Publications

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  • A microneedle device for rapid dermal interstitial fluid samplingScience advancesHung, A. H., Kamat, N. U., Bermudez, A., Boczek, S. M., Garcia-Marqués, F. J., Tan, Y. L., Hwang, J. L., Sinawang, P. D., Ilyin, D., Jacobson, G. B., Demirci, U., Poplack, S. P., Pitteri, S. J., DeSimone, J. M.2025; 11 (39): eadx5492
  •         View details for DOI 10.1126/sciadv.adx5492
  • FTO inhibition attenuates renal fibrosis by downregulating ferroptosis activator ACSL4 and profibrotic factor TGFBI ISCIENCEZhang, D., Chiu, C., Wen, R., Qiu, Z., Garcia-Marques, F., Bermudez, A., Zhao, M., Zhao, H., Dixon, S. J., Peehl, D. M., Rankin, E. B., Pitteri, S., Brooks, J. D.2025; 28 (10)
  •         View details for DOI 10.1016/j.isci.2025.113515
  • Extracellular Domain Shedding of TROP2 Activates EGFR Signaling to Drive Prostate Cancer MetastasisCancer research Liu, S., Hsu, E. C., Aslan, M., Garcia-Marques, F., Shen, M., Hartono, A. B., Solano, F., Le, K., Hwang, H., Lee, C. S., Bermudez, A., Nolley, R., Peehl, D. M., Brooks, J. D., Liss, M. A., Pitteri, S. J., Stoyanova, T. 2025.
  •         View details for DOI 10.1158/0008-5472.CAN-24-4855
  • Novel Aza-podophyllotoxin Derivative Inhibits Growth of Triple-Negative Breast CancerACS omega Dheeraj, A., Marques, F. J., Chennai, B., Tailor, D., Bermudez, A., Grau, B., Haley, C. B., Pitteri, S., Malhotra, S. V.2025; 10 (33): 37004-37012
  •         View details for DOI 10.1021/acsomega.5c00052
  • Integrated Plasma and Tumor Proteomics of Nasopharyngeal Carcinoma in a Moroccan Cohort. International journal of molecular sciences Reffai, A., Hori, M., Adusumilli, R., Bermudez, A., Haddad, H., Tawfiq, N., Pitteri, S., Bennani Mechita, M., Mallick, P.2025; 26 (12)
  •         View details for DOI 10.3390/ijms26125771
  • Identification of Molecular Subtypes of Clear-Cell Renal Cell Carcinoma in Patient-Derived Xenografts Using Multi-OmicsCancers Qiu, Z., Zhang, D., Garcia-Marques, F. J., Bermudez, A., Zhao, H., Peehl, D. M., Pitteri, S. J., Brooks, J. D.2025; 17 (8): 1361
  •         View details for DOI 10.3390/cancers17081361
  • The olfactory receptor OR51E2 regulates prostate cancer aggressiveness and modulates STAT3 in prostate cancer cells and in xenograft tumorsBMC cancer Thomsen, M. T., Busk, M., Zhang, D., Chiu, C. L., Zhao, H., Garcia-Marques, F. J., Bermudez, A., Pitteri, S., Borre, M., Brooks, J. D., Nyengaard, J. R.2025; 25 (1): 535
  •         View details for DOI 10.1186/s12885-025-13928-0
  • A subcellular map of translational machinery composition and regulation at the single-molecule levelScience (New York, N.Y.) Zhang, Z., Xu, A., Bai, Y., Chen, Y., Cates, K., Kerr, C., Bermudez, A., Susanto, T. T., Wysong, K., García Marqués, F. J., Nolan, G. P., Pitteri, S., Barna, M. 2025; 387 (6738): eadn2623
  •         View details for DOI 10.1126/science.adn2623
  • Intact Glycopeptide Analysis of Human Prostate Tissue Reveals Site-Specific Heterogeneity of Protein Glycosylation in Prostate CancerGlycobiology Kapp, K. L., Garcia-Marques, F., Totten, S. M., Bermudez, A., Tanimoto, C., Brooks, J. D., Pitteri, S. J. 2025; 134(24):e180282
  •         View details for DOI 10.1093/glycob/cwaf010
  • Sialylated glycoproteins suppress immune cell killing by binding to Siglec-7 and Siglec-9 in prostate cancerThe Journal of clinical investigation Wen, R. M., Stark, J. C., Marti, G. E., Fan, Z., Lyu, A., Garcia Marques, F. J., Zhang, X., Riley, N. M., Totten, S. M., Bermudez, A., Nolley, R., Zhao, H., Fong, L., Engleman, E. G., Pitteri, S. J., Bertozzi, C. R., Brooks, J. D. 2024; 134(24):e180282
  •         View details for DOI 10.1172/JCI180282
  • Ubiquitin C-terminal hydrolase L1 is a regulator of tumor growth and metastasis in double-negative prostate cancerAmerican journal of clinical and experimental urology Liu, S., Garcia-Marques, F. J., Shen, M., Bermudez, A., Pitteri, S. J., Stoyanova, T. 2024; 12 (5): 306-322
  •         View details for DOI 10.62347/JNBR1463
  • Identification of a 5-gene signature panel for the prediction of prostate cancer progressionBritish journal of cancer Shen, M., García-Marqués, F., Muruganantham, A., Liu, S., White, J. R., Bermudez, A., Rice, M. A., Thompson, K., Chen, C. L., Hung, C. N., Zhang, Z., Huang, T. H., Liss, M. A., Pienta, K. J., Pitteri, S. J., Stoyanova, T. 2024; 131(11):1748-1761
  •         View details for DOI 10.1038/s41416-024-02854-w
  • A Proteomic Analysis of Nasopharyngeal Carcinoma in a Moroccan SubpopulationCancers Reffai, A., Hori, M., Adusumilli, R., Bermudez, A., Bouzoubaa, A., Pitteri, S., Bennani Mechita, M., Mallick, P. 2024; 16 (19): 3282
  •         View details for DOI 10.3390/cancers16193282
  • Establishing and characterizing the molecular profiles, cellular features, and clinical utility of a patient-derived xenograft model using benign prostatic tissuesLaboratory investigation; a journal of technical methods and pathology Polasko, A. L., Zhang, D., Ramraj, A., Chiu, C. L., Garcia-Marques, F. J., Bermudez, A., Kapp, K., Peterson, E., Qiu, Z., Pollack, A. S., Zhao, H., Pollack, J. R., Pitteri, S. J., Brooks, J. D. 2024: 102129
  •         View details for DOI 10.1016/j.labinv.2024.102129
  • Inhibition of protein translational machinery in triple-negative breast cancer as a promising therapeutic strategyCell reports. Medicine Dheeraj, A., Garcia Marques, F. J., Tailor, D., Bermudez, A., Resendez, A., Pandrala, M., Grau, B., Kumar, P., Haley, C. B., Honkala, A., Kujur, P., Jeffrey, S. S., Pitteri, S., Malhotra, S. V. 2024: 101552
  •         View details for DOI 10.1016/j.xcrm.2024.101552
  • AZGP1 deficiency promotes angiogenesis in prostate cancerJournal of translational medicine Wen, R. M., Qiu, Z., Marti, G. E., Peterson, E. E., Marques, F. J., Bermudez, A., Wei, Y., Nolley, R., Lam, N., Polasko, A. L., Chiu, C. L., Zhang, D., Cho, S., Karageorgos, G. M., McDonough, E., Chadwick, C., Ginty, F., Jung, K. J., Machiraju, R., Mallick, P., Crowley, L., Pollack, J. R., Zhao, H., Pitteri, S. J., Brooks, J. D. 2024; 22 (1): 383
  •         View details for DOI 10.1186/s12967-024-05183-x
  • Identification and characterization of intact glycopeptides in human urineScientific reports Garcia-Marques, F., Fuller, K., Bermudez, A., Shamsher, N., Zhao, H., Brooks, J. D., Flory, M. R., Pitteri, S. J. 2024; 14 (1): 3716
  •         View details for DOI 10.1038/s41598-024-53299-3
  • UCHL1 is a potential molecular indicator and therapeutic target for neuroendocrine carcinomasCell reports. Medicine Liu, S., Chai, T., Garcia-Marques, F., Yin, Q., Hsu, E. C., Shen, M., Shaw Toland, A. M., Bermudez, A., Hartono, A. B., Massey, C. F., Lee, C. S., Zheng, L., Baron, M., Denning, C. J., Aslan, M., Nguyen, H. M., Nolley, R., Zoubeidi, A., Das, M., Kunder, C. A., Howitt, B. E., Soh, H. T., Weissman, I. L., Liss, M. A., Chin, A. I., Brooks, J. D., Corey, E., Pitteri, S. J., Huang, J., Stoyanova, T. 2024: 101381

