NP, Spear ED, Han MK, Schlecht U, Suresh S, Duby G, Heisler LE, Surendra A, Fung E, Urbanus ML, Gebbia M, Lissina E, Miranda M, Chiang JH, Aparicio AM, Zeghouf M, Davis RW, Cherfils J, Boutry M, Kaiser CA, Cummins CL, Trimble WS, Brown GW, Schimmer AD, Bankaitis VA, Nislow C, Bader GD, Giaever G. Science. 2014 Apr 11;344(6180):208-11. doi: 10.1126/science.1250217. Erratum in: Science. 2014 May 23;344(6186):1255771.
49. A functional screen for copper homeostasis genes identifies a pharmacologically tractable cellular system.
    Schlecht U, Suresh S, Xu W, Aparicio AM, Chu A, Proctor MJ, Davis RW, Scharfe C, St Onge RP. BMC Genomics. 2014 Apr 5;15:263. doi: 10.1186/1471-2164-15-263.
50. The 50:50 method for PCR-based seamless genome editing in yeast.
    Horecka J, Davis RW. Yeast. 2014 Mar;31(3):103-12. doi: 10.1002/yea.2992. Epub 2013 Dec 13.
51. IpO: plasmids and methods for simplified, PCR-based DNA transplant in yeast.
    Horecka J, Chu AM, Davis RW. Yeast. 2014 May;31(5):185-93. doi: 10.1002/yea.3006. Epub 2014 Mar 20.
52. Scan statistics analysis for detection of introns in time-course tiling array data.
    Reiner-Benaim A, Davis RW, Juneau K. Stat Appl Genet Mol Biol. 2014 Apr 1;13(2):173-90. doi: 10.1515/sagmb-2013-0038.
53. A novel low energy electron microscope for DNA sequencing and surface analysis.
    Mankos M, Shadman K, Persson HH, N'Diaye AT, Schmid AK, Davis RW. Ultramicroscopy. 2014 Oct;145:36-49. doi: 10.1016/j.ultramic.2014.01.007. Epub 2014 Jan 31.
54. Digital microfluidic assay for protein detection.
    Mok J, Mindrinos MN, Davis RW, Javanmard M. Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2110-5. doi: 10.1073/pnas.1323998111. Epub 2014 Jan 21.
55. Molecular indexing enables quantitative targeted RNA sequencing and reveals poor efficiencies in standard library preparations.
    Fu GK, Xu W, Wilhelmy J, Mindrinos MN, Davis RW, Xiao W, Fodor SP. Proc Natl Acad Sci U S A. 2014 Feb 4;111(5):1891-6. doi: 10.1073/pnas.1323732111. Epub 2014 Jan 21.
56. Label-free electronic probing of nucleic acids and proteins at the nanoscale using the nanoneedle biosensor.
    Esfandyarpour R, Javanmard M, Koochak Z, Esfandyarpour H, Harris JS, Davis RW. Biomicrofluidics. 2013 Aug 6;7(4):44114. doi: 10.1063/1.4817771. eCollection 2013. Erratum in: Biomicrofluidics. 2014;8(2):029901.
57. Nanoelectronic impedance detection of target cells.
    Esfandyarpour R, Javanmard M, Koochak Z, Harris JS, Davis RW. Biotechnol Bioeng. 2014 Jun;111(6):1161-9. doi: 10.1002/bit.25171. Epub 2013 Dec 28.
58. Computational identification and analysis of orphan assembly-line polyketide synthases.
    O'Brien RV, Davis RW, Khosla C, Hillenmeyer ME. J Antibiot (Tokyo). 2014 Jan;67(1):89-97. doi: 10.1038/ja.2013.125. Epub 2013 Dec 4.
59. Ceftriaxone increases glutamate uptake and reduces striatal tyrosine hydroxylase loss in 6-OHDA Parkinson's model.
    Chotibut T, Davis RW, Arnold JC, Frenchek Z, Gurwara S, Bondada V, Geddes JW, Salvatore MF. Mol Neurobiol. 2014 Jun;49(3):1282-92. doi: 10.1007/s12035-013-8598-0. Epub 2013 Dec 3.
60. PITPs as targets for selectively interfering with phosphoinositide signaling in cells.
    Nile AH, Tripathi A, Yuan P, Mousley CJ, Suresh S, Wallace IM, Shah SD, Pohlhaus DT, Temple B, Nislow C, Giaever G, Tropsha A, Davis RW, St Onge RP, Bankaitis VA. Nat Chem Biol. 2014 Jan;10(1):76-84. doi: 10.1038/nchembio.1389. Epub 2013 Nov 24.
61. Treadmill exercise inhibits apoptotic neuronal cell death with suppressed vascular endothelial growth factor expression in the retinas of the diabetic rats.
    Ji ES, Ko IG, Cho JW, Davis RW, Hwang GY, Jee YS, Lim BV. J Exerc Rehabil. 2013 Jun 30;9(3):348-53. doi: 10.12965/jer.130043. eCollection 2013.
62. Simulation and fabrication of a new novel 3D injectable biosensor for high throughput genomics and proteomics in a lab-on-a-chip device.
    Esfandyarpour R, Esfandyarpour H, Harris JS, Davis RW. Nanotechnology. 2013 Nov 22;24(46):465301. doi: 10.1088/0957-4484/24/46/465301. Epub 2013 Oct 22.
63. To study human inflammatory diseases in humans.
    Tompkins RG, Warren HS, Mindrinos MN, Xiao W, Davis RW. Proc Natl Acad Sci USA. 2013 Sep 3;110(36):E3371.
64. Of men, not mice, and inflammation.
    Warren HS, Tompkins RG, Mindrinos MN, Xiao W, Davis RW. Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):E3151.
65. The Sequencing Bead Array (SBA), a next-generation digital suspension array.
    Akhras MS, Pettersson E, Diamond L, Unemo M, Okamoto J, Davis RW, Pourmand N. PLoS One. 2013 Oct 7;8(10):e76696. doi: 10.1371/journal.pone.0076696. eCollection 2013.
66. Determination of burn patient outcome by large-scale quantitative discovery proteomics.
    Finnerty CC, Jeschke MG, Qian WJ, Kaushal A, Xiao W, Liu T, Gritsenko MA, Moore RJ, Camp DG 2nd, Moldawer LL, Elson C, Schoenfeld D, Gamelli R, Gibran N, Klein M, Arnoldo B, Remick D, Smith RD, Davis R, Tompkins RG, Herndon DN; Investigators of the Inflammation and the Host Response Glue Grant. Crit Care Med. 2013 Jun;41(6):1421-34. doi: 10.1097/CCM.0b013e31827c072e.
67. Direct oligonucleotide synthesis onto super-paramagnetic beads.
    Jensen MA, Akhras MS, Fukushima M, Pourmand N, Davis RW. J Biotechnol. 2013 Aug 11;167(4):448-453. doi: 10.1016/j.jbiotec.2013.08.006.
68. Progress toward an aberration-corrected low energy electron microscope for DNA sequencing and surface analysis. 
    Mankos M, Shadman K, N'diaye AT, Schmid AK, Persson HH, Davis RW.  J Vac Sci Technol B Nanotechnol Microelectron. 2012 Nov;30(6):6F402. Epub 2012 Oct 26.
69. Multiplex target capture with double-stranded DNA probes. 
    Shen P, Wang W, Chi AK, Fan Y, Davis RW, Scharfe C.  Genome Med. 2013 May 29;5(5):50.
70. Diversity of the vaginal microbiome correlates with preterm birth. 
    Hyman RW, Fukushima M, Jiang H, Fung E, Rand L, Johnson B, Vo KC, Caughey AB, Hilton JF, Davis RW, Giudice LC.  Reprod Sci. 2013 May 28.
71. Trauma-associated human neutrophil alterations revealed by comparative proteomics profiling. 
    Zhou JY, Krovvidi RK, Gao Y, Gao H, Petritis BO, De AK, Miller-Graziano CL, Bankey PE, Petyuk VA, Nicora CD, Clauss TR, Moore RJ, Shi T, Brown JN, Kaushal A, Xiao W, Davis RW, Maier RV, Tompkins RG, Qian WJ, Camp DG 2nd, Smith RD; the Inflammation and the Host Response to Injury Large Scale Collaborative Research Program.  Proteomics Clin Appl. 2013 Apr 16. doi: 10.1002/prca.201200109.
72. Rare variant detection using family-based sequencing analysis. 
    Peng G, Fan Y, Palculict TB, Shen P, Ruteshouser EC, Chi AK, Davis RW, Huff V, Scharfe C, Wang W.  Proc Natl Acad Sci USA. 2013 Mar 5;110(10):3985-90. doi: 10.1073/pnas.1222158110. Epub 2013 Feb 20.
73. Genomic Responses in mouse models poorly mimic human inflammatory diseases. 
    Seok J, Warren HS, Cuenca AG, Mindrinos MN, Baker HV, Xu W, Richards DR, McDonald-Smith GP, Gao H, Hennessy L, Finnerty CC, López CM, Honari S, Moore EE, Minei JP, Cuschieri J, Bankey PE, Johnson JL, Sperry J, Nathens AB, Billiar TR, West MA, Jeschke MG, Klein MB, Gamelli RL, Gibran NS, Brownstein BH, Miller-Graziano C, Calvano SE, Mason PH, Cobb JP, Rahme LG, Lowry SF, Maier RV, Moldawer LL, Herndon DN, Davis RW, Xiao W, Tompkins RG; Inflammation and Host Response to Injury, Large Scale Collaborative Research Program.  Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3507-12. doi: 10.1073/pnas.1222878110. Epub 2013 Feb 11.
74. Microneedle Biosensor: A Method for Direct Label-free Real Time Protein Detection. 
    Esfandyarpour R, Esfandyarpour H, Javanmard M, Harris JS, Davis RW.  Sens Actuators B Chem. 2013 Feb;177:848-855.
75. Smart surface for elution of protein-protein bound particles: nanonewton dielectrophoretic forces using atomic layer deposited oxides. 
    Emaminejad S, Javanmard M, Dutton RW, Davis RW.  Anal Chem. 2012 Dec 18;84(24):10793-801. doi: 10.1021/ac302857z. Epub 2012 Dec 6
76. Microfluidic diagnostic tool for the developing world: contactless impedance flow cytometry. 
    Emaminejad S, Javanmard M, Dutton RW, Davis RW.  Lab Chip. 2012 Sep 12.
77. Cationic amphiphilic drugs are potent inhibitors of yeast sporulation. 
    Schlecht U, St Onge RP, Walther T, François JM, Davis RW.  PLoS One. 2012;7(8):e42853. Epub 2012 Aug 8.
78. Control of DNA Capture by Nanofluidic Transistors. 
    Paik KH, Liu Y, Tabard-Cossa V, Waugh MJ, Huber DE, Provine J, Howe RT, Dutton RW, Davis RW.  ACS Nano. 2012 Jul 11.
79. Coding SNPs as intrinsic markers for sample tracking in large-scale transcriptome studies. 
    Xu W, Gao H, Biotechniques. 2012 Jun;52(6):386-8.  Seok J, Wilhelmy J, Mindrinos MN, Davis RW, Xiao W.
80. Multiplex assay for condition-dependent changes in protein-protein interactions. 
    Schlecht U, Miranda M, Suresh S, Davis RW, St Onge RP.  Proc Natl Acad Sci U S A. 2012 Jun 5;109(23):9213-8. Epub 2012 May 21.
81. High-throughput, high-fidelity HLA genotyping with deep sequencing. 
    Wang C, Krishnakumar S, Wilhelmy J, Babrzadeh F, Stepanyan L, Su LF, Levinson D, Fernandez-Viña MA, Davis RW, Davis MM, Mindrinos M.  Proc Natl Acad Sci U S A. 2012 May 29;109(22):8676-81. Epub 2012 May 15.
82. Single cell profiling of circulating tumor cells: transcriptional heterogeneity and diversity from breast cancer cell lines. 
    Powell AA, Talasaz AH, Zhang H, Coram MA, Reddy A, Deng G, Telli ML, Advani RH, Carlson RW, Mollick JA, Sheth S, Kurian AW, Ford JM, Stockdale FE, Quake SR, Pease RF, Mindrinos MN, Bhanot G, Dairkee SH, Davis RW, Jeffrey SS.  PLoS One. 2012;7(5):e33788. Epub 2012 May 7.
83. Whole-genome sequencing of the efficient industrial fuel-ethanol fermentative Saccharomyces cerevisiae strain CAT-1. 
    Babrzadeh F, Jalili R, Wang C, Shokralla S, Pierce S, Robinson-Mosher A, Nyren P, Shafer RW, Basso LC, de Amorim HV, de Oliveira AJ, Davis RW, Ronaghi M, Gharizadeh B, Stambuk BU.  Mol Genet Genomics. 2012 Jun;287(6):485-94. Epub 2012 May 6.
84. A rapid, cost-effective method of assembly and purification of synthetic DNA probes >100 bp. 
    Jensen MA, Jauregui L, Davis RW.  PLoS One. 2012;7(4):e34373. Epub 2012 Apr 6.
85. Benchmarking outcomes in the critically injured trauma patient and the effect of implementing standard operating procedures. 
    Cuschieri J, Johnson JL, Sperry J, West MA, Moore EE, Minei JP, Bankey PE, Nathens AB, Cuenca AG, Efron PA, Hennessy L, Xiao W, Mindrinos MN, McDonald-Smith GP, Mason PH, Billiar TR, Schoenfeld DA, Warren HS, Cobb JP, Moldawer LL, Davis RW, Maier RV, Tompkins RG; Inflammation and Host Response to Injury, Large Scale Collaborative Research Program.
86. JETTA: Junction and Exon Toolkits for Transcriptome Analysis.
    Seok J, Xu W, Gao H, Davis RW, Xiao W. Bioinformatics. 2012 Mar 19.
87. Molecular probe technology detects bacteria without culture.
    Hyman RW, St Onge RP, Kim H, Tamaresis JS, Miranda M, Aparicio AM, Fukushima M, Pourmand N, Giudice LC, Davis RW BMC Microbiol. 2012 Mar 9;12(1):29.
88. A global perspective of the genetic basis for carbonyl stress resistance.
    Hoon S, Gebbia M, Costanzo M, Davis RW, Giaever G, Nislow C. G3 (Bethesda). 2011 Aug;1(3):219-31. Epub 2011 Aug 1.
89. Improvement in cell capture throughput using parallel bioactivated microfluidic channels.
    Javanmard M, Babrzadeh F, Nyrén P, Davis RW. Biomed Microdevices. 2012 Feb 28.
90. Knowledge-based reconstruction of mRNA transcripts with short sequencing reads for transcriptome research. 
    Seok J, Xu W, Jiang H, Davis RW, Xiao W.  PLoS One. 2012;7(2):e31440. Epub 2012 Feb 1.
91. Transient striatal GLT-1 blockade increases EAAC1 expression, glutamate reuptake, and decreases tyrosine hydroxylase phosphorylation at ser(19). 
    Salvatore MF, Davis RW, Arnold JC, Chotibut T.  Exp Neurol. 2012 Jan 17.
92. Use of negative dielectrophoresis for selective elution of protein-bound particles.
    Javanmard M, Emaminejad S, Dutton RW, Davis RW.  Anal Chem. 2012 Feb 7;84(3):1432-8. Epub 2012 Jan 20.
