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Infectious Diseases April 16, 2020

One in five people with COVID-19 are also co-infected with other viruses or bacteria

By Krista Conger

Co-infection with SARS-CoV-2 and other respiratory pathogens is more common than previously expected, according to a Stanford study.

At the end of March, I wrote about a preliminary study conducted by Stanford emergency physician Ian Brown, MD, that indicated that a significant number of people diagnosed with COVID-19 are also simultaneously co-infected with other respiratory viruses, including influenza or rhinovirus.

This is important to know because, as I explained:

The findings challenge the assumption that people are unlikely to have COVID-19 if they have another type of viral respiratory disease. "Currently, if a patient tests positive for a different respiratory virus, we believe that they don't have COVID-19," said Nigam Shah, MBBS, PhD, associate professor of medicine and of biomedical data science at the medical school. "However, given the co-infection rates we've observed in this sample, that is an incorrect assumption."

Now Stanford emergency department physician James Quinn, MD, and resident David Kim, MD, PhD, together with clinical virologist Benjamin Pinsky, MD, PhD, have extended this analysis to include more than 1,200 samples, collected from people from multiple sites in Northern California who were experiencing a cough, fever or other symptoms of a respiratory infection. They published their results yesterday in JAMA.

The take-home message is the same: infection with a common respiratory virus or bacteria doesn't mean the person can't also be infected with SARS-CoV-2, the virus that causes COVID-19. In fact, 7.5% of people who tested positive for the presence of one or more common respiratory pathogens were also infected with SARS-CoV-2. Conversely, 20.7% of people infected with SARS-CoV-2 were also co-infected with one or more common respiratory pathogens.

The authors conclude:

These results suggest higher rates of co-infection between SARS-CoV-2 and other respiratory pathogens than previously reported, with no significant difference in rates of SARS-CoV-2 infection in patients with and without other pathogens. The presence of a non-SARS-CoV-2 pathogen may not provide reassurance that a patient does not also have SARS-CoV-2.

Photo by Bret Kavanaugh

About Stanford Medicine

Stanford Medicine is an integrated academic health system comprising the Stanford School of Medicine and adult and pediatric health care delivery systems. Together, they harness the full potential of biomedicine through collaborative research, education and clinical care for patients. For more information, please visit med.stanford.edu.

Krista-Conger

Science writer

Krista Conger

Senior science writer Krista Conger, PhD ’99, covers cancer, stem cells, dermatology, developmental biology, endocrinology, pathology, hematology, radiation oncology and LGBTQ+ issues for the office. She received her undergraduate degree in biochemistry at the University of California, Berkeley and her PhD in cancer biology from Stanford University. After completing the science writing program at UC Santa Cruz, she joined the Stanford Medicine Office of Communications in 2000. She enjoys distilling complicated scientific topics into engaging prose accessible to the layperson. Over the years, she has had chronicled nascent scientific discoveries from their inception to Food and Drug Administration approval and routine clinical use — documenting the wonder and long arc of medical research. Her writing has repeatedly been recognized with awards from the Counsel for the Advancement and Support of Education and the Association of American Medical Colleges. She is a member of the National Academy of Science Writers and a certified science editor through the Board of Editors in the Life Sciences. In her spare time, she enjoys textile arts, experimenting with new recipes and hiking in beautiful northwestern Montana, where she was raised and now lives.