        View details for DOI 10.1016/j.xcrm.2023.101381

Guanylate-binding protein 1 modulates proteasomal machinery in ovarian canceriScience Tailor, D., Garcia-Marques, F. J., Bermudez, A., Pitteri, S. J., Malhotra, S. V. 2023; 26 (11): 108292

        View details for DOI 10.1016/j.isci.2023.108292

A drug-like molecule engages nuclear hormone receptor DAF-12/FXR to regulate mitophagy and extend lifespanNature aging Chamoli, M., Rane, A., Foulger, A., Chinta, S. J., Shahmirzadi, A. A., Kumsta, C., Nambiar, D. K., Hall, D., Holcom, A., Angeli, S., Schmidt, M., Pitteri, S., Hansen, M., Lithgow, G. J., Andersen, J. K. 2023; 3(12):1529-1543

        View details for DOI 10.1038/s43587-023-00524-9

The role of GCNT1 mediated O-glycosylation in aggressive prostate cancerScientific reports Hodgson, K., Orozco-Moreno, M., Scott, E., Garnham, R., Livermore, K., Thomas, H., Zhou, Y., He, J., Bermudez, A., Garcia Marques, F. J., Bastian, K., Hysenaj, G., Archer Goode, E., Heer, R., Pitteri, S., Wang, N., Elliott, D. J., Munkley, J. 2023; 13 (1): 17031

        View details for DOI 10.1038/s41598-023-43019-8

Measuring the multifaceted roles of mucin-domain glycoproteins in cancerAdvances in cancer research Riley, N. M., Wen, R. M., Bertozzi, C. R., Brooks, J. D., Pitteri, S. J. 2023; 157: 83-121

        View details for DOI 10.1016/bs.acr.2022.09.001

ST6GAL1-mediated aberrant sialylation promotes prostate cancer progressionThe Journal of pathology Scott, E., Archer Goode, E., Garnham, R., Hodgson, K., Orozco-Moreno, M., Turner, H., Livermore, K., Putri Nangkana, K., Frame, F. M., Bermudez, A., Jose Garcia Marques, F., McClurg, U. L., Wilson, L., Thomas, H., Buskin, A., Hepburn, A., Duxfield, A., Bastian, K., Pye, H., Arredondo, H. M., Hysenaj, G., Heavey, S., Stopka-Farooqui, U., Haider, A., Freeman, A., Singh, S., Johnston, E. W., Punwani, S., Knight, B., McCullagh, P., McGrath, J., Crundwell, M., Harries, L., Heer, R., Maitland, N. J., Whitaker, H., Pitteri, S., Troyer, D. A., Wang, N., Elliott, D. J., Drake, R. R., Munkley, J. 2023; 261(1):71-84

        View details for DOI 10.1002/path.6152

Lineage plasticity in SCLC generates non-neuroendocrine cells primed for vasculogenic mimicryJournal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer Pearsall, S. M., Williamson, S. C., Humphrey, S., Hughes, E., Morgan, D., García Marqués, F. J., Awanis, G., Carroll, R., Burks, L., Shue, Y. T., Bermudez, A., Frese, K. K., Galvin, M., Carter, M., Priest, L., Kerr, A., Zhou, C., Oliver, T. G., Humphries, J. D., Humphries, M. J., Blackhall, F., Cannell, I. G., Pitteri, S. J., Hannon, G. J., Sage, J., Dive, C., Simpson, K. L. 2023; 18(10):1362-1385