93. The dynamics of the vaginal microbiome during infertility therapy with in vitro fertilization-embryo transfer. 
    Hyman RW, Herndon CN, Jiang H, Palm C, Fukushima M, Bernstein D, Vo KC, Zelenko Z, Davis RW, Giudice LC.  J Assist Reprod Genet. 2012 Feb;29(2):105-15. Epub 2012 Jan 6.
94. High-throughput VDJ sequencing for quantification of minimal residual disease in chronic lymphocytic leukemia and immune reconstitution assessment. 
    Logan AC, Gao H, Wang C, Sahaf B, Jones CD, Marshall EL, Buño I, Armstrong R, Fire AZ, Weinberg KI, Mindrinos M, Zehnder JL, Boyd SD, Xiao W, Davis RW, Miklos DB.  Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):21194-9. Epub 2011 Dec 12.
95. Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions. 
    Deutschbauer A, Price MN, Wetmore KM, Shao W, Baumohl JK, Xu Z, Nguyen M, Tamse R, Davis RW, Arkin AP.  PLoS Genet. 2011 Nov;7(11):e1002385. Epub 2011 Nov 17.
96. A genomic storm in critically injured humans. 
    Xiao W, Mindrinos MN, Seok J, Cuschieri J, Cuenca AG, Gao H, Hayden DL, Hennessy L, Moore EE, Minei JP, Bankey PE, Johnson JL, Sperry J, Nathens AB, Billiar TR, West MA, Brownstein BH, Mason PH, Baker HV, Finnerty CC, Jeschke MG, López MC, Klein MB, Gamelli RL, Gibran NS, Arnoldo B, Xu W, Zhang Y, Calvano SE, McDonald-Smith GP, Schoenfeld DA, Storey JD, Cobb JP, Warren HS, Moldawer LL, Herndon DN, Lowry SF, Maier RV, Davis RW, Tompkins RG; Inflammation and Host Response to Injury Large-Scale Collaborative Research Program.  J Exp Med. 2011 Dec 19;208(13):2581-90. Epub 2011 Nov 21.
97. The Human OligoGenome Resource: a database of oligonucleotide capture probes for resequencing target regions across the human genome. 
    Newburger DE, Natsoulis G, Grimes S, Bell JM, Davis RW, Batzoglou S, Ji HP.  Nucleic Acids Res. 2012 Jan;40(Database issue):D1137-43. Epub 2011 Nov 18.
98. Dissecting inflammatory complications in critically injured patients by within-patient gene expression changes: a longitudinal clinical genomics study. 
    Desai KH, Tan CS, Leek JT, Maier RV, Tompkins RG, Storey JD; Inflammation and the Host Response to Injury Large-Scale Collaborative Research Program.  PLoS Med. 2011 Sep;8(9):e1001093. Epub 2011 Sep 13.
99. Correction to cell-sirected integration into three-dimensional lipid-silica nanostructured matrices.
    Harper JC, Khripin CY, Carnes EC, Ashley CE, Lopez DM, Savage T, Jones HD, Davis RW, Nunez DE, Brinker LM, Kaehr B, Brozik SM, Brinker CJ.ACS Nano. 2011 Feb 10.
100. Cell-directed integration into three-dimensional lipid-silica nanostructured matrices.
     Harper JC, Khirpin CY, Carnes EC, Ashley CE, Lopez DM, Savage T, Jones HD, Davis RW, Nunez DE, Brinker LM, Kaehr B, Brozik SM, Brinker CJ.ACS Nano. 2010 Oct 26;4(10):5539-50.
101. Identification and interpretation of longitudinal gene expression changes in trauma.
     Rajicic N, Cuschieri J, Finkelstein DM, Miller-Graziano CL, Hayden D, Moldawer LL, Moore E, O'Keefe G, Pelik K, Warren HS, Schoenfeld DA; Inflammation and the Host Response to Injury Large Scale Collaborative Research Program.PLoS One. 2010 Dec 20;5(12):e14380.
102. Distinctive responsiveness to stromal signaling accompanies histologic grade programming of cancer cells.
     Luciani MG, Seok J, Sayeed A, Champion S, Goodson WH, Jeffrey SS, Xiao W, Mindrinos M, Davis RW, Dairkee SH. PLoS One. 2011;6(5):e20016. Epub 2011 May 19.
103. The Automated Cell: Compound and Environment Screening System (ACCESS) for Chemogenomic Screening.
     Proctor M, Urbanus ML, Fung EL, Jaramillo DF, Davis RW, Nislow C, Giaever G. Methods Mol Biol. 2011;759:239-69. [PubMed]
104. Human transcriptome array for high-throughput clinical studies.
     Xu W, Seok J, Mindrinos MN, Schweitzer AC, Jiang H, Wilhelmy J, Clark TA, Kapur K, Xing Y, Faham M, Storey JD, Moldawer LL, Maier RV, Tompkins RG, Wong WH, Davis RW, Xiao W. Proc Natl Acad Sci U S A. 2011;108(9):3707-12. PMCID: 3048146. [PubMed]
105. Identification of rare DNA variants in mitochondrial disorders with improved array-based sequencing.
     Wang W, Shen P, Thiyagarajan S, Lin S, Palm C, Horvath R, Klopstock T, Cutler D, Pique L, Schrijver I, Davis RW, Mindrinos M, Speed TP, Scharfe C.Nucleic Acids Res. 2011;39(1):44-58. PMCID: 3017602. [PubMed]
106. High-quality DNA sequence capture of 524 disease candidate genes.
     Shen P, Wang W, Krishnakumar S, Palm C, Chi AK, Enns GM, Davis RW, Speed TP, Mindrinos MN, Scharfe C. Proc Natl Acad Sci U S A. 2011;108(16):6549-54. PMCID: 3080966. [PubMed]
107. Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6.
     Lardenois A, Liu Y, Walther T, Chalmel F, Evrard B, Granovskaia M, Chu A, Davis RW, Steinmetz LM, Primig M. Proc Natl Acad Sci U S A. 2011;108(3):1058-63. PMCID: 3024698. [PubMed]
108. Analysis of factorial time-course microarrays with application to a clinical study of burn injury.
     Zhou B, Xu W, Herndon D, Tompkins R, Davis R, Xiao W, Wong WH, Toner M, Warren HS, Schoenfeld DA, Rahme L, McDonald-Smith GP, Hayden D, Mason P, Fagan S, Yu YM, Cobb JP, Remick DG, Mannick JA, Lederer JA, Gamelli RL, Silver GM, West MA, Shapiro MB, Smith R, Camp DG, 2nd, Qian W, Storey J, Mindrinos M, Tibshirani R, Lowry S, Calvano S, Chaudry I, Cohen M, Moore EE, Johnson J, Moldawer LL, Baker HV, Efron PA, Balis UG, Billiar TR, Ochoa JB, Sperry JL, Miller-Graziano CL, De AK, Bankey PE, Finnerty CC, Jeschke MG, Minei JP, Arnoldo BD, Hunt JL, Horton J, Brownstein B, Freeman B, Maier RV, Nathens AB, Cuschieri J, Gibran N, Klein M, O'Keefe G. Proc Natl Acad Sci U S A. 2010;107(22):9923-8. PMCID: 2890487. [PubMed]
109. Predicting patient survival from longitudinal gene expression.
     Zhang Y, Tibshirani RJ, Davis RW. Stat Appl Genet Mol Biol. 2010;9(1):Article41. PMCID: 3004784. [PubMed]
110. High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets.
     Wang C, Sanders CM, Yang Q, Schroeder HW, Jr., Wang E, Babrzadeh F, Gharizadeh B, Myers RM, Hudson JR, Jr., Davis RW, Han J. Proc Natl Acad Sci U S A. 2010;107(4):1518-23. PMCID: 2824416. [PubMed]
111. Knowledge-based analysis of microarrays for the discovery of transcriptional regulation relationships.
     Seok J, Kaushal A, Davis RW, Xiao W. BMC Bioinformatics. 2010;11 Suppl 1:S8. PMCID: 3009543. [PubMed]
112. A universal TagModule collection for parallel genetic analysis of microorganisms.
     Oh J, Fung E, Price MN, Dehal PS, Davis RW, Giaever G, Nislow C, Arkin AP, Deutschbauer A. Nucleic Acids Res. 2010;38(14):e146. PMCID: 2919733. [PubMed]
113. Gene annotation and drug target discovery in Candida albicans with a tagged transposon mutant collection.
     Oh J, Fung E, Schlecht U, Davis RW, Giaever G, St Onge RP, Deutschbauer A, Nislow C. PLoS Pathog. 2010;6(10). PMCID: 2951378. [PubMed]
114. Sensitive giant magnetoresistive-based immunoassay for multiplex mycotoxin detection.
     Mak AC, Osterfeld SJ, Yu H, Wang SX, Davis RW, Jejelowo OA, Pourmand N. Biosens Bioelectron. 2010;25(7):1635-9. PMCID: 2947153. [PubMed]
115. A molecular inversion probe assay for detecting alternative splicing.
     Lin S, Wang W, Palm C, Davis RW, Juneau K. BMC Genomics. 2010;11:712. PMCID: 3022918. [PubMed]
116. Clinical microfluidics for neutrophil genomics and proteomics.
     Kotz KT, Xiao W, Miller-Graziano C, Qian WJ, Russom A, Warner EA, Moldawer LL, De A, Bankey PE, Petritis BO, Camp DG, 2nd, Rosenbach AE, Goverman J, Fagan SP, Brownstein BH, Irimia D, Xu W, Wilhelmy J, Mindrinos MN, Smith RD, Davis RW, Tompkins RG, Toner M. Nat Med. 2010;16(9):1042-7. [PubMed]
117. Gas-phase cleavage and dephosphorylation of universal linker-bound oligodeoxynucleotides.
     Jensen MA, Anderson KM, Davis RW. Nucleosides Nucleotides Nucleic Acids. 2010;29(11):867-78. [PubMed]
118. DMSO and betaine greatly improve amplification of GC-rich constructs in de novo synthesis.
     Jensen MA, Fukushima M, Davis RW. PLoS One. 2010;5(6):e11024. PMCID: 2883997. [PubMed]
119. Multiplex identification of microbes.
     Hyman RW, St Onge RP, Allen EA, Miranda M, Aparicio AM, Fukushima M, Davis RW. Appl Environ Microbiol. 2010;76(12):3904-10. PMCID: 2893500. [PubMed]
120. A direct comparison of the KB Basecaller and phred for identifying the bases from DNA sequencing using chain termination chemistry.
     Hyman RW, Jiang H, Fukushima M, Davis RW. BMC Res Notes. 2010;3:257. PMCID: 3020662. [PubMed]
121. Systematic analysis of genome-wide fitness data in yeast reveals novel gene function and drug action.
     Hillenmeyer ME, Ericson E, Davis RW, Nislow C, Koller D, Giaever G. Genome Biol. 2010;11(3):R30. PMCID: 2864570. [PubMed]
122. Semi-automated library preparation for high-throughput DNA sequencing platforms.
     Farias-Hesson E, Erikson J, Atkins A, Shen P, Davis RW, Scharfe C, Pourmand N. J Biomed Biotechnol. 2010;2010:617469. PMCID: 2896710. [PubMed]
123. Sequential use of transcriptional profiling, expression quantitative trait mapping, and gene association implicates MMP20 in human kidney aging.
     Wheeler HE, Metter EJ, Tanaka T, Absher D, Higgins J, Zahn JM, Wilhelmy J, Davis RW, Singleton A, Myers RM, Ferrucci L, Kim SK. PLoS Genet. 2009;5(10):e1000685. PMCID: 2752811. [PubMed]
124. Isolating highly enriched populations of circulating epithelial cells and other rare cells from blood using a magnetic sweeper device.
     Talasaz AH, Powell AA, Huber DE, Berbee JG, Roh KH, Yu W, Xiao W, Davis MM, Pease RF, Mindrinos MN, Jeffrey SS, Davis RW. Proc Natl Acad Sci U S A. 2009;106(10):3970-5. PMCID: 2645911. [PubMed]
125. Whole genome survey of coding SNPs reveals a reproducible pathway determinant of Parkinson disease.
     Srinivasan BS, Doostzadeh J, Absalan F, Mohandessi S, Jalili R, Bigdeli S, Wang J, Mahadevan J, Lee CL, Davis RW, William Langston J, Ronaghi M. Hum Mutat. 2009;30(2):228-38. PMCID: 2793088. [PubMed]
126. A dynamic network of transcription in LPS-treated human subjects.
     Seok J, Xiao W, Moldawer LL, Davis RW, Covert MW. BMC Syst Biol. 2009;3:78. PMCID: 2729748. [PubMed]
127. Mapping gene associations in human mitochondria using clinical disease phenotypes.
     Scharfe C, Lu HH, Neuenburg JK, Allen EA, Li GC, Klopstock T, Cowan TM, Enns GM, Davis RW. PLoS Comput Biol. 2009;5(4):e1000374. PMCID: 2668170. [PubMed]
128. Meiotic recombination generates rich diversity in NK cell receptor genes, alleles, and haplotypes.
     Norman PJ, Abi-Rached L, Gendzekhadze K, Hammond JA, Moesta AK, Sharma D, Graef T, McQueen KL, Guethlein LA, Carrington CV, Chandanayingyong D, Chang YH, Crespi C, Saruhan-Direskeneli G, Hameed K, Kamkamidze G, Koram KA, Layrisse Z, Matamoros N, Mila J, Park MH, Pitchappan RM, Ramdath DD, Shiau MY, Stephens HA, Struik S, Tyan D, Verity DH, Vaughan RW, Davis RW, Fraser PA, Riley EM, Ronaghi M, Parham P. Genome Res. 2009;19(5):757-69. PMCID: 2675964. [PubMed]
129. A genome-wide screen for regulators of TORC1 in response to amino acid starvation reveals a conserved Npr2/3 complex.
     Neklesa TK, Davis RW. PLoS Genet. 2009;5(6):e1000515. PMCID: 2686269. [PubMed]
130. Alternative splicing of PTC7 in Saccharomyces cerevisiae determines protein localization.
     Juneau K, Nislow C, Davis RW. Genetics. 2009;183(1):185-94. PMCID: 2746143. [PubMed]
131. Electrical detection of protein biomarkers using bioactivated microfluidic channels.
     Javanmard M, Talasaz AH, Nemat-Gorgani M, Pease F, Ronaghi M, Davis RW. Lab Chip. 2009;9(10):1429-34. PMCID: 2778468. [PubMed]
132. Electrical Detection of Proteins and DNA using Bioactivated Microfluidic Channels: Theoretical and Experimental Considerations.
