I am a PhD candidate with interests in HIV/AIDS and causal inference. I am interested in novel statistical techniques aiming to improve transportability of average treatment effects across different populations/environments.

Honors & Awards

  • Stanford Graduate Fellowship (SGF), Stanford University (2016)

Education & Certifications

  • MPH, Columbia University, Epidemiology
  • Bachelor of Science, University of Cape Town, Chemistry & Molecular Cell Biology


All Publications

  • Dealing With Binary Repeated Measures Data PM&R Tchakoute, C., Sainani, K. L. 2018; 10 (12): 1412?16

    View details for PubMedID 30472244

  • Breastfeeding mitigates the effects of maternal HIV on infant infectious morbidity in the Option B+ era: A multicenter prospective cohort study. AIDS (London, England) Tchakoute, C. T., Sainani, K. L., Osawe, S., Datong, P., Kiravu, A., Rosenthal, K. L., Gray, C. M., Cameron, D. W., Abimiku, A., Jaspan, H. B., INFANT study team* 2018


    OBJECTIVE: The effects of in-utero HIV-exposure on infectious morbidity and mortality in settings with universal maternal treatment and high breastfeeding rates are unclear. Further, the benefits of exclusive feeding options have not been assessed in the Option B+ era. We investigated these in two African settings with high breastfeeding uptake and good HIV treatment infrastructure during the first year of life.METHODS: Cox regression with time-changing variables in a birth cohort of 749 HIV-exposed uninfected and HIV-unexposed uninfected infants from Cape Town, South Africa and Jos, Nigeria.RESULTS: There was no difference in infectious morbidity incidence between HIV-exposed uninfected and HIV-unexposed uninfected infants (hazard ratio [HR], 1.01; 95% CI, 0.78-1.32) after adjusting for confounding variables. Formula-fed infants had significantly higher infectious morbidity incidence when compared with exclusively-breastfed infants ([HR], 1.64; 95% CI, 1.03-2.63) and mixed-breastfed infants ([HR], 1.42; 95% CI, 1.00-2.02) after adjusting for potential confounding variables. There was no significant difference in mortality among HIV-exposed infants and HIV-unexposed infants during the first year of life in this cohort (2.04% versus 0.94%, p-value?=?0.38). Notably, exclusive breastfeeding for only 4 months had protective effects on morbidity up to 1 year.CONCLUSION: In settings with universal antiretroviral coverage and high breastfeeding rates, breastfeeding mitigates the effects of in-utero HIV exposure among infants during the first year of life. These findings support previous recommendations for exclusive breastfeeding among HIV-infected women and highlight the role that breastfeeding plays on the health of infants in settings where exclusive breastfeeding is not always feasible or where replacement feeding is recommended.

    View details for DOI 10.1097/QAD.0000000000001974

    View details for PubMedID 30134300

  • Semantic Memory in the Clinical Progression of Alzheimer Disease COGNITIVE AND BEHAVIORAL NEUROLOGY Tchakoute, C. T., Sainani, K. L., Henderson, V. W. 2017; 30 (3): 81?89


    Semantic memory measures may be useful in tracking and predicting progression of Alzheimer disease. We investigated relationships among semantic memory tasks and their 1-year predictive value in women with Alzheimer disease.We conducted secondary analyses of a randomized clinical trial of raloxifene in 42 women with late-onset mild-to-moderate Alzheimer disease. We assessed semantic memory with tests of oral confrontation naming, category fluency, semantic recognition and semantic naming, and semantic density in written narrative discourse. We measured global cognition (Alzheimer Disease Assessment Scale, cognitive subscale), dementia severity (Clinical Dementia Rating sum of boxes), and daily function (Activities of Daily Living Inventory) at baseline and 1 year.At baseline and 1 year, most semantic memory scores correlated highly or moderately with each other and with global cognition, dementia severity, and daily function. Semantic memory task performance at 1 year had worsened one-third to one-half standard deviation. Factor analysis of baseline test scores distinguished processes in semantic and lexical retrieval (semantic recognition, semantic naming, confrontation naming) from processes in lexical search (semantic density, category fluency). The semantic-lexical retrieval factor predicted global cognition at 1 year. Considered separately, baseline confrontation naming and category fluency predicted dementia severity, while semantic recognition and a composite of semantic recognition and semantic naming predicted global cognition. No individual semantic memory test predicted daily function.Semantic-lexical retrieval and lexical search may represent distinct aspects of semantic memory. Semantic memory processes are sensitive to cognitive decline and dementia severity in Alzheimer disease.