        View details for DOI 10.1016/j.jtho.2023.07.012

Proteomics analysis of urine and catheter-associated biofilms in spinal cord injury patientsAmerican journal of clinical and experimental urology Garcia-Marques, F. J., Zakrasek, E., Bermudez, A., Polasko, A. L., Liu, S., Stoyanova, T., Brooks, J. D., Lavelle, J., Pitteri, S. J. 2023; 11 (3): 206-219

        View details for PubMedID 37441441

Upregulation of GALNT7 in prostate cancer modifies O-glycosylation and promotes tumour growthOncogene Scott, E., Hodgson, K., Calle, B., Turner, H., Cheung, K., Bermudez, A., Marques, F. J., Pye, H., Yo, E. C., Islam, K., Oo, H. Z., McClurg, U. L., Wilson, L., Thomas, H., Frame, F. M., Orozco-Moreno, M., Bastian, K., Arredondo, H. M., Roustan, C., Gray, M. A., Kelly, L., Tolson, A., Mellor, E., Hysenaj, G., Goode, E. A., Garnham, R., Duxfield, A., Heavey, S., Stopka-Farooqui, U., Haider, A., Freeman, A., Singh, S., Johnston, E. W., Punwani, S., Knight, B., McCullagh, P., McGrath, J., Crundwell, M., Harries, L., Bogdan, D., Westaby, D., Fowler, G., Flohr, P., Yuan, W., Sharp, A., de Bono, J., Maitland, N. J., Wisnovsky, S., Bertozzi, C. R., Heer, R., Guerrero, R. H., Daugaard, M., Leivo, J., Whitaker, H., Pitteri, S., Wang, N., Elliott, D. J., Schumann, B., Munkley, J. 2023; 42(12):926-937

        View details for DOI 10.1038/s41388-023-02604-x

Integrated transcriptome-proteome analyses of human stem cells reveal source-dependent differences in their regenerative signatureStem cell reportsGanguly, A., Swaminathan, G., Garcia-Marques, F., Regmi, S., Yarani, R., Primavera, R., Chetty, S., Bermudez, A., Pitteri, S. J., Thakor, A. S. 2022; 18(1):190-204

        View details for DOI 10.1016/j.stemcr.2022.11.006

SU086, an inhibitor of HSP90, impairs glycolysis and represents a treatment strategy for advanced prostate cancerCell reports. MedicineRice, M. A., Kumar, V., Tailor, D., Garcia-Marques, F. J., Hsu, E., Liu, S., Bermudez, A., Kanchustambham, V., Shankar, V., Inde, Z., Alabi, B. R., Muruganantham, A., Shen, M., Pandrala, M., Nolley, R., Aslan, M., Ghoochani, A., Agarwal, A., Buckup, M., Kumar, M., Going, C. C., Peehl, D. M., Dixon, S. J., Zare, R. N., Brooks, J. D., Pitteri, S. J., Malhotra, S. V., Stoyanova, T. 2022; 3 (2): 100502

        View details for DOI 10.1016/j.xcrm.2021.100502

Protein signatures to distinguish aggressive from indolent prostate cancerThe Prostate Garcia-Marques, F., Liu, S., Totten, S. M., Bermudez, A., Tanimoto, C., Hsu, E. C., Nolley, R., Hembree, A., Stoyanova, T., Brooks, J. D., Pitteri, S. J. 2022; 82(5):605-616

        View details for DOI 10.1002/pros.24307

Engineered Cell-Derived Vesicles Displaying Targeting Peptide and Functionalized with Nanocarriers for Therapeutic microRNA Delivery to Triple-Negative Breast Cancer in MiceAdvanced healthcare materials Bose, R. J., Kumar, U. S., Garcia-Marques, F., Zeng, Y., Habte, F., McCarthy, J. R., Pitteri, S., Massoud, T. F., Paulmurugan, R. 2021: e2101387

        View details for DOI 10.1002/adhm.202101387

Discovery of indole-modified aptamers for highly specific recognition of protein glycoformsNature communications Yoshikawa, A. M., Rangel, A., Feagin, T., Chun, E. M., Wan, L., Li, A., Moekl, L., Wu, D., Eisenstein, M., Pitteri, S., Soh, H. T.2021; 12 (1): 7106

        View details for DOI 10.1038/s41467-021-26933-1

Multi-omics analysis of spatially distinct stromal cells reveals tumor-induced O-glycosylation of the CDK4-pRB axis in fibroblasts at the invasive tumor edgeCancer research Bouchard, G., Garcia-Marques, F. J., Karacosta, L. G., Zhang, W., Bermudez, A., Riley, N. M., Varma, S., Mehl, L. C., Benson, J. A., Shrager, J. B., Bertozzi, C. R., Pitteri, S. J., Giaccia, A. J., Plevritis, S. K. 2021; 82(4):648-664

        View details for DOI 10.1158/0008-5472.CAN-21-1705

Y box binding protein 1 inhibition as a targeted therapy for ovarian cancerCell chemical biology Tailor, D., Resendez, A., Garcia-Marques, F. J., Pandrala, M., Going, C. C., Bermudez, A., Kumar, V., Rafat, M., Nambiar, D. K., Honkala, A., Le, Q., Sledge, G. W., Graves, E., Pitteri, S. J., Malhotra, S. V. 2021; 28(8):1206-1220. e6

        View details for DOI 10.1016/j.chembiol.2021.02.014

Discovery of CASP8 as a potential biomarker for high-risk prostate cancer through a high-multiplex immunoassay. Scientific reports Liu, S., Garcia-Marques, F., Zhang, C. A., Lee, J. J., Nolley, R., Shen, M., Hsu, E. C., Aslan, M., Koul, K., Pitteri, S. J., Brooks, J. D., Stoyanova, T. 2021; 11 (1): 7612

        View details for DOI 10.1038/s41598-021-87155-5

MCM2-7 complex is a novel druggable target for neuroendocrine prostate cancer. Scientific reportsHsu, E. C., Shen, M., Aslan, M., Liu, S., Kumar, M., Garcia-Marques, F., Nguyen, H. M., Nolley, R., Pitteri, S. J., Corey, E., Brooks, J. D., Stoyanova, T. 2021; 11 (1): 13305