     Javanmard M, Esfandyarpour H, Pease F, Davis RW. J Vac Sci Technol B Microelectron Nanometer Struct Process Meas Phenom. 2009;27(6):3099-103. PMCID: 2868200. [PubMed]
133. A Microfluidic Platform for Characterization of Protein-Protein Interactions.
     Javanmard M, Talasaz AH, Nemat-Gorgani M, Huber DE, Pease F, Ronaghi M, Davis RW. IEEE Sens J. 2009;9(8):883-91. PMCID: 2868195. [PubMed]
134. Multiplex protein assays based on real-time magnetic nanotag sensing.
     Osterfeld SJ, Yu H, Gaster RS, Caramuta S, Xu L, Han SJ, Hall DA, Wilson RJ, Sun S, White RL, Davis RW, Pourmand N, Wang SX. Proc Natl Acad Sci U S A. 2008;105(52):20637-40. PMCID: 2602607. [PubMed]
135. High-resolution, in vivo magnetic resonance imaging of Drosophila at 18.8 Tesla.
     Null B, Liu CW, Hedehus M, Conolly S, Davis RW. PLoS One. 2008;3(7):e2817. PMCID: 2474967. [PubMed], [Publisher Full Text]
136. Superoxide anions regulate TORC1 and its ability to bind Fpr1:rapamycin complex.
     Neklesa TK, Davis RW. Proc Natl Acad Sci U S A. 2008;105(39):15166-71. PMCID: 2567509. [PubMed]
137. A comprehensive assay for targeted multiplex amplification of human DNA sequences.
     Krishnakumar S, Zheng J, Wilhelmy J, Faham M, Mindrinos M, Davis R. Proc Natl Acad Sci U S A. 2008 Jul 8;105(27):9296-301. Epub 2008 Jul 2. [PubMed], [Publisher Full Text]
138. Pervasive and persistent redundancy among duplicated genes in yeast.
     Dean EJ, Davis JC, Davis RW, Petrov DA. PLoS Genet. 2008 Jul 4;4(7):e1000113. PMCID: 2440806. [PubMed], [Publisher Full Text]
139. High throughput automated allele frequency estimation by pyrosequencing.
     Doostzadeh J, Shokralla S, Absalan F, Jalili R, Mohandessi S, Langston JW, Davis RW, Ronaghi M, Gharizadeh B. PLoS ONE. 2008 Jul 16;3(7):e2693. [PubMed], [Publisher Full Text]
140. Conformational flexibility of a model protein upon immobilization on self-assembled monolayers.
     Bigdeli S, Talasaz AH, Ståhl P, Persson HH, Ronaghi M, Davis RW, Nemat-Gorgani M. Biotechnol Bioeng. 2008 May 1;100(1):19-27. [PubMed], [Full Text PDF]
141. The chemical genomic portrait of yeast: uncovering a phenotype for all genes.
     Hillenmeyer, M. E. Fung, E. Wildenhain, J. Pierce, S. E. Hoon, S. Lee, W. Proctor, M. St Onge, R. P. Tyers, M. Koller, D. Altman, R. B. Davis, R. W. Nislow, C. Giaever, G. Science. 2008 Apr 18;320(5874):362-5. PMCID: 2794835. [PubMed], [Publisher Full Text]
142. Microfluidic leukocyte isolation for gene expression analysis in critically ill hospitalized patients.
     Russom, A. Sethu, P. Irimia, D. Mindrinos, M. N. Calvano, S. E. Garcia, I. Finnerty, C. Tannahill, C. Abouhamze, A. Wilhelmy, J. Lopez, M. C. Baker, H. V. Herndon, D. N. Lowry, S. F. Maier, R. V. Davis, R. W. Moldawer, L. L. Tompkins, R. G. Toner, M. Clin Chem. 2008 May;54(5):891-900. Epub 2008 Mar 28. [PubMed], [Publisher Full Text]
143. Bisphenol A induces a profile of tumor aggressiveness in high-risk cells from breast cancer patients.
     Dairkee, S. H. Seok, J. Champion, S. Sayeed, A. Mindrinos, M. Xiao, W. Davis, R. W. Goodson, W. H. Cancer Res. 2008 Apr 1;68(7):2076-80. [PubMed], [Publisher Full Text]
144. An integrated platform of genomic assays reveals small-molecule bioactivities.
     Hoon, S. Smith, A. M. Wallace, I. M. Suresh, S. Miranda, M. Fung, E. Proctor, M. Shokat, K. M. Zhang, C. Davis, R. W. Giaever, G. StOnge, R. P. Nislow, C. Nat Chem Biol. 2008 Aug;4(8):498-506. Epub 2008 Jul 11. [PubMed], [Publisher Full Text]
145. A pico-calorimetric method for DNA sequencing.
     Esfandyarpour, H.; Pease, R.F.W.; Davis, R.W. J. Vac Sci. and Technol. B 26(2), 2008.
146. Real Time Simulation of Pyrophosphate Concentration and Heat Detection in Thermosequencing.
     Esfandyarpour, H. Zheng, B. Pease, RFW. Davis, R.W. Biomicrofluidics 2(1), 2008.
147. Gate-Controlled Microfluidic with Magnetic Bead in DNA Sequencing.
     Esfandyarpour, H. Davis R.W. invited and to appear in International Journal of Microfluidics and Nanofluidics.
148. A system for multiplexed direct electrical detection of DNA synthesis.
     Anderson, E. P. Daniels, J. S. Yu, H. Karhanek, M. Lee, T. H. Davis, R. W. Pourmand, N. Sensors and Actuators B: Chemical 129(1):79-86, 29 January 2008. PMCID: 2344141. [Full Text]
     
149. Multiplexed proximity ligation assays to profile putative plasma biomarkers relevant to pancreatic and ovarian cancer.
     Fredriksson, S. Horecka, J. Terje Brustugun, O. Schlingemann, J. Koong, A. C. Tibshirani, R. Davis, R. W. Clin Chem 54(3):582-9 (2008). [PubMed], [Publisher Full Text]
150. Interference of globin genes with biomarker discovery for allograft rejection in peripheral blood samples.
     Li, L. Ying, L. Naesens, M. Xiao, W. Sigdel, T. Hsieh, S. Martin, J. Chen, R. Liu, K. Mindrinos, M. Davis, R. Sarwal, M. Physiol Genomics 32(2):190-7 (2008). [PubMed], [Publisher Full Text]
151. High-throughput creation of a whole-genome collection of yeast knockout strains.
     Chu, A. M. Davis, R. W. Methods Mol Biol. 2008;416:205-20. [PubMed], [Publisher Full Text]
152. Genome-wide analysis of barcoded Saccharomyces cerevisiae gene-deletion mutants in pooled cultures.
     Pierce, S. E. Davis, R. W. Nislow, C. Giaever, G. Nat Protoc 2(11):2958-74 (2007). [PubMed], [Publisher Full Text]
153. Diverse cellular functions of the Hsp90 molecular chaperone uncovered using systems approaches.
     McClellan, A. J. Xia, Y. Deutschbauer, A. M. Davis, R. W. Gerstein, M. Frydman, J. Cell 131(1):121-35 (2007). [PubMed], [Publisher Full Text]
154. Conformational flexibility of a model protein upon immobilization on selfassembled monolayers.
     Bigdeli, S. Talasaz, A. H. Stahl, P. Persson, H. H. Ronaghi, M. Davis, R. W. Nemat-Gorgani, M. Biotechnol Bioeng. (2007). [PubMed], [Publisher]
155. A novel catechol-based universal support for oligonucleotide synthesis.
     Anderson, K.M. Jaquinod, L. Jensen, M.A. Ngo, N. Davis, R.W. J Org Chem 72(26):9875-80 (2007). [PubMed], [Publisher Full Text]
156. Connector inversion probe technology: a powerful one-primer multiplex DNA amplification system for numerous scientific applications.
     Akhras, M.S. Unemo, M. Thiyagarajan, S. Nyren, P. Davis, R.W. Fire, A.Z. Pourmand, N. PLoS ONE 2(9):e915 (2007). [PubMed], [Publisher Full Text]
157. A high-resolution atlas of nucleosome occupancy in yeast.
     Lee, W. Tillo, D. Bray, N. Morse, R. H. Davis, R.W. Hughes, T. R. Nislow, C. Nat Genet 39(10):1235-44 (2007). [PubMed], [Publisher Full Text]
158. Unusual selection on the KIR3DL1/S1 natural killer cell receptor in Africans.
     Norman, P. J. Abi-Rached, L. Gendzekhadze, K. Korbel, D. Gleimer, M. Rowley, D. Bruno, D. Carrington, C.V. Chandanayingyong, D. Chang, Y.H. Crespi, C. Saruhan-Direskeneli, G. Fraser, P.A. Hameed, K. Kamkamidze, G. Koram, K. A. Layrisse, Z. Matamoros, N. Mila, J. Park, M. H. Pitchappan, R. M. Ramdath, D.D. Shiau, M.Y. Stephens, H.A. Struik, S. Verity, D.H. Vaughan, R.W. Tyan, D. Davis, R.W. Riley, E.M. Ronaghi, M. Parham, P. Nat Genet 39(9):1092-9 (2007). [PubMed], [Publisher Full Text]
159. PathogenMip assay: a multiplex pathogen detection assay.
     Akhras, M.S. Thiyagarajan, S. Villablanca, A.C. Davis, R.W. Nyren, P. Pourmand, N. PLoS ONE 2(2):e223 (2007). [PubMed], [Publisher Full Text]
160. Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789.
     Wei W, McCusker JH, Hyman RW, Jones T, Ning Y, Cao Z, Gu Z, Bruno D, Miranda M, Nguyen M, Wilhelmy J, Komp C, Tamse R, Wang X, Jia P, Luedi P, Oefner PJ, David L, Dietrich FS, Li Y, Davis RW, Steinmetz LM. Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12825-30. Epub 2007 Jul 25. [PubMed]
161. Multigene amplification and massively parallel sequencing for cancer mutation discovery.
     Dahl F, Stenberg J, Fredriksson S, Welch K, Zhang M, Nilsson M, Bicknell D, Bodmer WF, Davis RW, Ji H. Proc Natl Acad Sci U S A. 2007 May 17; [Epub ahead of print] [PubMed]
162. Branch migration displacement assay with automated heuristic analysis for discrete DNA length measurement using DNA microarrays.
     Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6146-51. Epub 2007 Mar 27. [PubMed]
163. Multiplexed protein detection by proximity ligation for cancer biomarker validation.
     Fredriksson S, Dixon W, Ji H, Koong AC, Mindrinos M, Davis RW. Nat Methods. 2007 Apr;4(4):327-9. Epub 2007 Mar 18. [PubMed]
164. Multiplex amplification of all coding sequences within 10 cancer genes by Gene-Collector.
     Fredriksson S, Baner J, Dahl F, Chu A, Ji H, Welch K, Davis RW. Nucleic Acids Res. 2007;35(7):e47. Epub 2007 Feb 22. [PubMed]
165. PathogenMip Assay: A Multiplex Pathogen Detection Assay.
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166. Accelerating the discovery of biologically active small molecules using a high-throughput yeast halo assay.
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167. High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing.
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168. Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions.
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169. Rapid and Highly Informative Diagnostic Assay for H5N1 Influenza Viruses.
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170. Reproducibility Probability Score--incorporating measurement variability across laboratories for gene selection.
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171. PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens.
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172. Current rectification with poly-l-lysine-coated quartz nanopipettes.
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173. Cell-specific expression and pathway analyses reveal alterations in trauma-related human T cell and monocyte pathways.
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174. A high-resolution map of transcription in the yeast genome.
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175. Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae.
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176. A haplotype framework for cystic fibrosis mutations in Iran.
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177. Data quality in genomics and microarrays.
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178. Molecular inversion probe analysis of gene copy alterations reveals distinct categories of colorectal carcinoma.
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179. Introns regulate RNA and protein abundance in yeast.
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180. High dynamic range characterization of the trauma patient plasma proteome.
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181. A unique and universal molecular barcode array.
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182. Direct electrical detection of DNA synthesis.
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183. Prediction of protein orientation upon immobilization on biological and nonbiological surfaces.
     Talasaz, A.H., Nemat-Gorgani, M., Liu, Y., Stahl, P., Dutton, R.W., Ronaghi, M. & Davis, R.W. Proc Natl Acad Sci U S A 103, 14773-8 (2006). [PubMed]
184. Analysis of hybridization on the molecular barcode GeneChip microarray.
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185. Transcriptional profiling of aging in human muscle reveals a common aging signature.
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186. Profiling early infection responses: Pseudomonas aeruginosa eludes host defenses by suppressing antimicrobial peptide gene expression.
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187. A network-based analysis of systemic inflammation in humans.
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188. Application of genome-wide expression analysis to human health and disease.
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189. Quantitative trait loci mapped to single-nucleotide resolution in yeast.
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190. Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast.
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191. Multiplexed variation scanning for 1,000 amplicons in hundreds of patients using mismatch repair detection (MRD) on tag arrays.
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192. A latent variable model for chemogenomic profiling.
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193. Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae.
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194. Highly multiplexed molecular inversion probe genotyping: over 10,000 targeted SNPs genotyped in a single tube assay.
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195. Bioluminescence regenerative cycle (BRC) system: theoretical considerations for nucleic acid quantification assays.
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196. Microbes on the human vaginal epithelium.
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197. Single DNA molecule detection using nanopipettes and nanoparticles.
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198. A novel method for STR-based DNA profiling using microarrays.
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199. Genome-Wide Requirements for Resistance to Functionally Distinct DNA-Damaging Agents.
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200. The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans.
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201. Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry.
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202. Quantitative Proteome Analysis of Human Plasma following in Vivo Lipopolysaccharide Administration Using 16O/18O Labeling and the Accurate Mass and Time Tag Approach.
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203. A multi-enzyme model for Pyrosequencing.
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204. Characterization of synthetic DNA bar codes in Saccharomyces cerevisiae gene-deletion strains.
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205. SNP discovery in pooled samples with mismatch repair detection.
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206. Inflammation and Host Response to Injury, Large-Scale Collaborative Research Program. Whole blood and leukocyte RNA isolation for gene expression analyses.
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207. Genomic and proteomic determinants of outcome in patients undergoing thoracoabdominal aortic aneurysm repair.
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208. Chemogenomic profiling: identifying the functional interactions of small molecules in yeast.
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209. The diploid genome sequence of Candida albicans.
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210. Regulatory networks affected by iron availability in Candida albicans.
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211. Sister-chromatid cohesion mediated by the alternative RF-CCtf18/Dcc1/Ctf8, the helicase Chl1 and the polymerase-alpha-associated protein Ctf4 is essential for chromatid disjunction during meiosis II.
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212. Integrative analysis of the mitochondrial proteome in yeast.
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213. A transcriptional profile of aging in the human kidney.
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214. Ultra-high-efficiency strong cation exchange LC/RPLC/MS/MS for high dynamic range characterization of the human plasma proteome.
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215. Maximizing the potential of functional genomics.
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216. To give or not to give? That is the question.
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217. A genome-wide study of gene activity reveals developmental signaling pathways in the preimplantation mouse embryo.
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218. GermOnline, a cross-species community knowledgebase on germ cell differentiation.
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219. Role of duplicated genes in genetic robustness against null mutations.
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220. Multiplexed genotyping with sequence-tagged molecular inversion probes.
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221. Empirical analysis of transcriptional activity in the Arabidopsis genome.
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222. Genotyping African haplotypes in ATM using a co-spotted single-base extension assay.
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223. Region-specific changes in immediate early gene expression in response to sleep deprivation and recovery sleep in the mouse brain.
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224. Differential increase in the expression of heat shock protein family members during sleep deprivation and during sleep.
