Completed Research Projects
Clinical Genomics
- Prospective study of the predictive power of mass spectrometric profiles of plasma proteins and peptides in detecting early stage breast cancer
- Contribution of ATM mutations to breast cancer susceptibility
- Stanford Human OligoExome Resource
- The Dynamics of the Vaginal Microbiome During Infertility Therapy with In Vitro Fertilization-Embryo Transfer
- A New Human Transcriptome Array for Clinical Research
- Use of Molecular Probes with Barcodes to Identify Microbes
- A New Statistical Method for Time Course Microarray Experiments
- Viral Metagenomics Discovering New Viruses
- Wide Spectrum Viral And Target Gene Enrichment
- High-throughput Proteomics for Biomarker Discovery
- Network Knowledge Base Analysis of High-Throughput Genomic Data
- Proximity Ligation for Protein Analyses - Multiplexing protein detection on DNA microarrays
- Cell Specific Gene Expression Pattern in Severe Trauma
- Inflammation and the host response to injury (Glue Grant)
- A New Statistical Method for Analyzing Time Course Multifactor Expression Data
- Computational Biology Group at SGTC and Data Interpretation Core of the Glue Grant
- MIPs in cancer
- A Knowledge-based Approach for Genome-wide Genotyping Analysis of Parkinson's Disease
Computational Genomics
Functional Genomics
- Functional Genomics of the Origin of Stem Cells
- Identifying and studying small molecules that inhibit meiotic development and fertility in eukaryotic organisms
- The Chemical Genomic Portrait of Yeast: Uncovering a Phenotype for All Genes
- Expression Profiling at the Microscale
- Complex Trait Analysis in Yeast
- Mitochondria in genetics and disease: proteomics of yeast mitochondria
- Yeast Genome Deletion Project
- Haplotype and linkage block structure in human genome
- Building technology to monitor alternative splicing on a genomic scale
- Yeast Chemical Genomics
Sequencing
- Gardnerella vaginalis genome project
- Atopobium vaginae genome project
- Biofuel yeast sequencing
- Gene Expression Analysis of Human Endotoxin Response
- YJM789 genome sequence
- Comparative genetic history of Samaritan patri- and matrilineages based on Y-chromosome and mitochondrial DNA sequence variation
- Maize gene discovery project: RescueMu and EST sequencing
- Human sequencing project
- Cryptococcus neoformans genome project
- Malaria genome project: plasmodium falciparum chromosome 12
- Candida albicans
- Arabidopsis sequencing
- Global expression studies of the Arabidopsis genome
- Chlamydia
- Saccharomyces