        View details for DOI 10.1038/s41598-021-92552-x

Oncogene-mediated metabolic gene signature predicts breast cancer outcomeNPJ breast cancer Aslan, M., Hsu, E. C., Garcia-Marques, F. J., Bermudez, A., Liu, S., Shen, M., West, M., Zhang, C. A., Rice, M. A., Brooks, J. D., West, R., Pitteri, S. J., Győrffy, B., Stoyanova, T. 2021; 7 (1): 141

        View details for DOI 10.1038/s41523-021-00341-6

Enrichment of Intact Glycopeptides Using Strong Anion Exchange and Electrostatic Repulsion Hydrophilic Interaction ChromatographyMethods in molecular biology (Clifton, N.J.) Bermudez, A., Pitteri, S. J. 2021; 2271: 107–20

        View details for DOI 10.1007/978-1-0716-1241-5_8

A Pragmatic Guide to Enrichment Strategies for Mass Spectrometry-Based GlycoproteomicsMolecular & cellular proteomics : MCP Riley, N. M., Bertozzi, C. R., Pitteri, S. J. 2020; 20: 100029

        View details for DOI 10.1074/mcp.R120.002277

Reconstructed Apoptotic Bodies as Targeted "Nano Decoys" to Treat Intracellular Bacterial Infections within Macrophages and Cancer CellsACS nanoBose, R. J., Tharmalingam, N., Garcia Marques, F. J., Sukumar, U. K., Natarajan, A., Zeng, Y., Robinson, E., Bermudez, A., Chang, E., Habte, F., Pitteri, S. J., McCarthy, J. R., Gambhir, S. S., Massoud, T. F., Mylonakis, E., Paulmurugan, R. 2020; 14, 5, 5818–5835

        View details for DOI 10.1021/acsnano.0c00921

Discovery of PTN as a serum-based biomarker of pro-metastatic prostate cancerBritish journal of cancer Liu, S., Shen, M., Hsu, E. C., Zhang, C. A., Garcia-Marques, F., Nolley, R., Koul, K., Rice, M. A., Aslan, M., Pitteri, S. J., Massie, C., George, A., Brooks, J. D., Gnanapragasam, V. J., Stoyanova, T. 2020; 124(5):896-900. 

        View details for DOI 10.1038/s41416-020-01200-0

Novel Aza-podophyllotoxin derivative induces oxidative phosphorylation and cell death via AMPK activation in triple-negative breast cancerBritish journal of cancer Tailor, D., Going, C. C., Resendez, A., Kumar, V., Nambiar, D. K., Li, Y., Dheeraj, A., LaGory, E. L., Ghoochani, A., Birk, A. M., Stoyanova, T., Ye, J., Giaccia, A. J., Le, Q. T., Singh, R. P., Sledge, G. W., Pitteri, S. J., Malhotra, S. V. 2020; 124, 604–615

        View details for DOI 10.1038/s41416-020-01137-4

LARP1 binding to hepatitis C virus particles is correlated with intracellular retention of viral infectivityVirus research Plissonnier, M., Cottarel, J., Piver, E., Kullolli, M., Centonze, F. G., Pitteri, S., Farhan, H., Meunier, J., Zoulim, F., Parent, R. 2019; 197679

        View details for DOI 10.1016/j.virusres.2019.197679

Proteomic Identification and Time-Course Monitoring of Secreted Proteins During Expansion of Human Mesenchymal Stem/Stromal in Stirred-Tank BioreactorFrontiers in bioengineering and biotechnology Mizukami, A., Thomé, C. H., Ferreira, G. A., Lanfredi, G. P., Covas, D. T., Pitteri, S. J., Swiech, K., Faça, V. M. 2019; 7: 154

        View details for DOI 10.3389/fbioe.2019.00154

Honey bee Royalactin unlocks conserved pluripotency pathway in mammals. Nature communications Wan, D. C., Morgan, S. L., Spencley, A. L., Mariano, N., Chang, E. Y., Shankar, G., Luo, Y., Li, T. H., Huh, D., Huynh, S. K., Garcia, J. M., Dovey, C. M., Lumb, J., Liu, L., Brown, K. V., Bermudez, A., Luong, R., Zeng, H., Mascetti, V. L., Pitteri, S. J., Wang, J., Tu, H., Quarta, M., Sebastiano, V., Nusse, R., Rando, T. A., Carette, J. E., Bazan, J. F., Wang, K. C. 2018; 9 (1): 5078

        View details for DOI 10.1038/s41467-018-06256-4

Quantitative Proteomic Profiling Reveals Key Pathways in the Anticancer Action of Methoxychalcone Derivatives in Triple Negative Breast Cancer. Journal of proteome research Going, C. C., Tailor, D., Kumar, V., Birk, A. M., Pandrala, M., Rice, M. A., Stoyanova, T., Malhotra, S., Pitteri, S. J. 2018; 17(10):3574-3585

        View details for DOI 10.1021/acs.jproteome.8b00636

CRISPR-Mediated Reorganization of Chromatin Loop Structure. Journal of visualized experiments : JoVE Morgan, S. L., Chang, E. Y., Mariano, N. C., Bermudez, A., Arruda, N. L., Wu, F., Luo, Y., Shankar, G., Huynh, S. K., Huang, C., Pitteri, S. J., Wang, K. C. 2018; 14:(139):57457

        View details for DOI 10.3791/57457

Tumor Cell-Derived Extracellular Vesicle-Coated Nanocarriers: An Efficient Theranostic Platform for the Cancer-Specific Delivery of Anti-miR-21 and Imaging Agents. ACS nano Jc Bose, R., Uday Kumar, S., Zeng, Y., Afjei, R., Robinson, E., Lau, K., Bermudez, A., Habte, F., Pitteri, S. J., Sinclair, R., Willmann, J. K., Massoud, T. F., Gambhir, S. S., Paulmurugan, R. 2018; 12(11):10817-10832