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225. Contributions of ATM mutations to familial breast and ovarian cancer.
     Thorstenson, Y.R., Roxas, A., Kroiss, R., Jenkins, M.A., Yu, K.M., Bachrich, T., Muhr, D., Wayne, T.L., Chu, G., Davis, R.W., Wagner, T.M. & Oefner, P.J. Cancer Res 63, 3325-33 (2003). [PubMed]
226. Determination of hepatitis C virus genotype by Pyrosequencing.
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227. The Ume6 regulon coordinates metabolic and meiotic gene expression in yeast.
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228. Sequence of Plasmodium falciparum chromosome 12.
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229. Genome sequence of the human malaria parasite Plasmodium falciparum.
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230. Gene expression during the life cycle of Drosophila melanogaster.
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231. Functional profiling of the Saccharomyces cerevisiae genome.
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232. Systematic screen for human disease genes in yeast.
     Steinmetz, L.M., Scharfe, C., Deutschbauer, A.M., Mokranjac, D., Herman, Z.S., Jones, T., Chu, A.M., Giaever, G., Prokisch, H., Oefner, P.J. & Davis, R.W. Nat Genet 31, 400-4 (2002). [PubMed]
233. Transcriptional response of Saccharomyces cerevisiae to DNA-damaging agents does not identify the genes that protect against these agents.
     Birrell, G.W., Brown, J.A., Wu, H.I., Giaever, G., Chu, A.M., Davis, R.W. & Brown, J.M. Proc Natl Acad Sci U S A 99, 8778-83 (2002). [PubMed]
234. Multiplex Pyrosequencing.
     Pourmand, N., Elahi, E., Davis, R.W. & Ronaghi, M. Nucleic Acids Res 30, e31 (2002). [PubMed]
235. Dissecting the architecture of a quantitative trait locus in yeast.
     Steinmetz, L.M., Sinha, H., Richards, D.R., Spiegelman, J.I., Oefner, P.J., McCusker, J.H. & Davis, R.W. Nature 416, 326-30 (2002). [PubMed]
236. Identification and preliminary characterization of mouse Adam33.
     Gunn, T.M., Azarani, A., Kim, P.H., Hyman, R.W., Davis, R.W. & Barsh, G.S. BMC Genet 3, 2 (2002). [PubMed]
237. Parallel phenotypic analysis of sporulation and postgermination growth in Saccharomyces cerevisiae.
     Deutschbauer, A.M., Williams, R.M., Chu, A.M. & Davis, R.W. Proc Natl Acad Sci U S A 99, 15530-5 (2002). [PubMed]
238. Metabolic specialization associated with phenotypic switching in Candida albicans.
     Lan, C.Y., Newport, G., Murillo, L.A., Jones, T., Scherer, S., Davis, R.W. & Agabian, N. Proc Natl Acad Sci U S A 99, 14907-12 (2002). [PubMed]
239. Yeast tRNA as carrier in the isolation of microscale RNA for global amplification and expression profiling.
     Wang, Q.T., Xiao, W., Mindrinos, M. & Davis, R.W. Biotechniques 33, 788, 790, 792 passim (2002). [PubMed]
240. A genome-wide screen in Saccharomyces cerevisiae for genes affecting UV radiation sensitivity.
     Birrell, G.W., Giaever, G., Chu, A.M., Davis, R.W. & Brown, J.M. Proc Natl Acad Sci U S A 98, 12608-13 (2001). [PubMed]
241. Replication dynamics of the yeast genome.
     Raghuraman, M.K., Winzeler, E.A., Collingwood, D., Hunt, S., Wodicka, L., Conway, A., Lockhart, D.J., Davis, R.W., Brewer, B.J. & Fangman, W.L. Science 294, 115-21 (2001). [PubMed]
242. Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid.
     Barnett, M.J., Fisher, R.F., Jones, T., Komp, C., Abola, A.P., Barloy-Hubler, F., Bowser, L., Capela, D., Galibert, F., Gouzy, J., Gurjal, M., Hong, A., Huizar, L., Hyman, R.W., Kahn, D., Kahn, M.L., Kalman, S., Keating, D.H., Palm, C., Peck, M.C., Surzycki, R., Wells, D.H., Yeh, K.C., Davis, R.W., Federspiel, N.A. & Long, S.R. Proc Natl Acad Sci U S A 98, 9883-8 (2001). [PubMed]
243. The composite genome of the legume symbiont Sinorhizobium meliloti.
     Galibert, F., Finan, T.M., Long, S.R., Puhler, A., Abola, P., Ampe, F., Barloy-Hubler, F., Barnett, M.J., Becker, A., Boistard, P., Bothe, G., Boutry, M., Bowser, L., Buhrmester, J., Cadieu, E., Capela, D., Chain, P., Cowie, A., Davis, R.W., Dreano, S., Federspiel, N.A., Fisher, R.F., Gloux, S., Godrie, T., Goffeau, A., Golding, B., Gouzy, J., Gurjal, M., Hernandez-Lucas, I., Hong, A., Huizar, L., Hyman, R.W., Jones, T., Kahn, D., Kahn, M.L., Kalman, S., Keating, D.H., Kiss, E., Komp, C., Lelaure, V., Masuy, D., Palm, C., Peck, M.C., Pohl, T.M., Portetelle, D., Purnelle, B., Ramsperger, U., Surzycki, R., Thebault, P., Vandenbol, M., Vorholter, F.J., Weidner, S., Wells, D.H., Wong, K., Yeh, K.C. & Batut, J. Science 293, 668-72 (2001). [PubMed]
244. Expression monitoring using cDNA microarrays. A general protocol.
     Lou, X.J., Schena, M., Horrigan, F.T., Lawn, R.M. & Davis, R.W. Methods Mol Biol 175, 323-40 (2001). [PubMed]
245. Genomic evidence for a complete sexual cycle in Candida albicans.
     Tzung, K.W., Williams, R.M., Scherer, S., Federspiel, N., Jones, T., Hansen, N., Bivolarevic, V., Huizar, L., Komp, C., Surzycki, R., Tamse, R., Davis, R.W. & Agabian, N. Proc Natl Acad Sci U S A 98, 3249-53 (2001). [PubMed]
246. Initial sequencing and analysis of the human genome.
     Lander, E.S., Linton, L.M., Birren, B., Nusbaum, C., Zody, M.C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., et al. Nature 409, 860-921 (2001). [PubMed]
247. A method for parallel, automated, thermal cycling of submicroliter samples.
     Nakane, J., Broemeling, D., Donaldson, R., Marziali, A., Willis, T.D., O'Keefe, M. & Davis, R.W. Genome Res 11, 441-7 (2001). [PubMed]
248. Transcriptional regulation and function during the human cell cycle.
     Cho, R.J., Huang, M., Campbell, M.J., Dong, H., Steinmetz, L., Sapinoso, L., Hampton, G., Elledge, S.J., Davis, R.W. & Lockhart, D.J. Nat Genet 27, 48-54 (2001). [PubMed]
249. Mapping genes in Saccharomyces cerevisiae and arabidopsis thaliana using high-density DNA arrays and denaturing high-performance liquid chromatography.
     Steinmetz, L., Mindrinos, M., Spiegelman, J., Richards, D., Xiao, W., Fankhauser, C., McCusker, J., Chory, J., Davis, R., Oefner, P. Hum. Mutat 17, 323 (2001).
250. Global analysis of ATM polymorphism reveals significant functional constraint.
     Thorstenson, Y.R., Shen, P., Tusher, V.G., Wayne, T.L., Davis, R.W., Chu, G. & Oefner, P.J. Am J Hum Genet 69, 396-412 (2001). [PubMed]
251. High-density arrays and insights into genome function.
     Steinmetz, L.M. & Davis, R.W. Biotechnol Genet Eng Rev 17, 109-46 (2000).
252. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.
     Theologis, A., Ecker, J.R., Palm, C.J., Federspiel, N.A., Kaul, S., White, O., Alonso, J., Altafi, H., Araujo, R., Bowman, C.L., Brooks, S.Y., Buehler, E., Chan, A., Chao, Q., Chen, H., Cheuk, R.F., Chin, C.W., Chung, M.K., Conn, L., Conway, A.B., Conway, A.R., Creasy, T.H., Dewar, K., Dunn, P., Etgu, P., Feldblyum, T.V., Feng, J., Fong, B., Fujii, C.Y., Gill, J.E., Goldsmith, A.D., Haas, B., Hansen, N.F., Hughes, B., Huizar, L., Hunter, J.L., Jenkins, J., Johnson-Hopson, C., Khan, S., Khaykin, E., Kim, C.J., Koo, H.L., Kremenetskaia, I., Kurtz, D.B., Kwan, A., Lam, B., Langin-Hooper, S., Lee, A., Lee, J.M., Lenz, C.A., Li, J.H., Li, Y., Lin, X., Liu, S.X., Liu, Z.A., Luros, J.S., Maiti, R., Marziali, A., Militscher, J., Miranda, M., Nguyen, M., Nierman, W.C., Osborne, B.I., Pai, G., Peterson, J., Pham, P.K., Rizzo, M., Rooney, T., Rowley, D., Sakano, H., Salzberg, S.L., Schwartz, J.R., Shinn, P., Southwick, A.M., Sun, H., Tallon, L.J., Tambunga, G., Toriumi, M.J., Town, C.D., Utterback, T., Van Aken, S., Vaysberg, M., Vysotskaia, V.S., Walker, M., Wu, D., Yu, G., Fraser, C.M., Venter, J.C. & Davis, R.W. Nature 408, 816-20 (2000). [PubMed]
253. A simple procedure for the analysis of single nucleotide polymorphisms facilitates map-based cloning in Arabidopsis.
     Drenkard, E., Richter, B.G., Rozen, S., Stutius, L.M., Angell, N.A., Mindrinos, M., Cho, R.J., Oefner, P.J., Davis, R.W. & Ausubel, F.M. Plant Physiol 124, 1483-92 (2000). [PubMed]
254. The core meiotic transcriptome in budding yeasts.
     Primig, M., Williams, R.M., Winzeler, E.A., Tevzadze, G.G., Conway, A.R., Hwang, S.Y., Davis, R.W. & Esposito, R.E. Nat Genet 26, 415-23 (2000). [PubMed]
255. Prevalence of small inversions in yeast gene order evolution.
     Seoighe, C., Federspiel, N., Jones, T., Hansen, N., Bivolarovic, V., Surzycki, R., Tamse, R., Komp, C., Huizar, L., Davis, R.W., Scherer, S., Tait, E., Shaw, D.J., Harris, D., Murphy, L., Oliver, K., Taylor, K., Rajandream, M.A., Barrell, B.G. & Wolfe, K.H. Proc Natl Acad Sci U S A 97, 14433-7 (2000). [PubMed]
256. Functional analysis of the yeast genome by precise deletion and parallel phenotypic characterization.
     Winzeler, E.A., Liang, H., Shoemaker, D.D. & Davis, R.W. Novartis Found Symp 229, 105-9; discussion 109-11 (2000). [PubMed]
257. Y chromosome sequence variation and the history of human populations.
     Underhill, P.A., Shen, P., Lin, A.A., Jin, L., Passarino, G., Yang, W.H., Kauffman, E., Bonne-Tamir, B., Bertranpetit, J., Francalacci, P., Ibrahim, M., Jenkins, T., Kidd, J.R., Mehdi, S.Q., Seielstad, M.T., Wells, R.S., Piazza, A., Davis, R.W., Feldman, M.W., Cavalli-Sforza, L.L. & Oefner, P.J. Nat Genet 26, 358-61 (2000). [PubMed]
258. Real-time PCR-based method for assaying the purity of bacterial artificial chromosome preparations.
     Foreman, P.K. & Davis, R.W. Biotechniques 29, 410-2 (2000). [PubMed]
259. Population genetic implications from sequence variation in four Y chromosome genes.
     Shen, P., Wang, F., Underhill, P.A., Franco, C., Yang, W.H., Roxas, A., Sung, R., Lin, A.A., Hyman, R.W., Vollrath, D., Davis, R.W., Cavalli-Sforza, L.L. & Oefner, P.J. Proc Natl Acad Sci U S A 97, 7354-9 (2000). [PubMed]
260. Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays.
     Aharoni, A., Keizer, L.C., Bouwmeester, H.J., Sun, Z., Alvarez-Huerta, M., Verhoeven, H.A., Blaas, J., van Houwelingen, A.M., De Vos, R.C., van der Voet, H., Jansen, R.C., Guis, M., Mol, J., Davis, R.W., Schena, M., van Tunen, A.J. & O'Connell, A.P. Plant Cell 12, 647-62 (2000). [PubMed]
261. DAtA: database of Arabidopsis thaliana annotation.
     Palm, C.J., Federspiel, N.A. & Davis, R.W. Nucleic Acids Res 28, 102-3 (2000). [PubMed]
262. Comprehensive mutational analysis of the ATM gene by denaturing HPLC.
     Thorstenson, Y.R., Oefner, P.J., Goss, V., Davis, R.W., Gatti, R.A., Chu, G. Am. J. Hum. Genet 67 [Suppl. 2], 100 (2000).
263. Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae.
     ter Linde, J.J., Liang, H., Davis, R.W., Steensma, H.Y., van Dijken, J.P. & Pronk, J.T. J Bacteriol 181, 7409-13 (1999). [PubMed]
264. Genome-wide mapping with biallelic markers in Arabidopsis thaliana.
     Cho, R.J., Mindrinos, M., Richards, D.R., Sapolsky, R.J., Anderson, M., Drenkard, E., Dewdney, J., Reuber, T.L., Stammers, M., Federspiel, N., Theologis, A., Yang, W.H., Hubbell, E., Au, M., Chung, E.Y., Lashkari, D., Lemieux, B., Dean, C., Lipshutz, R.J., Ausubel, F.M., Davis, R.W. & Oefner, P.J. Nat Genet 23, 203-7 (1999). [PubMed]
265. Whole genome genetic-typing in yeast using high-density oligonucleotide arrays.
     Winzeler, E.A., Lee, B., McCusker, J.H. & Davis, R.W. Parasitology 118 Suppl, S73-80 (1999). [PubMed]
266. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis.
