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Manuel Rivas
Assistant Professor of Biomedical Data Science
Print Profile
Email Profile
Bio
Bio
Teaching
Publications
Academic Appointments
Assistant Professor,
Biomedical Data Science
Member,
Bio-X
Honors & Awards
Clarendon Scholar, University of Oxford (2010-2015)
Osler Award, University of Oxford (2010-2015)
Gates Millenium Scholar, Bill & Melinda Gates Foundation (2004-2008)
Professional Education
DPhil, University of Oxford, Clinical Medicine (2015)
B.S., Massachusetts Institute of Technology, Mathematics (2008)
Contact
Academic
mrivas@stanford.edu
Tel: (650) 724-6077
Links
NIH Biosketch PDF
My Lab Site
2023-24 Courses
Generative AI in Healthcare
BIODS 295, DESIGN 266 (Spr)
Workshop in Biostatistics
BIODS 260A, STATS 260A (Aut)
Independent Studies
Biomedical Informatics Teaching Methods
BIOMEDIN 290 (Aut, Win, Spr)
Directed Reading and Research
BIODS 299 (Aut, Win, Spr, Sum)
Directed Reading and Research
BIOMEDIN 299 (Aut, Win, Spr, Sum)
Master's Research
CME 291 (Aut, Win)
Medical Scholars Research
BIOMEDIN 370 (Aut, Win, Spr)
Prior Year Courses
2020-21 Courses
Analytics Accelerator
BIODS 217, CME 217 (Aut, Win)
Cloud Computing for Biology and Healthcare
BIOMEDIN 222, CS 273C, GENE 222 (Spr)
Topics in Biomedical Data Science: Large-scale inference
BIODS 215 (Win)
Workshop in Biostatistics
BIODS 260B, STATS 260B (Win)
Stanford Advisees
Doctoral Dissertation Reader (AC)
Rosa Ma
All Publications
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Publications (116)
All Publications
(116)
Featured Publications
(34)
Journal Articles
(115)
Conference Proceedings
(1)
Profiles With Related Publications
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Nicolas Altemose
Assistant Professor of Genetics
Research Interests
The Altemose Lab develops new experimental and analytical tools to study how chromatin proteins organize and regulate complex regions of the human genome.
18
Total Publications
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Themistocles (Tim) Assimes
Associate Professor of Medicine (Cardiovascular Medicine) and, by courtesy, of Epidemiology and Population Health
Research Interests
Genetic Epidemiology, Genetic Determinants of Complex Traits related to Cardiovasular Medicine, Coronary Artery Disease related pathway analyses and integrative genomics, Mendelian randomization studies, risk prediction for major adverse cardiovascular events, cardiovascular medicine related pharmacogenomics, ethnic differences in the determinants of Insulin Mediated Glucose Uptake, pharmacoepidemiology of cardiovascular drugs & outcomes
323
Total Publications
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Jennifer Caswell-Jin
Assistant Professor of Medicine (Oncology)
Clinical Focus
Medical Oncology
Research Interests
My research is on the translational application of next-generation sequencing technologies to breast cancer care: (1) the value of hereditary cancer genetic panel testing in clinical practice, (2) the mechanisms by which inherited genetic variants lead to breast cancer development, and (3) the analysis of somatic tumor sequencing data to inform understanding of breast tumorigenesis, metastasis, and development of resistance in response to therapeutics.
38
Total Publications
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Ivana Cvijovic
Postdoctoral Scholar, Applied Physics
7
Total Publications
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Jesse Engreitz
Assistant Professor of Genetics
Research Interests
Regulatory elements in the human genome harbor thousands of genetic risk variants for common diseases and could reveal targets for therapeutics — if only we could map the complex regulatory wiring that connects 2 million regulatory elements with 21,000 genes in thousands of cell types in the human body.
We combine experimental and computational genomics, biochemistry, molecular biology, and genetics to assemble regulatory maps of the human genome and uncover biological mechanisms of disease.
62
Total Publications
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Marcus Feldman
Burnet C. and Mildred Finley Wohlford Professor
552
Total Publications
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Hunter Fraser
Professor of Biology
Research Interests
We study the evolution of complex traits by developing new experimental and computational methods.
Our work brings together quantitative genetics, genomics, epigenetics, and evolutionary biology to achieve a deeper understanding of how genetic variation shapes the phenotypic diversity of life. Our main focus is on the evolution of gene expression, which is the primary fuel for natural selection. Our long-term goal is to be able to introduce complex traits into new species via genome editing.
93
Total Publications
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Anna L Gloyn
Professor of Pediatrics (Endocrinology) and of Genetics
Research Interests
Anna's current research projects are focused on the translation of genetic association signals for type 2 diabetes and glycaemic traits into cellular and molecular mechanisms for beta-cell dysfunction and diabetes. Her group uses a variety of complementary approaches, including human genetics, functional genomics, physiology and islet-biology to dissect out the molecular mechanisms driving disease pathogenesis.
195
Total Publications
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Joachim Hallmayer
Professor of Psychiatry and Behavioral Sciences
242
Total Publications
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Zihuai He
Assistant Professor (Research) of Neurology (Neurology Research Faculty), of Medicine (BMIR) and, by courtesy, of Biomedical Data Science
63
Total Publications
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John P.A. Ioannidis
Professor of Medicine (Stanford Prevention Research), of Epidemiology and Population Health and by courtesy, of Statistics and of Biomedical Data Science
Research Interests
Meta-research
Evidence-based medicine
Clinical and molecular epidemiology
Human genome epidemiology
Research design
Reporting of research
Empirical evaluation of bias in research
Randomized trials
Statistical methods and modeling
Meta-analysis and large-scale evidence
Prognosis, predictive, personalized, precision medicine and health
Sociology of science
1450
Total Publications
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Esther M. John
Professor (Research) of Epidemiology and Population Health and of Medicine (Oncology)
581
Total Publications
Publication Topics For This Person
Alleles
Case-Control Studies
Data Interpretation, Statistical
Databases, Nucleic Acid
Diabetes Mellitus, Type 2
Exome
Exons
Gene Expression Profiling
Gene Expression Regulation
Gene Frequency
Genetic Association Studies
Genetic Predisposition to Disease
Genetic Variation
Genetics, Population
Genome, Human
Genome-Wide Association Study
Genotype
High-Throughput Nucleotide Sequencing
Mutation
Organ Specificity
Phenotype
Polymorphism, Single Nucleotide
Quantitative Trait Loci
RNA, Messenger
Risk Factors
Sequence Analysis, DNA
Sequence Analysis, RNA
Transcriptome
Triglycerides
Whites