        View details for DOI 10.1021/acsnano.8b02587

Integrative Personal Omics Profiles during Periods of Weight Gain and LossCell systems  Piening, B. D., Zhou, W., Contrepois, K., Röst, H., Gu Urban, G. J., Mishra, T., Hanson, B. M., Bautista, E. J., Leopold, S., Yeh, C. Y., Spakowicz, D., Banerjee, I., Chen, C., Kukurba, K., Perelman, D., Craig, C., Colbert, E., Salins, D., Rego, S., Lee, S., Zhang, C., Wheeler, J., Sailani, M. R., Liang, L., Abbott, C., Gerstein, M., Mardinoglu, A., Smith, U., Rubin, D. L., Pitteri, S., Sodergren, E., McLaughlin, T. L., Weinstock, G. M., Snyder, M. P. 2018; 6(2):157-170.e8

Multi-lectin Affinity Chromatography and Quantitative Proteomic Analysis Reveal Differential Glycoform Levels between Prostate Cancer and Benign Prostatic Hyperplasia Sera. Scientific reports  Totten, S. M., Adusumilli, R., Kullolli, M., Tanimoto, C., Brooks, J. D., Mallick, P., Pitteri, S. J. 2018; 8 (1): 6509

Mapping and quantification of over 2,000 O-linked glycopeptides in activated human T cells with isotope-targeted glycoproteomics (IsoTaG)Molecular & cellular proteomics : MCP  Woo, C. M., Lund, P. J., Huang, A. C., Davis, M. M., Bertozzi, C. R., Pitteri, S. 2018; 17(4):764-775

How many human proteoforms are there? Nature chemical biology Aebersold, R., Agar, J. N., Amster, I. J., Baker, M. S., Bertozzi, C. R., Boja, E. S., Costello, C. E., Cravatt, B. F., Fenselau, C., Garcia, B. A., Ge, Y., Gunawardena, J., Hendrickson, R. C., Hergenrother, P. J., Huber, C. G., Ivanov, A. R., Jensen, O. N., Jewett, M. C., Kelleher, N. L., Kiessling, L. L., Krogan, N. J., Larsen, M. R., Loo, J. A., Ogorzalek Loo, R. R., Lundberg, E., MacCoss, M. J., Mallick, P., Mootha, V. K., Mrksich, M., Muir, T. W., Patrie, S. M., Pesavento, J. J., Pitteri, S. J., Rodriguez, H., Saghatelian, A., Sandoval, W., Schlüter, H., Sechi, S., Slavoff, S. A., Smith, L. M., Snyder, M. P., Thomas, P. M., Uhlén, M., Van Eyk, J. E., Vidal, M., Walt, D. R., White, F. M., Williams, E. R., Wohlschlager, T., Wysocki, V. H., Yates, N. A., Young, N. L., Zhang, B. 2018; 14 (3): 206–14

Vitamin D supplementation decreases serum 27-hydroxycholesterol in a pilot breast cancer trial. Breast cancer research and treatment Going, C. C., Alexandrova, L., Lau, K., Yeh, C. Y., Feldman, D., Pitteri, S. J. 2018; 167(3):797-802

          View details for DOI 10.1007/s10549-017-4562-4

The Exosome Total Isolation Chip. ACS nano Liu, F., Vermesh, O., Mani, V., Ge, T. J., Madsen, S. J., Sabour, A., Hsu, E. C., Gowrishankar, G., Kanada, M., Jokerst, J. V., Sierra, R. G., Chang, E., Lau, K., Sridhar, K., Bermudez, A., Pitteri, S. J., Stoyanova, T., Sinclair, R., Nair, V. S., Gambhir, S. S., Demirci, U. 2017; 11(11):10712-10723

Assessing biological and technological variability in protein levels measured in pre-diagnostic plasma samples of women with breast cancer. Biomarker research Yeh, C. Y., Adusumilli, R., Kullolli, M., Mallick, P., John, E. M., Pitteri, S. J. 2017; 5: 30

Parallel Comparison of N-Linked Glycopeptide Enrichment Techniques Reveals Extensive Glycoproteomic Analysis of Plasma Enabled by SAX-ERLIC. Journal of proteome research Totten, S. M., Feasley, C. L., Bermudez, A., Pitteri, S. J. 2017; 16 (3): 1249-1260

Development of IsoTaG, a Chemical Glycoproteomics Technique for Profiling Intact N- and O-Glycopeptides from Whole Cell Proteomes. Journal of proteome research Woo, C. M., Felix, A., Byrd, W. E., Zuegel, D. K., Ishihara, M., Azadi, P., Iavarone, A. T., Pitteri, S. J., Bertozzi, C. R. 2017; 16 (4): 1706-1718

Multi-Lectin Affinity Chromatography for Separation, Identification, and Quantitation of Intact Protein Glycoforms in Complex Biological Mixtures. Methods in molecular biology (Clifton, N.J.) Totten, S. M., Kullolli, M., Pitteri, S. J. 2017; 1550: 99-113

Manipulation of nuclear architecture through CRISPR-mediated chromosomal looping. Nature communications Morgan, S. L., Mariano, N. C., Bermudez, A., Arruda, N. L., Wu, F., Luo, Y., Shankar, G., Jia, L., Chen, H., Hu, J. F., Hoffman, A. R., Huang, C. C., Pitteri, S. J., Wang, K. C. 2017; 8: 15993

Activation of Notch1 synergizes with multiple pathways in promoting castration-resistant prostate cancer PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA Stoyanova, T., Riedinger, M., Lin, S., Faltermeier, C. M., Smith, B. A., Zhang, K. X., Going, C. C., Goldstein, A. S., Lee, J. K., Drake, J. M., Rice, M. A., Hsu, E., Nowroozizadeh, B., Castor, B., Orellana, S. Y., Blum, S. M., Cheng, D., Pienta, K. J., Reiter, R. E., Pitteri, S. J., Huang, J., Witte, O. N. 2016; 113 (42): E6457-E6466