     Winzeler, E.A., Shoemaker, D.D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J.D., Bussey, H., Chu, A.M., Connelly, C., Davis, K., Dietrich, F., Dow, S.W., El Bakkoury, M., Foury, F., Friend, S.H., Gentalen, E., Giaever, G., Hegemann, J.H., Jones, T., Laub, M., Liao, H., Davis, R.W. & et al. Science 285, 901-6 (1999). [PubMed]
267. Fluorescence-based expression monitoring using microarrays.
     Winzeler, E.A., Schena, M. & Davis, R.W. Methods Enzymol 306, 3-18 (1999). [PubMed]
268. An automated sample preparation system for large-scale DNA sequencing.
     Marziali, A., Willis, T.D., Federspiel, N.A. & Davis, R.W. Genome Res 9, 457-62 (1999). [PubMed]
269. Comparative genomes of Chlamydia pneumoniae and C. trachomatis.
     Kalman, S., Mitchell, W., Marathe, R., Lammel, C., Fan, J., Hyman, R.W., Olinger, L., Grimwood, J., Davis, R.W. & Stephens, R.S. Nat Genet 21, 385-9 (1999). [PubMed]
270. Distribution of haplotypes from a chromosome 21 region distinguishes multiple prehistoric human migrations.
     Jin, L., Underhill, P.A., Doctor, V., Davis, R.W., Shen, P., Cavalli-Sforza, L.L. & Oefner, P.J. Proc Natl Acad Sci U S A 96, 3796-800 (1999). [PubMed]
271. The mouse mahogany locus encodes a transmembrane form of human attractin.
     Gunn, T.M., Miller, K.A., He, L., Hyman, R.W., Davis, R.W., Azarani, A., Schlossman, S.F., Duke-Cohan, J.S. & Barsh, G.S. Nature 398, 152-6 (1999). [PubMed]
272. Genomic profiling of drug sensitivities via induced haploinsufficiency.
     Giaever, G., Shoemaker, D.D., Jones, T.W., Liang, H., Winzeler, E.A., Astromoff, A. & Davis, R.W. Nat Genet 21, 278-83 (1999). [PubMed]
273. On the in vivo function of the RecA ATPase.
     Campbell, M.J. & Davis, R.W. J Mol Biol 286, 437-45 (1999). [PubMed]
274. Toxic mutations in the recA gene of E. coli prevent proper chromosome segregation.
     Campbell, M.J. & Davis, R.W. J Mol Biol 286, 417-35 (1999). [PubMed]
275. An arrayable flow-through microcentrifuge for high-throughput instrumentation.
     Marziali, A., Willis, T.D. & Davis, R.W. Proc Natl Acad Sci U S A 96, 61-6 (1999). [PubMed]
276. Plasmodium falciparum 3D7 chromosome 12 YAC B8-95 genomic sequence. GenBank: accession number AC006281.
     Hyman, R.W., Fung, E., Qin, F., Tomaki, T., Kurdi, O., Davis, R.W. (1999).
277. Plasmodium falciparium 3D7 chromosome 12 YAC 614 genomic sequence. GenBank: accession number AC006279.
     Hyman, R.W., Fung, E., Qin, F., Tomaki, T., Kurdi, O., Davis, R.W. (1999).
278. Plasmodium falciparum 3D7 chromosome 12 YAC 724 genomic sequence. GenBank: accession number AC006280.
     Hyman, R.W., Fung, E., Qin, F., Tomaki, T., Kurdi, O., Davis, R.W. (1999).
279. Genes, Genomes and Chips, in DNA Microarrays: A Practical Approach.
     Schena, M., Davis, R.W. (ed. Schena, M.) 1-16 (Oxford University Press, Oxford, United Kingdom, 1999).
280. Parallel analysis with Biological Chips.
     Schena, M., Davis, R.W. in PCR Applications 445-456 (Academic Press, 1999).
281. Y-Chromosome evidence for a northward migration of modern humans into Eastern Asia during the last Ice Age.
     Su, B., Xiao, J., Underhill, P., Deka, R., Zhang, W., Akey, J., Huang, W., Shen, D., Lu, D., Luo, J., Chu, J., Tan, J., Shen, P., Davis, R., Cavalli-Sforza, L., Chakraborty, R., Xiong, M., Du, R., Oefner, P., Chen, Z. & Jin, L. Am J Hum Genet 65, 1718-24 (1999). [PubMed]
282. A low rate of nucleotide changes in Escherichia coli K-12 estimated from a comparison of the genome sequences between two different substrains.
     Itoh T, Okayama T, Hashimoto H, Takeda J, Davis RW, Mori H, Gojobori T. FEBS Lett. 1999 Apr 30;450(1-2):72-6. [PubMed]
283. Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis.
     Stephens, R.S., Kalman, S., Lammel, C., Fan, J., Marathe, R., Aravind, L., Mitchell, W., Olinger, L., Tatusov, R.L., Zhao, Q., Koonin, E.V. & Davis, R.W. Science 282, 754-9 (1998). [PubMed]
284. An automated hydrodynamic process for controlled, unbiased DNA shearing.
     Thorstenson, Y.R., Hunicke-Smith, S.P., Oefner, P.J. & Davis, R.W. Genome Res 8, 848-55 (1998). [PubMed]
285. Direct allelic variation scanning of the yeast genome.
     Winzeler, E.A., Richards, D.R., Conway, A.R., Goldstein, A.L., Kalman, S., McCullough, M.J., McCusker, J.H., Stevens, D.A., Wodicka, L., Lockhart, D.J. & Davis, R.W. Science 281, 1194-7 (1998). [PubMed]
286. A genome-wide transcriptional analysis of the mitotic cell cycle.
     Cho, R.J., Campbell, M.J., Winzeler, E.A., Steinmetz, L., Conway, A., Wodicka, L., Wolfsberg, T.G., Gabrielian, A.E., Landsman, D., Lockhart, D.J. & Davis, R.W. Mol Cell 2, 65-73 (1998). [PubMed]
287. Microarrays: biotechnology's discovery platform for functional genomics.
     Schena, M., Heller, R.A., Theriault, T.P., Konrad, K., Lachenmeier, E. & Davis, R.W. Trends Biotechnol 16, 301-6 (1998). [PubMed]
288. Mapping cloned sequences on YACs.
     Agyare, F.D., Lagos, G., Lashkari, D., Davis, R.W. & Lemieux, B. Methods Mol Biol 82, 199-208 (1998). [no abstract available]
289. Parallel analysis of genetic selections using whole genome oligonucleotide arrays.
     Cho, R.J., Fromont-Racine, M., Wodicka, L., Feierbach, B., Stearns, T., Legrain, P., Lockhart, D.J. & Davis, R.W. Proc Natl Acad Sci U S A 95, 3752-7 (1998). [PubMed]
290. Plasmodium falciparum 3D7 chromosome 12 PFYAC812 genomic sequence. GenBank: accession number AC004153.
     Hyman, R.W., Qin, F., Fung, E.L., Conway, A.B., Davis, R.W. (1998).
291. Plasmodium falciparum 3D7 chromosome 12 PFYAC293 genomic sequence. GenBank: accession number AC004157.
     Hyman, R.W., Qin, F., Fung, E.L., Conway, A.B., Davis, R.W. (1998).
292. Plasmodium falciparum 3D7 chromosome 12 YAC 812 genomic sequence. GenBank: accession number AC004153.
     Hyman, R.W., Qin, F., Fung, E., Conway, A., Davis, R.W. (1998).
293. Plasmodium falciparum 3D7 chromosome 12 YAC 69 genomic sequence. GenBank: accession number AC004688.
     Hyman, R.W., Qin, F., Fung, E., Conway, A., Davis, R.W. (1998).
294. Plasmodium falciparum 3D7 chromosome 12 YAC 588 genomic sequence. GenBank: accession number AC004710.
     Hyman, R.W., Qin, F., Fung, E., Conway, A., Davis, R.W. (1998).
295. Plasmodium falciparum 3D7 chromosome 12 YAC 1122 genomic sequence. GenBank: accession number AC004709. Hyman, R.W., Qin, F., Fung, E., Conway, A., Davis, R.W.(1998).
296. Plasmodium falciparum 3D7 chromosome 12 YAC B8-420 genomic sequence. GenBank: accession number AC005140.
     Hyman, R.W., Fung, E., Qin, F., Conway, A., Davis, Ronald W. (1998).
297. Plasmodium falciparum 3D7 chromosome 12 YAC 336 genomic sequence. GenBank: accession number AC005139.
     Hyman, R.W., Fung, E., Qin, F., Conway, A., Davis, R.W. (1998).
298. Plasmodium falciparum 3D7 chromosome 12 YAC 492 genomic sequence. GenBank: accession number AC005308.
     Hyman, R.W., Fung, E., Qin, F., Conway, A., Davis, R.W. (1998).
299. Plasmodium falciparum 3D7 chromosome 12 YAC 1383 genomic sequence. GenBank: accession number AC005504.
     Hyman, R.W., Fung, E., Qin, F., Conway, A.B., Davis, R.W. (1998).
300. Plasmodium falciparum 3D7 chromosome 12 YAC 181 genomic sequence. GenBank: accession number AC005505.
     Hyman, R.W., Qin, F., Fung, E.L., Conway, A.B., Davis, R.W. (1998).
301. Plasmodium falciparum 3D7 chromosome 12 YAC 357 genomic sequence. GenBank: accession number AC005506.
     Hyman, R.W., Qin, F., Fung, E.L., Conway, A.B., Davis, R.W. (1998).
302. Plasmodium falciparum 3D7 chromosome 12 YAC B8-628 genomic sequence. GenBank: accession number AC005507.
     Hyman, R.W., Qin, F., Fung, E.L., Conway, A.B., Davis, R.W. (1998).
303. Panorama of Y chromosome SNP haplotype diversity in Pakistan.
     Underhill, P.A., Mehdi, S.Q., Cavalli-Sforza, L.L., Davis, R.W., Oefner, P.J. Am. J. Hum. Genet 63 [Suppl.], A223 (1998). [no abstract available]
304. Functional analysis of the yeast genome.
     Winzeler, E.A. & Davis, R.W. Curr Opin Genet Dev 7, 771-6 (1997). [PubMed]
305. Yeast microarrays for genome wide parallel genetic and gene expression analysis.
     Lashkari, D.A., DeRisi, J.L., McCusker, J.H., Namath, A.F., Gentile, C., Hwang, S.Y., Brown, P.O. & Davis, R.W. Proc Natl Acad Sci U S A 94, 13057-62 (1997). [PubMed]
306. Detection of numerous Y chromosome biallelic polymorphisms by denaturing high-performance liquid chromatography.
     Underhill, P.A., Jin, L., Lin, A.A., Mehdi, S.Q., Jenkins, T., Vollrath, D., Davis, R.W., Cavalli-Sforza, L.L. & Oefner, P.J. Genome Res 7, 996-1005 (1997). [PubMed]
307. Whole genome analysis: experimental access to all genome sequenced segments through larger-scale efficient oligonucleotide synthesis and PCR.
     Lashkari, D.A., McCusker, J.H. & Davis, R.W. Proc Natl Acad Sci U S A 94, 8945-7 (1997). [PubMed]
308. Ca(2+)-activated anion channels and membrane depolarizations induced by blue light and cold in Arabidopsis seedlings.
     Lewis, B.D., Karlin-Neumann, G., Davis, R.W. & Spalding, E.P. Plant Physiol 11, 1327-34 (1997). [PubMed]
309. Application of DNA typing methods and genetic analysis to epidemiology and taxonomy of Saccharomyces isolates.
     Clemons, K.V., Park, P., McCusker, J.H., McCullough, M.J., Davis, R.W. & Stevens, D.A. J Clin Microbiol 35, 1822-8 (1997). [PubMed]
310. The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI.
     Bussey, H., Storms, R.K., Ahmed, A., Albermann, K., Allen, E., Ansorge, W., Araujo, R., Aparicio, A., Barrell, B., Badcock, K., Benes, V., Botstein, D., Bowman, S., Bruckner, M., Carpenter, J., Cherry, J.M., Chung, E., Churcher, C., Coster, F., Davis, K., Davis, R.W., Dietrich, F.S., Delius, H., DiPaolo, T., Hani, J. & et al. Nature 387, 103-5 (1997). [PubMed]
311. Discovery and analysis of inflammatory disease-related genes using cDNA microarrays.
     Heller, R.A., Schena, M., Chai, A., Shalon, D., Bedilion, T., Gilmore, J., Woolley, D.E. & Davis, R.W. Proc Natl Acad Sci U S A 94, 2150-5 (1997). [PubMed]
312. Mapping expressed sequence tag sites on yeast artificial chromosome clones of Arabidopsis thaliana DNA.
     Agyare, F.D., Lashkari, D.A., Lagos, A., Namath, A.F., Lagos, G., Davis, R.W. & Lemieux, B. Genome Res 7, 1-9 (1997). [PubMed]
313. The nucleotide sequence of Saccharomyces cerevisiae chromosome V.
     Dietrich, F.S., Mulligan, J., Hennessy, K., Yelton, M.A., Allen, E., Araujo, R., Aviles, E., Berno, A., Brennan, T., Carpenter, J., Chen, E., Cherry, J.M., Chung, E., Duncan, M., Guzman, E., Hartzell, G., Hunicke-Smith, S., Hyman, R.W., Kayser, A., Komp, C., Lashkari, D., Lew, H., Lin, D., Mosedale, D., Nakahara, K., Namath, A., Norgren, R. Oefner, P., Oh, C., Petel, F.X., Roberts, D., Sehl, P., Schramm, S., Shogren, T., Smith, V., Taylor, P., Wei, Y., Botstein, D., Davis, R.W. Nature 387, 78-81 (1997). [PubMed]
314. Automation for the Arabidopsis genome sequencing project.
     Marziali, A., Federspiel, N., and Davis, R.W. Trends in Plant Science 2, 71-74 (1997).
315. Escherichia coli chromosome minutes 9-11. Genbank: accession number U82664.
     Roberts, D., Allen, E., Araujo, R., Aparicio, A., Chung, E., Davis, K., Duncan, M., Federspiel, N., Hyman, R. W., Kalman, S., Komp, C., Kurdi, O., Lew, H., Lin, D., Namath, A., Oefner, P., Schramm, S., Davis, R.W. (1997).
316. Escherichia coli chromosome minutes 9-12. Genbank: accession number U82598.
     Chung, E., Allen, E., Araujo,R., Aparicio, A., Davis, K., Duncan, M., Federspiel, N., Hyman, R.W., Kalman, S., Komp, C., Kurdi, O., Lew, H., Lin, D., Namath, A., Oefner, P., Schramm, S., Davis, R.W. (1997).
317. The nucleotide sequence of chromosome IV.
     Jacq, C., Davis, R.W., et al. (144 co-authors). Nature 387 suppl, 75-78 (1997).
318. Human chromosome Y cosmid 30H9 genomic sequence. GenBank: accession number AC003031.
     Shen, P., Chung, E., Hyman, R.W., Roberts, D., Schramm, S., Vollrath, D., Davis, R.W. (1997).
319. Human chromosome Y cosmid 7A1 genomic sequence. GenBank: accession number AC003032.
     Thorstenson, Y., Au, M., Chung, E., Hyman, R., Schramm, S., Vollrath, D., Davis, R.W. (1997).
320. Human chromosome Y cosmid 16E4 genomic sequence. GenBank: accession number AC003094.
     Hyman, R.W., Chung, E., Kurdi, O., Roberts, D., Schramm, S., Vollrath, D., Davis, R.W. (1997).
321. Human chromosome Y cosmid 54E8 genomic sequence. GenBank: accession number AC003095.
     Hyman, R.W., Vollrath, D., Davis, R.W. (1997).
322. Human chromosome Y cosmid 56B5 genomic sequence. GenBank: accession number AC003097.
     Lin, D., Chung, E., Hyman, R.W., Schramm, S., Vollrath, D., Davis, R.W. (1997).
323. Human chromosome 1 BAC 13512 genomic sequence. GenBank: accession number AC003115.
     Hyman, R.W., Babb, V., Chung, E., Kurdi, O., Rexan, M., Vollrath, D., Davis, R.W. (1997).