    View details for PubMedID 28926415

    View details for PubMedCentralID PMC5617354

  • Risk factors and temporal trends of hospital-acquired infections (HAIs) among HIV positive patients in urban New York City hospitals: 2006 to 2014. Reviews on recent clinical trials Tchakoute, C. T., Larson, E., Liu, J., Cohen, B. 2016: -?


    HIV-infected patients may be at a greater risk of hospital-acquired infections (HAIs) but risks factors for HAIs have not been well described in this population.The aim of this study was to examine the incidence, temporal trends and risk factors of HAIs among adult HIV positive patients.This was a retrospective cohort study carried out in an academic health system in New York City which included four hospitals over a 9-year period from 2006 to 2014. Simple and multiple logistic regression models were built to determine risk factors associated with site-specific HAIs such as urinary tract infections (UTIs), pneumonia (PNUs) and bloodstream infections (BSIs).There were 10,575 HIV positive discharges and 1,328 had HAIs: 697 UTIs, 555 BSIs and 192 PNUs. The incidence rate of HAIs decreased from 13.9 to 10.7 new infections per 100 discharges between 2006 and 2014 (p value<0.001). In addition to the expected risk factors of urinary catheter use for UTI and central venous line use for BSI, symptomatic HIV and renal failure were significant risk factors for both UTIs (95% CI OR:(1.24, 2.27) and (1.46, 2.11) respectively) and BSIs ( 95% CIs OR:(2.28, 4.18) and (1.81, 2.71) respectively).HIV-infected patients had similar risk factors for HAIs as HIV-uninfected patients, but had higher rates of HAIs when compared with published rates for non-HIV+ patients. Further research is required to address how patients' CD4 counts and viral loads affect their susceptibility to HAIs.

    View details for PubMedID 27600109

    View details for PubMedCentralID PMC5337446

  • Reply to Thysen et al. journal of infectious diseases Tchakoute, C. T., Hesseling, A. C., Blakney, A. K., Jaspan, H. B. 2015; 212 (8): 1342-1343

    View details for DOI 10.1093/infdis/jiv199

    View details for PubMedID 25821228

    View details for PubMedCentralID PMC4577041

  • Delayed BCG vaccination results in minimal alterations in T cell immunogenicity of acellular pertussis and tetanus immunizations in HIV-exposed infants VACCINE Blakney, A. K., Tchakoute, C. T., Hesseling, A. C., Kidzeru, E. B., Jones, C. E., Passmore, J. S., Sodora, D. L., Gray, C. M., Jaspan, H. B. 2015; 33 (38): 4782-4789


    Bacille Calmette-Guerin (BCG) is effective in preventing disseminated tuberculosis (TB) in children but may also have non-specific benefits, and is thought to improve immunity to unrelated antigens through trained innate immunity. In HIV-infected infants, there is a risk of BCG-associated adverse events. We aimed to explore whether delaying BCG vaccination by 8 weeks, in utero or perinatal HIV infection is excluded, affected T-cell responses to B. pertussis (BP) and tetanus toxoid (TT), in HIV-exposed, uninfected infants.Infants were randomized to receive BCG vaccination at birth or 8 weeks of age. At 8 and 14 weeks, T cell proliferation and intracellular cytokine (IL-2, IL-13, IL-17, and IFN-?) expression was analyzed in response to BP, TT and Staphylococcal enterotoxin B (SEB) antigens.Delaying BCG vaccination did not alter T-cell proliferation to BP or TT antigens. Infants immunized with BCG at birth had higher CD4+ T cell proliferation to SEB at 14 weeks of age (p=0.018). Birth-vaccinated infants had increased CD8+ IL-2 expression in response to BP, but not TT or SEB, at 8 weeks. Infants vaccinated with BCG at 8 weeks had significantly lower IL-13 expression by BP-specific CD4+ and CD8+ T cells at 14 weeks (p=0.032 and p=0.0035, respectively). There were no observed differences in multifunctional cytokine response to TT, BP or SEB between infants vaccinated with BCG at birth versus 8 weeks of age.Delaying BCG vaccination until 8 weeks of age results in robust T-cellular responses to BP and TT in HIV-exposed infants.NCT02062580.