Proteomic Analysis of Epithelial to Mesenchymal Transition (EMT) Reveals Cross-talk between SNAIL and HDAC1 Proteins in Breast Cancer Cells. Molecular & cellular proteomics Palma, C. d., Grassi, M. L., Thomé, C. H., Ferreira, G. A., Albuquerque, D., Pinto, M. T., Ferreira Melo, F. U., Kashima, S., Covas, D. T., Pitteri, S. J., Faça, V. M. 2016; 15 (3): 906-917

FIG4 is a hepatitis C virus particle-bound protein implicated in virion morphogenesis and infectivity with cholesteryl ester modulation potentialjournal of general virology Cottarel, J., Plissonnier, M., Kullolli, M., Pitteri, S., Clément, S., Millarte, V., Si-Ahmed, S., Farhan, H., Zoulim, F., Parent, R. 2016; 97 (1): 69-81

Engineering cancer microenvironments for in vitro 3-D tumor models MATERIALS TODAY Asghar, W., El Assal, R., Shafiee, H., Pitteri, S., Paulmurugan, R., Demirci, U. 2015; 18 (10): 539-553

Intact MicroRNA Analysis Using High Resolution Mass Spectrometry JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY Kullolli, M., Knouf, E., Arampatzidou, M., Tewari, M., Pitteri, S. J. 2014; 25 (1): 80-87

Performance evaluation of affinity ligands for depletion of abundant plasma proteins JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES Kullolli, M., Warren, J., Arampatzidou, M., Pitteri, S. J. 2013; 939: 10-16

Autoantibody Signatures Involving Glycolysis and Splicesome Proteins Precede a Diagnosis of Breast Cancer among Postmenopausal Women CANCER RESEARCH Ladd, J. J., Chao, T., Johnson, M. M., Qiu, J., Chin, A., Israel, R., Pitteri, S. J., Mao, J., Wu, M., Amon, L. M., McIntosh, M., Li, C., Prentice, R., Disis, N., Hanash, S. 2013; 73 (5): 1502-1513

Evaluation of Known Oncoantibodies, HER2, p53, and Cyclin B1, in Prediagnostic Breast Cancer Sera CANCER PREVENTION RESEARCH Lu, H., Ladd, J., Feng, Z., Wu, M., Goodell, V., Pitteri, S. J., Li, C. I., Prentice, R., Hanash, S. M., Disis, M. L. 2012; 5 (8): 1036-1043

Quantitative Proteomic Profiling Identifies Protein Correlates to EGFR Kinase Inhibition MOLECULAR CANCER THERAPEUTICS Kani, K., Faca, V. M., Hughes, L. D., Zhang, W., Fang, Q., Shahbaba, B., Luethy, R., Erde, J., Schmidt, J., Pitteri, S. J., Zhang, Q., Katz, J. E., Gross, M. E., Plevritis, S. K., McIntosh, M. W., Jain, A., Hanash, S., Agus, D. B., Mallick, P. 2012; 11 (5): 1071-1081

Microparticles From Ovarian Carcinomas Are Shed Into Ascites and Promote Cell Migration INTERNATIONAL JOURNAL OF GYNECOLOGICAL CANCER Press, J. Z., Reyes, M., Pitteri, S. J., Pennil, C., Garcia, R., Goff, B. A., Hanash, S. M., Swisher, E. M. 2012; 22 (4): 546-552

Concordant Release of Glycolysis Proteins into the Plasma Preceding a Diagnosis of ER+ Breast Cancer CANCER RESEARCH Amon, L. M., Pitteri, S. J., Li, C. I., McIntosh, M., Ladd, J. J., Disis, M., Porter, P., Wong, C. H., Zhang, Q., Lampe, P., Prentice, R. L., Hanash, S. M. 2012; 72 (8): 1935-1942

Increased Plasma Levels of the APC-Interacting Protein MAPRE1, LRG1, and IGFBP2 Preceding a Diagnosis of Colorectal Cancer in Women CANCER PREVENTION RESEARCH Ladd, J. J., Busald, T., Johnson, M. M., Zhang, Q., Pitteri, S. J., Wang, H., Brenner, D. E., Lampe, P. D., Kucherlapati, R., Feng, Z., Prentice, R. L., Hanash, S. M. 2012; 5 (4): 655-664

Lung Cancer Signatures in Plasma Based on Proteome Profiling of Mouse Tumor Models CANCER CELL Taguchi, A., Politi, K., Pitteri, S. J., Lockwood, W. W., Faca, V. M., Kelly-Spratt, K., Wong, C., Zhang, Q., Chin, A., Park, K., Goodman, G., Gazdar, A. F., Sage, J., Dinulescu, D. M., Kucherlapati, R., DePinho, R. A., Kemp, C. J., Varmus, H. E., Hanash, S. M. 2011; 20 (3): 289-299

Tumor Microenvironment-Derived Proteins Dominate the Plasma Proteome Response during Breast Cancer Induction and Progression CANCER RESEARCH Pitteri, S. J., Kelly-Spratt, K. S., Gurley, K. E., Kennedy, J., Buson, T. B., Chin, A., Wang, H., Zhang, Q., Wong, C., Chodosh, L. A., Nelson, P. S., Hanash, S. M., Kemp, C. J. 2011; 71 (15): 5090-5100

A Proteomics Platform Combining Depletion, Multi-lectin Affinity Chromatography (M-LAC), and Isoelectric Focusing to Study the Breast Cancer Proteome ANALYTICAL CHEMISTRY Zeng, Z., Hincapie, M., Pitteri, S. J., Hanash, S., Schakwijk, J., Hogan, J. M., Wang, H., Hancock, W. S. 2011; 83 (12): 4845-4854

Plasma Proteome Profiles Associated with Inflammation, Angiogenesis, and Cancer PLOS ONE Kelly-Spratt, K. S., Pitteri, S. J., Gurley, K. E., Liggitt, D., Chin, A., Kennedy, J., Wong, C., Zhang, Q., Buson, T. B., Wang, H., Hanash, S. M., Kemp, C. J. 2011; 6 (5): e19721

Confounding Effects of Hormone Replacement Therapy in Protein Biomarker Studies CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION Pitteri, S. J., Hanash, S. M. 2011; 20 (1): 134-139