324. Human chromosome 1 BAC 308G1 genomic sequence. GenBank: accession number AC003117.
     Fan, J., Babb, V., Hyman, R.W., Kalman, S., Kurdi, O., Marathe, R., Rexan, M., Vollrath, D., Davis, R.W. (1997).
325. Human chromosome 1 BAC 89N6 genomic sequence. GenBank: accession number AC003118.
     Chung, E., Babb, V., Hyman, R.W., Kurdi, O., Rexan, M., Vollrath, D., Davis, Ronald W. (1997).
326. Autosomal DNA haplotypes distinguish ancient human migrations.
     Jin, L., Underhill, P.A., Doctor, V., Cavalli-Sforza, L.L., Davis, R., Oefner, P.J. Am. J. Hum. Genet 61 [Suppl.], A201 (1997).
327. An African origin of human Y chromosomes.
     Underhill, P.A., Jin, L., Lin, A., Chan, C., Shen, P., Kauffman, E., Choi, L., Hurlbut, A., Cavalli-Sforza, L.L., Mehdi, S.Q., Jenkins, T., Seielstad, M.T., Wells, R.S., Ibrahim, M., Vollrath, D., Hyman, R., Davis, R., Oefner, P.J. Am. J. Hum. Genet 61 [Suppl.], A18 (1997)
328. CDP1, a novel Saccharomyces cerevisiae gene required for proper nuclear division and chromosome segregation.
     Foreman, P.K. & Davis, R.W. Genetics 144, 1387-97 (1996). [PubMed]
329. Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy.
     Shoemaker, D.D., Lashkari, D.A., Morris, D., Mittmann, M. & Davis, R.W. Nat Genet 14, 450-6 (1996). [PubMed]
330. Life with 6000 genes.
     Goffeau, A., Barrell, B.G., Bussey, H., Davis, R.W., Dujon, B., Feldmann, H., Galibert, F., Hoheisel, J.D., Jacq, C., Johnston, M., Louis, E.J., Mewes, H.W., Murakami, Y., Philippsen, P., Tettelin, H. & Oliver, S.G. Science 274, 546, 563-7 (1996). [PubMed]
331. Efficient random subcloning of DNA sheared in a recirculating point-sink flow system.
     Oefner, P.J., Hunicke-Smith, S.P., Chiang, L., Dietrich, F., Mulligan, J. & Davis, R.W. Nucleic Acids Res 24, 3879-86 (1996). [PubMed]
332. Parallel human genome analysis: microarray-based expression monitoring of 1000 genes.
     Schena, M., Shalon, D., Heller, R., Chai, A., Brown, P.O. & Davis, R.W. Proc Natl Acad Sci U S A 93, 10614-9 (1996). [PubMed]
333. Application of DNA typing methods and genetic analysis to epidemiology and taxonomy of Saccharomyces.
     Clemons, K.V., Park, P.S., McCusker, J.H., Davis, R.W., Stevens, D.A. J. Infec. Dis (1996).
334. After period of gestation, DNA chips coming of age.
     O’Connell, J.P., Davis, Ronald W., Chee, M., Lockhart, D.J., Fodor, S.P., Collins, F. Chem. & Eng. News (1996).
335. Yeast Artificial Chromosome (YAC) construction and applications.
     Loehrlein, C., Davis, Ronald W. in Encyclopedia of Molecular Biology and Molecular Medicine, Vol. 6 (ed. Meyers, R.A.) 291-302 (VCH Publishers, Weinheim, 1996).
336. Saccharomyces cerevisiae chromosome XVI left arm from MMN to PH085. Genbank: accession number U44030.
     Dietrich, F.S., Allen, E., Araujo, R., Aparicio, A., Carpenter, J., Cherry, J.M., Chung, E., E., Davis, K., Duncan, M., Hunicke-Smith, S., Hyman, R.W., Kalman, S., Komp, C., Kurdi, O., Lashkari, D., Lew, H., Lin, A., Lin, D., Marathe, R., Mirtipati, S., Namath, A., Oefner, P., Petel, F., Roberts, D., Schramm, S., Schroeder, M., Botstein, D., Davis, Ronald W. (1996).
337. Escherichia coli chromosome minutes 4-6. Genbank: accession number U70214.
     Schramm, S., Duncan, M., Allen, E., Araujo, R., Aparicio, A., Chung, E., Davis, K., Federspiel, N., Hyman, R.W., Kalman, S., Komp, C., Kurdi, O., Lashkari, D., Lew, H., Lin, D., Namath, A., Oefner, P., Roberts, D., Davis, Ronald W. (1996).
338. Escherichia coli chromosome minutes 6-8. Genbank: accession number U73857.
     Duncan, M., Allen, E., Araujo, R., Aparicio, A., Chung, E., Davis, K., Federspiel, N., Hyman, R.W., Kalman, S., Komp, C., Kurdi, O., Lew, H., Lin, D., Namath, A., Oefner, P., Roberts, D., Schramm, S., Davis, Ronald W. (1996).
339. Amassing a wealth of Y chromosome polymorphisms for evolutionary studies.
     Underhill, P.A., Jin, L., Cavalli-Sforza, L.L., Davis, R., Oefner, P.J. Am. J. Hum. Genet 59 [Suppl.], A30 (1996).
340. Sequencing the Chlamydia trachomatis Genome.
     Kalman, S.S., Araujo, R., Chung, E., Dietrich, F., Komp, C., Otto, G., Lew, H., Lin, D., Marathe, R., Mirthipati, S., Namath, A., Oefner, P., Davis, R.W., Stephens, R. Microbial & Comparative Genomics 1, 236 (1996).
341. Mapping and Sequencing of the Arabidopsis Genome.
     Dewar, K., Dunn, P.J., Li, Y.-P., Kim, C.J., Ecker, J.R., Federspiel, N.A., Dietrich, F., Marziali, A., Oefner, P., Norgren, R., Davis, R.W., Vysotskaia, V., Yu, Q., Theologis, A. Microbial & Comparative Genomics 1, 204 (1996).
342. High-Throughput Differential Genome Analysis by Denaturing HPLC.
     Oefner, P.J., Underhill, P.A., Grill, E.A., Cho, R.J., Jin, L., Cavalli-Sforza, L.L., Davis, R.W. Microbial & Comparative Genomics 1, 245 (1996).
343. Electrophoresis using contour-clamped electric fields.
     Chu, G., Vollrath, D., Davis, R. (The Board of Trustees of the Leland Stanford Junior University, USA, 1996).
344. Quantitative monitoring of gene expression patterns with a complementary DNA microarray.
     Schena, M., Shalon, D., Davis, R.W. & Brown, P.O. Science 270, 467-70 (1995). [PubMed]
345. An automated multiplex oligonucleotide synthesizer: development of high-throughput, low-cost DNA synthesis.
     Lashkari, D.A., Hunicke-Smith, S.P., Norgren, R.M., Davis, R.W. & Brennan, T. Proc Natl Acad Sci U S A 92, 7912-5 (1995). [PubMed]
346. Sliding-plate gel caster.
     Lashkari, D.A., Norgren, R.M. & Davis, R.W. Biotechniques 18, 625-6 (1995). [no abstract available]
347. Pathogenicity of Saccharomyces cerevisiae in complement factor five-deficient mice.
     Byron, J.K., Clemons, K.V., McCusker, J.H., Davis, R.W. & Stevens, D.A. Infect Immun 63, 478-85 (1995). [PubMed]
348. The sequence of Saccharomyces cerevisiae chromosome IV right. Genbank: accession numbers U33057, U33050, U33007, U32274, and U43834.
     Dietrich, F.S., Mulligan, J., Hennesy, K., Allen, E., Araujo, R., Aviles, E., Berno, A., Brennan, T., Carpenter, J., Chen, E., Cherry, J.M., Chung, E., Duncan, M., Guzman, E., Hartzell, G., Hunicke-Smith, S., Hyman, R.W., Kayser, A., Komp, C., Lashkari, D., Lew, H., Lin, D., Mosedale, D., Nakahara, K., Namath, A., Norgren, R., Oefner, P., Oh, C., Petel, F., Roberts, D., Sehl, P., Schramm, S., Shogren, T., Smith, V., Taylor, P., Wei, Y., Yelton, M., Botstein, D., Davis, Ronald W. (1995).
349. Saccharomyces cerevisiae virulence phenotype as determined with CD-1 mice is associated with the ability to grow at 42 degrees C and form pseudohyphae.
     McCusker, J.H., Clemons, K.V., Stevens, D.A. & Davis, R.W. Infect Immun 62, 5447-55 (1994). [PubMed]
350. The TTG gene is required to specify epidermal cell fate and cell patterning in the Arabidopsis root.
     Galway, M.E., Masucci, J.D., Lloyd, A.M., Walbot, V., Davis, R.W. & Schiefelbein, J.W. Dev Biol 166, 740-54 (1994). [PubMed]
351. Epidermal cell fate determination in Arabidopsis: patterns defined by a steroid-inducible regulator
     Lloyd, A.M., Schena, M., Walbot, V. & Davis, R.W. . Science 266, 436-9 (1994). [PubMed]
352. Structure of homeobox-leucine zipper genes suggests a model for the evolution of gene families.
     Schena, M. & Davis, R.W. Proc Natl Acad Sci U S A 91, 8393-7 (1994). [PubMed]
353. Cloning vectors for the synthesis of epitope-tagged, truncated and chimeric proteins in Saccharomyces cerevisiae.
     Foreman, P.K. & Davis, R.W. Gene 144, 63-8 (1994). [PubMed]
354. Tetrad analysis possible in Arabidopsis with mutation of the QUARTET (QRT) genes.
     Preuss, D., Rhee, S.Y. & Davis, R.W. Science 264, 1458-60 (1994). [PubMed]
355. Genetic characterization of pathogenic Saccharomyces cerevisiae isolates.
     McCusker, J.H., Clemons, K.V., Stevens, D.A. & Davis, R.W. Genetics 136, 1261-9 (1994). [PubMed]
356. Functional expression of the yeast FLP/FRT site-specific recombination system in Nicotiana tabacum.
     Lloyd, A.M. & Davis, R.W. Mol Gen Genet 242, 653-7 (1994). [PubMed]
357. Comparative pathogenesis of clinical and nonclinical isolates of Saccharomyces cerevisiae.
     Clemons KV, McCusker JH, Davis RW, Stevens DA. J Infect Dis. 1994 Apr;169(4):859-67. [PubMed]
358. The complete sequence of Saccharomyces cerevisiae chromosome V. Genbank, : accession numbers U18795, U18779, U18530, U18778, U18796, U18813, U18814, U18839, U18916, U18917, and U18922.
     Dietrich, F.S., Mulligan, J., Hennesy, K., Allen, E., Araujo, R., Aviles, E., Berno, A., Brennan, T., Carpenter, J., Chen, E., Cherry, J.M., Chung, E., Duncan, M., Guzman, E., Hartzell, G., Hunicke-Smith, S., Hyman, R.W., Kayser, A., Komp, C., Lashkari, D., Lew, H., Lin, D., Mosedale, D., Nakahara, K., Namath, A., Norgren, R., Oefner, P., Oh, C., Petel, F., Roberts, D., Sehl, P., Schramm, S., Shogren, T., Smith, V., Taylor, P., Wei, Y., Yelton, M., Botstein, D., Davis, Ronald W. (1994)
359. Point mutations that separate the role of Saccharomyces cerevisiae centromere binding factor 1 in chromosome segregation from its role in transcriptional activation.
     Foreman, P.K. & Davis, R.W. Genetics 135, 287-96 (1993). [PubMed]
360. A conditional sterile mutation eliminates surface components from Arabidopsis pollen and disrupts cell signaling during fertilization.
     Preuss, D., Lemieux, B., Yen, G. & Davis, R.W. Genes Dev 7, 974-85 (1993). [PubMed]
361. The HAT4 gene of Arabidopsis encodes a developmental regulator.
     Schena, M., Lloyd, A.M. & Davis, R.W. Genes Dev 7, 367-79 (1993). [PubMed]
362. A dominant truncation allele identifies a gene, STE20, that encodes a putative protein kinase necessary for mating in Saccharomyces cerevisiae.
     Ramer, S.W. & Davis, R.W. Proc Natl Acad Sci U S A 90, 452-6 (1993). [PubMed]
363. Arabidopsis and Nicotiana anthocyanin production activated by maize regulators R and C1.
     Lloyd, A.M., Walbot, V. & Davis, R.W. Science 258, 1773-5 (1992). [PubMed]
364. Dominant genetics using a yeast genomic library under the control of a strong inducible promoter.
     Ramer, S.W., Elledge, S.J. & Davis, R.W. Proc Natl Acad Sci U S A 89, 11589-93 (1992). [PubMed]
365. ATP hydrolysis and the displaced strand are two factors that determine the polarity of RecA-promoted DNA strand exchange.
     Konforti, B.B. & Davis, R.W. J Mol Biol 227, 38-53 (1992). [PubMed]
366. HD-Zip proteins: members of an Arabidopsis homeodomain protein superfamily.
     Schena, M. & Davis, R.W. Proc Natl Acad Sci U S A 89, 3894-8 (1992). [PubMed]
367. Functional genetic expression of eukaryotic DNA in Escherichia coli. 1976.
     Struhl, K., Cameron, J.R. & Davis, R.W. Biotechnology 24, 353-7 (1992). [no abstract available]
368. Electophoresis using contour-clamped electric fields.
     Chu, G., Vollrath, D., Davis, R. (The Board of Trustees of the Leland Stanford Junior University, USA, 1992)
369. A steroid-inducible gene expression system for plant cells.
     Schena, M., Lloyd, A.M. & Davis, R.W. Proc Natl Acad Sci U S A 88, 10421-5 (1991). [PubMed]
370. The use of proline as a nitrogen source causes hypersensitivity to, and allows more economical use of 5FOA in Saccharomyces cerevisiae.
     McCusker, J.H. & Davis, R.W. Yeast 7, 607-8 (1991). [PubMed]
371. Polymerase chain reaction mapping of yeast GAL7 mRNA polyadenylation sites demonstrates that 3' end processing in vitro faithfully reproduces the 3' ends observed in vivo.
     Sadhale, P.P., Sapolsky, R., Davis, R.W., Butler, J.S. & Platt, T. Nucleic Acids Res 19, 3683-8 (1991). [PubMed]
372. DNA substrate requirements for stable joint molecule formation by the RecA and single-stranded DNA-binding proteins of Escherichia coli.
     Konforti, B.B. & Davis, R.W. J Biol Chem 266, 10112-21 (1991). [PubMed]
373. The Saccharomyces cerevisiae RPB4 gene is tightly linked to the TIF2 gene.
     Foreman, P.K., Davis, R.W. & Sachs, A.B. Nucleic Acids Res 19, 2781 (1991). [PubMed]
374. Lambda YES: a multifunctional cDNA expression vector for the isolation of genes by complementation of yeast and Escherichia coli mutations.
     Elledge, S.J., Mulligan, J.T., Ramer, S.W., Spottswood, M. & Davis, R.W. Proc Natl Acad Sci U S A 88, 1731-5 (1991). [PubMed]
375. Gene isolation with lambda gt11 system.
     Young, R.A. & Davis, R.W. Methods Enzymol 194, 230-8 (1991). [no abstract available]
376. Yeast centromere binding protein CBF1, of the helix-loop-helix protein family, is required for chromosome stability and methionine prototrophy.