    View details for DOI 10.1016/j.vaccine.2015.07.096

    View details for Web of Science ID 000361583100009

    View details for PubMedID 26259542

    View details for PubMedCentralID PMC4562895

  • Delaying BCG Vaccination Until 8 Weeks of Age Results in Robust BCG-Specific T-Cell Responses in HIV-Exposed Infants JOURNAL OF INFECTIOUS DISEASES Tchakoute, C. T., Hesseling, A. C., Kidzeru, E. B., Gamieldien, H., Passmore, J. S., Jones, C. E., Gray, C. M., Sodora, D. L., Jaspan, H. B. 2015; 211 (3): 338-346


    BCG vaccination prevents disseminated tuberculosis in children, but it is contraindicated for persons with human immunodeficiency virus (HIV) infection because it can result in severe disease in this population. In tuberculosis-endemic regions, BCG vaccine is administered soon after birth, before in utero and peripartum HIV infection is excluded. We therefore assessed the immunogenicity of BCG vaccine in HIV-exposed infants who received BCG at birth or at 8 weeks of age.HIV-exposed, uninfected infants were randomly assigned to receive BCG vaccination at birth (the early vaccination arm) or 8 weeks of age (the delayed vaccination arm). BCG-specific proliferative and intracellular cytokine responses were assessed in 28 infants per arm at 6, 8, and 14 weeks of life.There was no difference in BCG-specific T-cell proliferation between the study arms 6 weeks after vaccination. However, at 14 weeks of age, the frequency of interferon ?-expressing CD4(+) T cells and multifunctional BCG-specific responses in the delayed vaccinated arm were significantly higher than those in the early vaccination arm (P = .021 and P = .011, respectively).The immunogenicity of BCG vaccination in HIV-exposed, uninfected infants is not compromised when delayed until 8 weeks of age and results in robust BCG-specific T-cell responses at 14 weeks of age. These findings support further evaluation of this modified BCG vaccination strategy for HIV-exposed infants.NCT02062580.

    View details for DOI 10.1093/infdis/jiu434

    View details for Web of Science ID 000350221500002

    View details for PubMedID 25108027

    View details for PubMedCentralID PMC4318913

  • In-utero exposure to maternal HIV infection alters T-cell immune responses to vaccination in HIV-uninfected infants AIDS Kidzeru, E. B., Hesseling, A. C., Passmore, J. S., Myer, L., Gamieldien, H., Tchakoute, C. T., Gray, C. M., Sodora, D. L., Jaspan, H. B. 2014; 28 (10): 1421-1430


    In sub-Saharan Africa, HIV-exposed uninfected (HEU) infants have higher morbidity and mortality than HIV-unexposed infants. To evaluate whether immune dysfunction contributes to this vulnerability of HEU infants, we conducted a longitudinal, observational cohort study to assess T-cell immune responses to infant vaccines (Mycobacterium bovis BCG and acellular pertussis) and staphylococcal enterotoxin B (SEB). In total, 46 HEU and 46 HIV-unexposed infants were recruited from Khayelitsha, Cape Town.Vaccine-specific T-cell proliferation (Ki67 expression) and intracellular expression of four cytokines [interferon-?, interleukin (IL)-2, IL-13 and IL-17] were measured after whole blood stimulation with antigens at 6 and 14 weeks of age.HEU infants demonstrated elevated BCG-specific CD4 and CD8 T-cell proliferative responses at 14 weeks (P ?= 0.041 and 0.002, respectively). These responses were significantly increased even after adjusting for birth weight, feeding mode and gestational age. Similar to BCG, increased CD4 and CD8 T-cell proliferation was evident in response to SEB stimulation (P ?= 0.004 and 0.002, respectively), although pertussis-specific T cells proliferated comparably between the two groups. Within HEU infants, maternal CD4 cell count and length of antenatal antiretroviral exposure had no effect on T-cell proliferation to BCG or SEB. HIV exposure significantly diminished measurable cytokine polyfunctionality in response to BCG, Bordetella pertussis and SEB stimulation.These data show for the first time, when adjusting for confounders, that exposure to HIV in utero is associated with significant alterations to CD4 and CD8T-cell immune responses in infants to vaccines and nonspecific antigens.

    View details for DOI 10.1097/QAD.0000000000000292

    View details for Web of Science ID 000337705400005

    View details for PubMedID 24785950

    View details for PubMedCentralID PMC4333196

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