Detection of Elevated Plasma Levels of Epidermal Growth Factor Receptor Before Breast Cancer Diagnosis among Hormone Therapy Users CANCER RESEARCH Pitteri, S. J., Amon, L. M., Buson, T. B., Zhang, Y., Johnson, M. M., Chin, A., Kennedy, J., Wong, C., Zhang, Q., Wang, H., Lampe, P. D., Prentice, R. L., McIntosh, M. W., Hanash, S. M., Li, C. I. 2010; 70 (21): 8598-8606

The development of an integrated platform to identify breast cancer glycoproteome changes in human serum JOURNAL OF CHROMATOGRAPHY A Zeng, Z., Hincapie, M., Haab, B. B., Hanash, S., Pitteri, S. J., Kluck, S., Hogan, J. M., Kennedy, J., Hancock, W. S. 2010; 1217 (19): 3307-3315

Elafin Is a Biomarker of Graft-Versus-Host Disease of the Skin SCIENCE TRANSLATIONAL MEDICINE paczesny, s., Braun, T. M., Levine, J. E., Hogan, J., Crawford, J., Coffing, B., Olsen, S., Choi, S. W., Wang, H., Faca, V., Pitteri, S., Zhang, Q., Chin, A., Kitko, C., Mineishi, S., Yanik, G., Peres, E., Hanauer, D., Wang, Y., Reddy, P., Hanash, S., Ferrara, J. L. 2010; 2 (13):13ra2

Novel proteins associated with risk for coronary heart disease or stroke among postmenopausal women identified by in-depth plasma proteome profiling. Genome medicine Prentice, R. L., paczesny, s., Aragaki, A., Amon, L. M., Chen, L., Pitteri, S. J., McIntosh, M., Wang, P., Buson Busald, T., Hsia, J., Jackson, R. D., Rossouw, J. E., Manson, J. E., Johnson, K., Eaton, C., Hanash, S. M. 2010; 2 (7): 48

A systems approach to the proteomic identification of novel cancer biomarkers DISEASE MARKERS Pitteri, S., Hanash, S. 2010; 28 (4): 233-239

Integrated Proteomic Analysis of Human Cancer Cells and Plasma from Tumor Bearing Mice for Ovarian Cancer Biomarker Discovery PLOS ONE Pitteri, S. J., JeBailey, L., Faca, V. M., Thorpe, J. D., Silva, M. A., Ireton, R. C., Horton, M. B., Wang, H., Pruitt, L. C., Zhang, Q., Cheng, K. H., Urban, N., Hanash, S. M., Dinulescu, D. M. 2009; 4 (11): e7916

Application of serum proteomics to the Women's Health Initiative conjugated equine estrogens trial reveals a multitude of effects relevant to clinical findings. Genome medicine Katayama, H., paczesny, s., Prentice, R., Aragaki, A., Faca, V. M., Pitteri, S. J., Zhang, Q., Wang, H., Silva, M., Kennedy, J., Rossouw, J., Jackson, R., Hsia, J., Chlebowski, R., Manson, J., Hanash, S. 2009; 1 (4): 47

Postmenopausal estrogen and progestin effects on the serum proteome. Genome medicine Pitteri, S. J., Hanash, S. M., Aragaki, A., Amon, L. M., Chen, L., Busald Buson, T., paczesny, s., Katayama, H., Wang, H., Johnson, M. M., Zhang, Q., McIntosh, M., Wang, P., Kooperberg, C., Rossouw, J. E., Jackson, R. D., Manson, J. E., Hsia, J., Liu, S., Martin, L., Prentice, R. L. 2009; 1 (12): 121

Occurrence of Autoantibodies to Annexin I, 14-3-3 Theta and LAMR1 in Prediagnostic Lung Cancer Sera JOURNAL OF CLINICAL ONCOLOGY Qiu, J., Choi, G., Li, L., Wang, H., Pitteri, S. J., Pereira-Faca, S. R., Krasnoselsky, A. L., Randolph, T. W., Omenn, G. S., Edelstein, C., Barnett, M. J., Thornquist, M. D., Goodman, G. E., Brenner, D. E., Feng, Z., Hanash, S. M. 2008; 26 (31): 5060-5066

Precursor-ion mass re-estimation improves peptide identification on hybrid instruments JOURNAL OF PROTEOME RESEARCH Luethy, R., Kessner, D. E., Katz, J. E., McLean, B., Grothe, R., Kani, K., Faca, V., Pitteri, S., Hanash, S., Agus, D. B., Mallick, P. 2008; 7 (9): 4031-4039

Proteomic Analysis of Ovarian Cancer Cells Reveals Dynamic Processes of Protein Secretion and Shedding of Extra-Cellular Domains PLOS ONE Faca, V. M., Ventura, A. P., Fitzgibbon, M. P., Pereira-Faca, S. R., Pitteri, S. J., Green, A. E., Ireton, R. C., Zhang, Q., Wang, H., O'Briant, K. C., Drescher, C. W., Schummer, M., McIntosh, M. W., Knudsen, B. S., Hanash, S. M. 2008; 3 (6): e2425

Isoform analysis of LC-MS/MS data from multidimensional fractionation of the serum proteome JOURNAL OF PROTEOME RESEARCH Krasnoselsky, A. L., Faca, V. M., Pitteri, S. J., Zhang, Q., Hanash, S. M. 2008; 7 (6): 2546-2552

A mouse to human search for plasma Proteome changes associated with pancreatic tumor development PLOS MEDICINE Faca, V. M., Song, K. S., Wang, H., Zhang, Q., Krasnoselsky, A. L., Newcomb, L. F., Plentz, R. R., Gurumurthy, S., Redston, M. S., Pitteri, S. J., Pereira-Faca, S. R., Ireton, R. C., Katayama, H., Glukhova, V., Phanstiel, D., Brenner, D. E., Anderson, M. A., Misek, D., Scholler, N., Urban, N. D., Barnett, M. J., Edelstein, C., Goodman, G. E., Thornquist, M. D., McIntosh, M. W., DePinho, R. A., Bardeesy, N., Hanash, S. M. 2008; 5 (6): 953-967