     Cai, M. & Davis, R.W. Cell 61, 437-46 (1990). [PubMed]
377. Two genes differentially regulated in the cell cycle and by DNA-damaging agents encode alternative regulatory subunits of ribonucleotide reductase.
     Elledge, S.J. & Davis, R.W. Genes Dev 4, 740-51 (1990). [PubMed]
378. The preference for a 3' homologous end is intrinsic to RecA-promoted strand exchange.
     Konforti, B.B. & Davis, R.W. J Biol Chem 265, 6916-20 (1990). [PubMed]
379. Translation initiation and ribosomal biogenesis: involvement of a putative rRNA helicase and RPL46.
     Sachs, A.B. & Davis, R.W. Science 247, 1077-9 (1990). [PubMed]
380. Rain-, wind-, and touch-induced expression of calmodulin and calmodulin-related genes in Arabidopsis.
     Braam, J. & Davis, R.W. Cell 60, 357-64 (1990). [PubMed]
381. Gene targeting at the human CD4 locus by epitope addition.
     Jasin, M., Elledge, S.J., Davis, R.W. & Berg, P. Gene targeting at the human CD4 locus by epitope addition. Genes Dev 4, 157-66 (1990). [PubMed]
382. Identification of the DNA damage-responsive element of RNR2 and evidence that four distinct cellular factors bind it.
     Elledge, S.J. & Davis, R.W. Mol Cell Biol 9, 5373-86 (1989). [PubMed]
383. DNA damage induction of ribonucleotide reductase.
     Elledge, S.J. & Davis, R.W. Mol Cell Biol 9, 4932-40 (1989). [PubMed]
384. The poly(A) binding protein is required for poly(A) shortening and 60S ribosomal subunit-dependent translation initiation.
     Sachs, A.B. & Davis, R.W. Cell 58, 857-67 (1989). [PubMed]
385. Rapid screening of a human genomic library in yeast artificial chromosomes for single-copy sequences.
     Traver, C.N., Klapholz, S., Hyman, R.W. & Davis, R.W. Proc Natl Acad Sci U S A 86, 5898-902 (1989). [PubMed]
386. Purification of a yeast centromere-binding protein that is able to distinguish single base-pair mutations in its recognition site.
     Cai, M.J. & Davis, R.W. Mol Cell Biol 9, 2544-50 (1989). [PubMed]
387. Genetic selection for genes encoding sequence-specific DNA-binding proteins.
     Elledge, S.J., Sugiono, P., Guarente, L. & Davis, R.W. Proc Natl Acad Sci U S A 86, 3689-93 (1989). [PubMed]
388. Position and density effects on repression by stationary and mobile DNA-binding proteins.
     Elledge, S.J. & Davis, R.W. Genes Dev 3, 185-97 (1989). [PubMed]
389. Strategies for genetic modification of parasites.
     Davis, R.W. Ann N Y Acad Sci 569, 104-17 (1989). [no abstract available]
390. Molecular Analysis of Nitrate Regulation of Nitrate Reductase in Squash and Arabidopsis.
     Crawford, N.M., Davis, R.W. in Molecular and Genetic Aspects of Nitrate Assimilation (ed. Wray, J.L., Kinghorn, James R.) (Oxford Science Publications, 1989
391. A family of versatile centromeric vectors designed for use in the sectoring-shuffle mutagenesis assay in Saccharomyces cerevisiae.
     Elledge, S.J. & Davis, R.W. Gene 70, 303-12 (1988). [PubMed]
392. Direction of chromosome rearrangements in Saccharomyces cerevisiae by use of his3 recombinational substrates.
     Fasullo, M.T. & Davis, R.W. Mol Cell Biol 8, 4370-80 (1988). [PubMed]
393. SPA1: a gene important for chromosome segregation and other mitotic functions in S. cerevisiae.
     Snyder, M. & Davis, R.W. Cell 54, 743-54 (1988). [PubMed]
394. Physical mapping of large DNA by chromosome fragmentation.
     Vollrath, D., Davis, R.W., Connelly, C. & Hieter, P. Proc Natl Acad Sci U S A 85, 6027-31 (1988). [PubMed]
395. Sequence and nitrate regulation of the Arabidopsis thaliana mRNA encoding nitrate reductase, a metalloflavoprotein with three functional domains.
     Crawford, N.M., Smith, M., Bellissimo, D. & Davis, R.W. Proc Natl Acad Sci U S A 85, 5006-10 (1988). [PubMed]
396. Tandem array of human visual pigment genes at Xq28.
     Vollrath, D., Nathans, J. & Davis, R.W. Science 240, 1669-72 (1988). [PubMed]
397. Transcription interferes with elements important for chromosome maintenance in Saccharomyces cerevisiae.
     Snyder, M., Sapolsky, R.J. & Davis, R.W. Mol Cell Biol 8, 2184-94 (1988). [PubMed]
398. An electrophoretic karyotype of Neurospora crassa.
     Orbach, M.J., Vollrath, D., Davis, R.W. & Yanofsky, C. Mol Cell Biol 8, 1469-73 (1988). [PubMed]
399. Defining Sequences that Protect Elements Important for Chromosome Maintenance from Transcriptional Interference in Saccharomyces Cerevisiae.
     Snyder, M., Sapolsky, R.J., Davis, R.W. Mol. And Cell. Biol 8, 2184-2194 (1988).
400. Genomic Organization of Two Families of Highly Repeated Nuclear DNA Sequences of Maize Selected Autonomous Replicating Activity in Yeast.
     Berlani, R., Davis, R.W., Walbot, V. Plant Mol. Biol 11(1988).
401. Sequence Analysis of Three Fragments of Maize Nuclear DNA which Replicate Autonomously in Yeast.
     Berlani, R.E., Walbot, V., Davis, R.W. Plant Mol. Biol 11(1988).
402. Plant Nitrate Reductase is a Tripartite Electron Transfer Protein That Belongs to the Cytochrome b5 Superfamily of Enzymes.
     Crawford, N.M., Davis, R.W. Current Topics in Plant Biochemistry and Physiology 7, 16-25 (1988).
403. Resolution of DNA molecules greater than 5 megabases by contour-clamped homogeneous electric fields.
     Vollrath, D. & Davis, R.W. Nucleic Acids Res 15, 7865-76 (1987). [PubMed]
404. A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA binding and cell viability.
     Sachs, A.B., Davis, R.W. & Kornberg, R.D. Mol Cell Biol 7, 3268-76 (1987). [PubMed]
405. Recombinational substrates designed to study recombination between unique and repetitive sequences in vivo.
     Fasullo, M.T. & Davis, R.W. Proc Natl Acad Sci U S A 84, 6215-9 (1987). [PubMed]
406. 3' homologous free ends are required for stable joint molecule formation by the RecA and single-stranded binding proteins of Escherichia coli.
     Konforti, B.B. & Davis, R.W. Proc Natl Acad Sci U S A 84, 690-4 (1987). [PubMed]
407. Lambda gt 11: gene isolation with antibody probes and other applications.
     Snyder, M., Elledge, S., Sweetser, D., Young, R.A. & Davis, R.W. Methods Enzymol 154, 107-28 (1987). [no abstract available]
408. Identification and isolation of the gene encoding the small subunit of ribonucleotide reductase from Saccharomyces cerevisiae: DNA damage-inducible gene required for mitotic viability.
     Elledge, S.J. & Davis, R.W. Mol Cell Biol 7, 2783-93 (1987). [PubMed]
409. Genome Plasticity in Saccharomyces Cerevisiae.
     Davis, R.W., Vollrath, D., Thomas, M., Hieter, P., Snyder, M., Mann, C., Fasullo, M. in Molecular Strategies of Parasitic Invasion 17-27 (Alan R. Liss, Inc, 1987).
410. Plant Defense Genes are Regulated by Ethylene.
     Ecker, J.R., Davis, R.W. Proc. Natl. Acad. Sci 84, 5202-5206 (1987). [PubMed]
411. Separation of large DNA molecules by contour-clamped homogeneous electric fields.
     Chu, G., Vollrath, D. & Davis, R.W. Science 234, 1582-5 (1986). [PubMed]
412. Bent DNA at a yeast autonomously replicating sequence.
     Snyder, M., Buchman, A.R. & Davis, R.W. Nature 324, 87-9 (1986). [PubMed]
413. Meiotic disjunction of circular minichromosomes in yeast does not require DNA homology.
     Mann, C. & Davis, R.W. Proc Natl Acad Sci U S A 83, 6017-9 (1986). [PubMed]
414. Rapid mapping of antigenic coding regions and constructing insertion mutations in yeast genes by mini-Tn10 "transplason" mutagenesis.
     Snyder, M., Elledge, S. & Davis, R.W. Proc Natl Acad Sci U S A 83, 730-4 (1986). [PubMed]
415. Structure and sequence of the centromeric DNA of chromosome 4 in Saccharomyces cerevisiae.
     Mann, C. & Davis, R.W. Mol Cell Biol 6, 241-5 (1986). [PubMed]
416. Inhibition of Gene Expression in Plant Cells by Expression of Anti-Sense RNA.
     Ecker, J.R., Davis, R.W.Proc. Natl. Acad. Sci 83, 5372-5376 (1986). [PubMed]
417. Nitrate Reductase from Squash: cDNA Cloning and Nitrate Regulation.
     Crawford, N., Campbell, W.H., Davis, R.W. Proc. Natl. Acad. Sci. 83, 8073-8076 (1986). [PubMed]
418. In Vitro and In Vivo Manipulation of Very Large DNA Molecules.
     Davis, R.W., Vollrath, D., Chu, G., Fasullo, M., Hieter, P., Thomas, M. In DNA Probes Applications in Genetic and Infectious Disease and Cancer. (Cold Spring Harbor Laboratory, 1986
419. Isolation of the gene encoding yeast DNA polymerase I.
     Johnson, L.M., Snyder, M., Chang, L.M., Davis, R.W. & Campbell, J.L. Cell 43, 369-77 (1985). [PubMed]
420. Functional selection and analysis of yeast centromeric DNA.
     Hieter, P., Pridmore, D., Hegemann, J.H., Thomas, M., Davis, R.W. & Philippsen, P. Cell 42, 913-21 (1985). [PubMed]
421. Genes for the major protein antigens of the leprosy parasite Mycobacterium leprae.
     Young, R.A., Mehra, V., Sweetser, D., Buchanan, T., Clark-Curtiss, J., Davis, R.W. & Bloom, B.R. Nature 316, 450-2 (1985). [PubMed]
422. Rapid induction of specific mRNAs by auxin in pea epicotyl tissue.
     Theologis, A., Huynh, T.V. & Davis, R.W. J Mol Biol 183, 53-68 (1985). [PubMed]
423. Dissection of Mycobacterium tuberculosis antigens using recombinant DNA.
     Young, R.A., Bloom, B.R., Grosskinsky, C.M., Ivanyi, J., Thomas, D. & Davis, R.W. Proc Natl Acad Sci U S A 82, 2583-7 (1985). [PubMed]
424. Mitotic stability of yeast chromosomes: a colony color assay that measures nondisjunction and chromosome loss.
     Hieter, P., Mann, C., Snyder, M. & Davis, R.W. Cell 40, 381-92 (1985). [PubMed]
425. Construction and Screening cDNA Libraries in lgt10 and lgt11.
     Huynh, T., Young, R.A., Davis, R.W. (D. Glover, ed.), , Vol. 1, p. 49-78 (1985). in DNA Cloning Techniques: A Practical Approach, Vol. 1 (ed. Glover, D.) 49-78 (IRL Press, Oxford, 1985).
426. Screening lgt11 expression libraries with antibody probes.
     Synder, M., Davis, R.W. in Hybridomas in the Biosciences and Medicine (ed. Springer, T.) 397-406 (Plenum Press, N.Y., 1985).
427. Immunoscreening lgt11 recombinant DNA expression libraries.
     Young, R.A., Davis, R.W. in Genetic Engineering: Principles and Techniques, Vol. 7 (ed. Setlow, J., Hollaender A.) 29-41 (Plenum Press, N.Y., 1985)
428. Deletion of plasmid sequences during Saccharomyces cerevisiae transformation.
     Clancy, S., Mann, C., Davis, R.W. & Calos, M.P. J Bacteriol 159, 1065-7 (1984). [PubMed]
429. Sequences that regulate the divergent GAL1-GAL10 promoter in Saccharomyces cerevisiae.
     Johnston, M. & Davis, R.W. Mol Cell Biol 4, 1440-8 (1984). [PubMed]
430. Dissection Pathogen Antigens using Recombinant DNA.
     Young, R.A., Davis, R.W. in New Approaches to Vaccine Development 74-79 (Schwabe & Co., AG, Basel, 1984).
431. New Methods for Molecular DNA Cloning and Chromosome Manipulation.
     Davis, R.W., Young, R.A., Fasullo, M. Prontificia Academia Scientiarum 51, 123-134 (1984).
432. Yeast RNA polymerase II genes: isolation with antibody probes.
     Young, R.A. & Davis, R.W. Science 222, 778-82 (1983). [PubMed]
433. Targeted selection of recombinant clones through gene dosage effects.
     Rine, J., Hansen, W., Hardeman, E. & Davis, R.W. Proc Natl Acad Sci U S A 80, 6750-4 (1983). [PubMed]
434. RNA from the yeast transposable element Ty1 has both ends in the direct repeats, a structure similar to retrovirus RNA.
     Elder, R.T., Loh, E.Y. & Davis, R.W.Proc Natl Acad Sci U S A 80, 2432-6 (1983). [PubMed]
435. Efficient isolation of genes by using antibody probes.
     Young, R.A. & Davis, R.W. Proc Natl Acad Sci U S A 80, 1194-8 (1983). [PubMed]
436. Instability of dicentric plasmids in yeast.
     Mann, C. & Davis, R.W. Proc Natl Acad Sci U S A 80, 228-32 (1983). [PubMed]
437. Reversion of a promoter deletion in yeast.
     Scherer, S., Mann, C. & Davis, R.W. Nature 298, 815-9 (1982). [PubMed]
438. Centromeric DNA from Saccharomyces cerevisiae.
     Stinchcomb, D.T., Mann, C. & Davis, R.W. J Mol Biol 158, 157-90 (1982). [PubMed]
439. Zein storage protein gene family of maize. An assessment of heterogeneity with cloned messenger RNA sequences.
     Burr, B., Burr, F.A., St John, T.P., Thomas, M. & Davis, R.W.J Mol Biol 154, 33-49 (1982). [no abstract available]
440. Principles and Practice of Recombinant DNA Research with Yeast.
     Botstein, D., Davis, R.W. in The Molecular Biology of the Yeast Saccharomyces, Metabolism and Gene Expression. (Cold Spring Harbor Laboratory, 1982).
441. Recombinant DNA Techniques in Yeast.
     Davis, R.W., Johnston, H.M. in Proceedings of the IVth International Symposium on Genetics of Industrial Microorganisms 153-158 (1982).
442. Position effects in Saccharomyces cerevisiae.
     Struhl, K. & Davis, R.W. J Mol Biol 152, 569-75 (1981). [no abstract available]
443. Promotor mutants of the yeast his3 gene.
     Struhl, K. & Davis, R.W. J Mol Biol 152, 553-68 (1981). [no abstract available]
444. Transcription of the his3 gene region in Saccharomyces cerevisiae.
     Struhl, K. & Davis, R.W. J Mol Biol 152, 535-52 (1981). [no abstract available]
445. Deletion analysis of the Saccharomyces GAL gene cluster. Transcription from three promoters.
     St John, T.P., Scherer, S., McDonell, M.W. & Davis, R.W. J Mol Biol 152, 317-34 (1981). [no abstract available]
446. The organization and transcription of the galactose gene cluster of Saccharomyces.
     St John, T.P. & Davis, R.W. J Mol Biol 152, 285-315 (1981). [no abstract available]
447. Studies on the transposable element Ty1 of yeast. I. RNA homologous to Ty1. II. Recombination and expression of Ty1 and adjacent sequences.
     Elder, R.T., St John, T.P., Stinchcomb, D.T., Davis, R.W. & Scherer, S. Cold Spring Harb Symp Quant Biol 45 Pt 2, 581-91 (1981). [no abstract available]
448. Recombination of dispersed repeated DNA sequences in yeast.
     Scherer, S. & Davis, R.W. Science 209, 1380-4 (1980). [PubMed]
449. Conservation and DNA sequence arrangement of the DNA polymerase I gene region from Klebsiella aerogenes, Klebsiella pneumoniae and Escherichia coli.
     Struhl, K. & Davis, R.W. J Mol Biol 141, 343-68 (1980). [no abstract available]
450. Eukaryotic DNA segments capable of autonomous replication in yeast.
     Stinchcomb, D.T., Thomas, M., Kelly, J., Selker, E. & Davis, R.W. Proc Natl Acad Sci U S A 77, 4559-63 (1980). [PubMed]
451. Construction of a genetic linkage map in man using restriction fragment length polymorphisms.
     Botstein, D., White, R.L., Skolnick, M. & Davis, R.W. Am J Hum Genet 32, 314-31 (1980). [PubMed]
452. A physiological study of functional expression in Escherichia coli of the cloned yeast imidazoleglycerolphosphate dehydratase gene.
     Struhl, K., Stinchcomb, D.T. & Davis, R.W. J Mol Biol 136, 291-307 (1980). [no abstract available]
453. A physical, genetic and transcriptional map of the cloned his3 gene region of Saccharomyces cerevisiae.
     Struhl, K. & Davis, R.W. J Mol Biol 136, 309-32 (1980). [no abstract available]
454. Rapid DNA isolations for enzymatic and hybridization analysis.
     Davis, R.W., Thomas, M., Cameron, J., St John, T.P., Scherer, S. & Padgett, R.A. Methods Enzymol 65, 404-11 (1980). [no abstract available]
455. Isolation of galactose-inducible DNA sequences from Saccharomyces cerevisiae by differential plaque filter hybridization.
     St. John, T.P. & Davis, R.W. Cell 16, 443-52 (1979). [PubMed]
456. Sterile host yeasts (SHY): a eukaryotic system of biological containment for recombinant DNA experiments.
     Botstein, D., Falco, S.C., Stewart, S.E., Brennan, M., Scherer, S., Stinchcomb, D.T., Struhl, K. & Davis, R.W. Gene 8, 17-24 (1979). [PubMed]
457. Isolation and characterisation of a yeast chromosomal replicator.
     Stinchcomb, D.T., Struhl, K. & Davis, R.W. Nature 282, 39-43 (1979). [PubMed]
458. Replacement of chromosome segments with altered DNA sequences constructed in vitro.
     Scherer, S. & Davis, R.W. Proc Natl Acad Sci U S A 76, 4951-5 (1979). [PubMed]
459. Suppression of a yeast amber mutation in Escherichia coli.
     Struhl, K., Davis, R.W. & Fink, G.R. Nature 279, 78-9 (1979). [no abstract available]
460. Evidence for transposition of dispersed repetitive DNA families in yeast.
     Cameron, J.R., Loh, E.Y. & Davis, R.W. Cell 16, 739-51 (1979). [PubMed]
461. High-frequency transformation of yeast: autonomous replication of hybrid DNA molecules.
     Struhl, K., Stinchcomb, D.T., Scherer, S. & Davis, R.W. Proc Natl Acad Sci U S A 76, 1035-9 (1979). [PubMed]
462. Isolation of galactose-inducible DNA sequences from Saccharomyces cerevisiae by differential plaque filter hybridization.
     St John, T.P. & Davis, R.W. Cell 16, 443-52 (1979). [PubMed]
463. Cloning of the yeast tyrosine transfer RNA genes in bacteriophage lambda.
     Olson, M.V., Hall, B.D., Cameron, J.R. & Davis, R.W. J Mol Biol 127, 285-95 (1979). [no abstract available]
464. Structural and Functional Analysis of the His3 Gene and Galactose Inducible Sequences in Yeast.
     Davis, R.W., St. John, T., Struhl, K., Stinchcomb, D., Scherer, S., McDonell, M. In Eukaryotic Gene Regulation 51-55 (Academic Press, Inc, N.Y., 1979).
465. Unique arrangement of coding sequences for 5 S, 5.8 S, 18 S and 25 S ribosomal RNA in Saccharomyces cerevisiae as determined by R-loop and hybridization analysis.
     Philippsen, P., Thomas, M., Kramer, R.A. & Davis, R.W. J Mol Biol 123, 387-404 (1978). [no abstract available]
466. Cloning of the yeast ribosomal DNA repeat unit in SstI and HindIII lambda vectors using genetic and physical size selections.
     Philippsen, P., Kramer, R.A. & Davis, R.W. J Mol Biol 123, 371-86 (1978). [no abstract available]
467. Divergent transcription in the yeast ribosomal RNA coding region as shown by hybridization to separated strands and sequence analysis of cloned DNA.
     Kramer, R.A., Philippsen, P. & Davis, R.W.J Mol Biol 123, 405-16 (1978). [no abstract available]
468. A new electron microscopic technique for establishing the positions of genes: an analysis of the yeast ribosomal RNA coding region.
     Ferguson, J. & Davis, R.W. J Mol Biol 123, 417-30 (1978). [no abstract available]
469. Quantitative Electron Microscopy of Nucleic Acids.
     Ferguson, J., Davis, R.W. In Advanced Techniques in Biological Electron Microscopy II (ed. Koehler, J.K.) 123-171 (Springer Verlag,, Berlin-Heidelberg, 1978)
470. Production of a functional eukaryotic enzyme in Escherichia coli: cloning and expression of the yeast structural gene for imidazole-glycerolphosphate dehydratase (his3).
     Struhl, K. & Davis, R.W. Proc Natl Acad Sci U S A 74, 5255-9 (1977). [PubMed]
471. The effects of Escherichia coli and yeast DNA insertions on the growth of lambda bacteriophage.
     Cameron, J.R. & Davis, R.W. Science 196, 212-5 (1977). [PubMed]
472. Five hundredfold overproduction of DNA ligase after induction of a hybrid lambda lysogen constructed in vitro.
     Panasenko, S.M., Cameron, J.R., Davis, R.W. & Lehman, I.R. Science 196, 188-9 (1977). [PubMed]
473. Screening lambdagt recombinant clones by hybridization to single plaques in situ.
     Benton, W.D. & Davis, R.W. Science 196, 180-2 (1977). [no abstract available]
474. Analysis of chromosomal integration and deletions of yeast plasmids.
     Cameron, J.R., Philippsen, P. & Davis, R.W. Nucleic Acids Res 4, 1429-48 (1977). [PubMed]
475. Cloning of Satillite DNA Sequences with the l Vector lgt-araB.
     Phillipsen, P., Lee, C.S., Davis, R.W. In Eukaryotic Genetic System: ICN-UCLA Symposia on Molecular and Cellular Biology VIII 63-72 (1977).
476. Genetic and Physical Selection of Eukaryotic Genes Cloned in E. coli.
     Davis, R.W., Thomas, M., Cameron, J.R., Philippsen, P., Kramer, R., St. John, T., Stuhl, K., Ferguson, J. In Caltech Symposium, Molecular Biology of the Mammalian Genetic Apparatus (ed. P. Ts'O, E.N.-H.B.P.) 16-27 (1977).
477. Rapid Selection and screening Methods for the Isolation of Particular Cloned Eukaryotic DNA Sequences.
     Davis, R.W., Thomas, M., Benton, D., Cameron, J., Philippsen, P., Struhl, K., St. John, T., and Kramer, R. In Molecular Cloning of Recombinant DNA 155-160 (Academic Press, Inc, 1977)
478. Hybridization of RNA to double-stranded DNA: formation of R-loops.
     Thomas, M., White, R.L. & Davis, R.W. Proc Natl Acad Sci U S A 73, 2294-8 (1976). [PubMed]
479. Functional genetic expression of eukaryotic DNA in Escherichia coli.
     Struhl, K., Cameron, J.R. & Davis, R.W. Proc Natl Acad Sci U S A 73, 1471-5 (1976). [PubMed]
480. Kinetic Studies on the Hybridization of RNA to Double Stranded DNA.
     Thomas, M., White, R.L., Davis, R.W. In Molecular Mechanisms in the Control of Gene Expression 427 (Academic Press, Inc., New York,, 1976).
481. Genetic Selections and the Cloning of Prokaryotic and Eukaryotic Genes.
     Struhl, K., Davis, R.W. In Molecular Mechanisms in the Control of Gene Expression 495 (Academic Press, Inc., New York,, 1976).
482. Isolation of bacteriophage lambda containing yeast ribosomal RNA genes: screening by in situ RNA hybridization to plaques.
     Kramer, R.A., Cameron, J.R. & Davis, R.W. Cell 8, 227-32 (1976). [PubMed]
483. Determination of DNA concentration by electron microscopy.
     Raleigh, E.A. & Davis, R.W. Anal Biochem 72, 460-7 (1976). [no abstract available]
484. Cloning of the Ribosomal RNA Genes of Yeast.
     Kramer, R., Philippsen, P., Cameron, J., Davis, R.W. In Molecular Mechanisms in the Control of Gene Expression 481 (Academic Press, Inc., New York, 1976).
485. In vitro construction of bacteriophage lambda carrying segments of the Escherichia coli chromosome: selection of hybrids containing the gene for DNA ligase.
     Cameron, J.R., Panasenko, S.M., Lehman, I.R. & Davis, R.W. Proc Natl Acad Sci U S A 72, 3416-20 (1975). [PubMed]
486. EcoRI endonuclease cleavage map of bacteriophage P4-DNA.
     Goldstein, L., Thomas, M. & Davis, R.W. Virology 66, 420-7 (1975). [no abstract available]
487. An electron microscopic method for studying and mapping the region of weak sequence homology between simian virus 40 and polyoma DNAs.
     Ferguson, J. & Davis, R.W. J Mol Biol 94, 135-49 (1975). [no abstract available]
488. T antigen binds to simian virus 40 DNA at the origin of replication.
     Reed, S.I., Ferguson, J., Davis, R.W. & Stark, G.R. Proc Natl Acad Sci U S A 72, 1605-9 (1975). [PubMed]
489. Studies on the cleavage of bacteriophage lambda DNA with EcoRI Restriction endonuclease.
     Thomas, M. & Davis, R.W. J Mol Biol 91, 315-28 (1975). [no abstract available]
490. Isolation and characterization of individual clones of simian virus 40 mutants containing deletions duplications and insertions in their DNA.
     Mertz, J.E., Carbon, J., Herzberg, M., Davis, R.W. & Berg, P.Cold Spring Harb Symp Quant Biol 39 Pt 1, 69-84 (1975). [no abstract available]
491. Action of Escherichia coli P1 restriction endonuclease on simian virus 40 DNA.
     Risser, R., Hopkins, N., Davis, R.W., Delius, H. & Mulder, C. J Mol Biol 89, 517-44 (1974). [no abstract available]
492. Viable molecular hybrids of bacteriophage lambda and eukaryotic DNA.
     Thomas, M., Cameron, J.R. & Davis, R.W. Proc Natl Acad Sci U S A 71, 4579-83 (1974). [no abstract available]
493. Potential biohazards of recombinant DNA molecules.
     Berg, P., Baltimore, D., Boyer, H.W., Cohen, S.N., Davis, R.W., Hogness, D.S., Nathans, D., Roblin, R., Watson, J.D., Weissman, S. & Zinder, N.D. Letter: Science 185, 303 (1974). [no abstract available]
494. Cleavage of DNA by RI restriction endonuclease generates cohesive ends.
     Mertz, J.E. & Davis, R.W. Proc Natl Acad Sci U S A 69, 3370-4 (1972). [no abstract available]
495. Electron Microscopy Heteroduplex Methods for Mapping Regions of Base Sequence Homology in Nucleic Acids.
     Davis, R.W., Simon, M.N., Davidson, N. Methods in Enzymology 21, 413-428 (1971).
496. A study in evolution: the DNA base sequence homology between coliphages T7 and T3.
     Davis, R.W. & Hyman, R.W. J Mol Biol 62, 287-301 (1971). [no abstract available]
497. Dual control of arabinose genes on transducing phage lambda-dara.
     Schleif, R., Greenblatt, J. & Davis, R.W. J Mol Biol 59, 127-50 (1971). [no abstract available]
498. Deletion mutants of bacteriophage lambda. 3. Physical structure of att-phi.
     Davis, R.W. & Parkinson, J.S. J Mol Biol 56, 403-23 (1971). [no abstract available]
499. Electron Microscope Heteroduplex Studies of Sequence Relations of the DNA Molecules of Lambdoid Phages.
     Simon, M.N., Davis, R.W. and Davidson, N. Cold Spring Harbor Symposium of Qualitative Biology Bacteriophage Lambda, 313-328 (1971).
500. A physical map of the left arm of the lambda chromosome.
     Parkinson, J.S., Davis, R.W. J Mol Biol 56, 425-428 (1971). [no abstract available]
501. A physical study by electron microscopy of the terminally reptitious, circularly permuted DNA from the coliphage particles of Escherichia coli 15.
     Lee, C.S., Davis, R. W., Davidson, N. J Mol Biol 48, 1-22 (1970). [no abstract available]
502. Homology and structural relationships between the dimeric and monomeric circular forms of mitochondrial DNA from human leukemic leukocytes.
     Clayton, D.A., Davis, R.W. & Vinograd, J. J Mol Biol 47, 137-53 (1970). [no abstract available]
503. The Physical Location of the In Vitro RNA Initiation Site and Termination Sites of T7M DNA.
     Davis, R.W., Hyman, R.W. Cold Spring Harbor Symposium of Qualitative Biology Vol. XXXV, 269-281 (1970).
504. The process of infection with Bacteriophage phi-X174. XXIX. In vivo studies on the synthesis of the single-stranded DNA of progeny phi-X174 bacteriophage.
     Knippers, R., Razin, A., Davis, R. & Sinsheimer, R.L.J Mol Biol 45, 237-63 (1969). [no abstract available]
505. Electron-microscopic visualization of deletion mutations.
     Davis, R.W., Davidson, N. Proc Natl Acad Sci U S A. 1968 May;60(1):243-50. [no abstract available]

updated December 16, 2020