Mining the plasma proteome for cancer biomarkers NATURE Hanash, S. M., Pitteri, S. J., Faca, V. M. 2008; 452 (7187): 571-579

Plasma proteome profiling of a mouse model of breast cancer identifies a set of up-regulated proteins in common with human breast cancer cells JOURNAL OF PROTEOME RESEARCH Pitteri, S. J., Faca, V. M., Kelly-Spratt, K. S., Kasarda, A. E., Wang, H., Zhang, Q., Newcomb, L., Krasnoselsky, A., paczesny, s., Choi, G., Fitzgibbon, M., McIntosh, M. W., Kemp, C. J., Hanash, S. M. 2008; 7 (4): 1481-1489

A mouse plasma peptide atlas as a resource for disease proteomics GENOME BIOLOGY Zhang, Q., Menon, R., Deutsch, E. W., Pitteri, S. J., Faca, V. M., Wang, H., Newcomb, L. F., DePinho, R. A., Bardeesy, N., Dinulescu, D., Hung, K. E., Kucherlapati, R., Jacks, T., Politi, K., Aebersold, R., Omenn, G. S., States, D. J., Hanash, S. M. 2008; 9 (6): R93

Proteomic approaches for cancer biomarker discovery in plasma EXPERT REVIEW OF PROTEOMICS Pitteri, S. J., Hanash, S. M. 2007; 4 (5): 589-590

Contribution of protein fractionation to depth of analysis of the serum and plasma proteomes JOURNAL OF PROTEOME RESEARCH Faca, V., Pitteri, S. J., Newcomb, L., Glukhova, V., Phanstiel, D., Krasnoselsky, A., Zhang, Q., Struthers, J., Wang, H., Eng, J., Fitzgibbon, M., McIntosh, M., Hanash, S. 2007; 6 (9): 3558-3565

Ion/molecule reactions of cation radicals formed from protonated polypeptides via gas-phase ion/ion electron transfer JOURNAL OF THE AMERICAN CHEMICAL SOCIETY Xia, Y., Chrisman, P. A., Pitteri, S. J., Erickson, D. E., McLuckey, S. A. 2006; 128 (36): 11792-11798

Parallel ion parking of protein mixtures ANALYTICAL CHEMISTRY Chrisman, P. A., Pitteri, S. J., McLuckey, S. A. 2006; 78 (1): 310-316

Differentiation of aspartic and isoaspartic acids using electron transfer dissociation JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY O'Connor, P. B., Cournoyer, J. J., Pitteri, S. J., Chrisman, P. A., McLuckey, S. A. 2006; 17 (1): 15-19

Charge-State Dependent Dissociation of a Trypsin/Inhibitor Complex via Ion Trap Collisional Activation Int J Mass Spectrom Pitteri SJ, Chrisman PA, Badman ER, McLuckey SA 2006; 253 (3): 147-55

Recent developments in the ion/ion chemistry of high-mass multiply charged ions MASS SPECTROMETRY REVIEWS Pitteri, S. J., McLuckey, S. A. 2005; 24 (6): 931-958

Electron transfer versus proton transfer in gas-phase ion/ion reactions of polyprotonated peptides JOURNAL OF THE AMERICAN CHEMICAL SOCIETY Gunawardena, H. P., He, M., Chrisman, P. A., Pitteri, S. J., Hogan, J. M., Hodges, B. D., McLuckey, S. A. 2005; 127 (36): 12627-12639

Electron-transfer ion/ion reactions of doubly protonated peptides: Effect of elevated bath gas temperature ANALYTICAL CHEMISTRY Pitteri, S. J., Chrisman, P. A., McLuckey, S. A. 2005; 77 (17): 5662-5669

SO2- electron transfer ion/ion reactions with disulfide linked polypeptide ions JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY Chrisman, P. A., Pitteri, S. J., Hogan, J. M., McLuckey, S. A. 2005; 16 (7): 1020-1030

Parallel ion parking: Improving conversion of parents to first-generation products in electron transfer dissociation ANALYTICAL CHEMISTRY Chrisman, P. A., Pitteri, S. J., McLuckey, S. A. 2005; 77 (10): 3411-3414

Electron transfer ion/ion reactions in a three-dimensional quadrupole ion trap: Reactions of doubly and triply protonated peptides with SO2 center dot- ANALYTICAL CHEMISTRY Pitteri, S. J., Chrisman, P. A., Hogan, J. M., McLuckey, S. A. 2005; 77 (6): 1831-1839

Complementary structural information from a tryptic N-linked glycopeptide via electron transfer ion/ion reactions and collision-induced dissociation JOURNAL OF PROTEOME RESEARCH Hogan, J. M., Pitteri, S. J., Chrisman, P. A., McLuckey, S. A. 2005; 4 (2): 628-632

Effects of single amino acid substitution on the collision-induced dissociation of intact protein ions: Turkey ovomucoid third domain JOURNAL OF PROTEOME RESEARCH Newton, K. A., Pitteri, S. J., Laskowski, M., McLuckey, S. A. 2004; 3 (5): 1033-1041

Affecting proton mobility in activated peptide and whole protein ions via lysine guanidination JOURNAL OF PROTEOME RESEARCH Pitteri, S. J., Reid, G. E., McLuckey, S. A. 2004; 3 (1): 46-54

Phosphorylation site identification via ion trap tandem mass spectrometry of whole protein and peptide ions: Bovine alpha-crystallin A chain ANALYTICAL CHEMISTRY Hogan, J. M., Pitteri, S. J., McLuckey, S. A. 2003; 75 (23): 6509-6516

Osmium(IV) Complexes TpOs(X)Cl2 and their Os(III) Counterparts: Oxidizing Compounds with an Unusual Reistance to Ligand Substitution J Chem Soc, Dalton Transactions Bennett BK, Pitteri SJ, Pilobello L, Lovell S, Kaminsky W, Mayer JM 2001: 3489-97

A Chemical Ionization Technique for Measurement of Pernitric Acid in the Upper Troposphere Geophys Res Lett Slusher DL, Pitteri SJ, Haman BJ, Tanner DJ, Huey LG 2001; 28 (20): 3875-78