Datasets

Analysis of Differentiation Protocols Defines a Common Pancreatic Progenitor Molecular Signature and Guides Refinement of Endocrine Differentiation" published at Stem Cell Reports in 2020  More 

Original publication: Wesolowska-Andersen et al., Stem Cell Reports. 2020  https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6962645/

Data is available through the EGA - https://ega-archive.org to request the data please read the data access agreement below and complete the application form. Your application will be considered by the Data Access Committee and when approved EGA will release the data.

Forms should be returned to agloyn@stanford.edu

Study: EGAS00001003513

Dataset: EGAD00001004823 (RNA-seq)

Dataset: EGAD00001004824 (ATAC-seq)

Data Access Committee: EGAC00001000335

Data access agreement for ATAC-seq  

Data access agreement for RNA-seq

Application to access the ATAC-seq data 

Application to access the RNA-seq data 

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INSPIRE consortium  More 

Original publication: Vinuela et al Nature Communications

2020-https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7528108/

Data is available through the EGA https://ega-archive.org to request the data please read the data access agreement below and complete the application form. You application will be considered by the Data Access Committee and when approved EGA will release the data.

Forms should be returned to  InsPIRE@nih.gov

Study: EGAS00001003997

Dataset: EGAD00001006149

Data Access Committee: EGAC000010001390

Application to access the Data

Data access agreement

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Cis-eQTL mapping of human pancreatic islets More 

Original publication: van de Bunt et al., PLoS Genetics, 2015 – https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005694

Data is available through the EGA https://ega-archive.org to request the data please read the data access agreement below and complete the application form. You application will be considered by the Data Access Committee and when approved EGA will release the data.

Forms should be returned to agloyn@stanford.edu

Study: EGAS00001001265

Dataset: EGAD00001001601

Data Access Committee: EGAC00001000335

Application to access the Data

Data access agreement

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Characterization of a human iPSC-derived endocrine pancreas model More 

Original publication: van de Bunt et al., Islets, 2016 – https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987020/

Data is available through the EGA https://ega-archive.org to request the data please read the data access agreement below and complete the application form.   You application will be considered by the Data Access Committee and when approved EGA will release the data.

Forms should be returned to agloyn@stanford.edu

Study: EGAD00001002148

Dataset: EGAD00001001601

Data Access Committee: EGAC00001000335

Application to access the Data

Data access agreement

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Integration of human pancreatic islet genomic data refines regulatory mechanisms at Type 2 Diabetes susceptibility loci - WGBS dataset More 

Original publication: Thurner et al Elife 2018 - https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5828664/

Data is available through the EGA https://ega-archive.org to request the data please read the data access agreement below and complete the application form.   You application will be considered by the Data Access Committee and when approved EGA will release the data.

Forms should be returned to agloyn@stanford.edu

Study:EGAS00001002592

Dataset: EGAD00001003946

Data Access Committee: EGAC00001000335

Application to access the Data

Data access agreement

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Integration of human pancreatic islet genomic data refines regulatory mechanisms at Type 2 Diabetes susceptibility loci – ATAC-seq dataset More 

Original publication: Thurner et al Elife 2018 - https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5828664/

Data is available through the EGA https://ega-archive.org to request the data please read the data access agreement below and complete the application form.   You application will be considered by the Data Access Committee and when approved EGA will release the data.

Forms should be returned to agloyn@stanford.edu

Study:EGAS00001002592

Dataset: EGAD00001003947

Data Access Committee: EGAC00001000335

Application to access the Data

Data access agreement

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Genes associated with pancreas development and function maintain open chromatin in iPSCs generated from human pancreatic beta cells - RNA dataset More 

Original publication: Thurner et al Stem Cell Reports 2017  - https://www-cell-com.stanford.idm.oclc.org/stem-cell-reports/pdf/S2213-6711(17)30427-7.pdf

Data is available through the EGA (link here please - https://ega-archive.org to request the data please read the data access agreement below and complete the application form.   You application will be considered by the Data Access Committee and when approved EGA will release the data.

Forms should be returned to agloyn@stanford.edu

Study:EGAS00001002591

Dataset: EGAD00001003780

Data Access Committee: EGAC00001000335

Application to access the Data

Data access agreement

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Genes associated with pancreas development and function maintain open chromatin in iPSCs generated from human pancreatic beta cells – ATAC-Seq dataset More 

Original publication: Thurner et al Stem Cell Reports 2017 - https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5831005/

Data is available through the EGA https://ega-archive.org to request the data please read the data access agreement below and complete the application form.   You application will be considered by the Data Access Committee and when approved EGA will release the data.

Forms should be returned to agloyn@stanford.edu

Study: EGAS00001002591

Dataset: EGAD00001003759

Data Access Committee: EGAC00001000335

Application to access the Data

Data access agreement

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Understanding human fetal pancreas development using subpopulation sorting and RNA sequencing More 

Original publication: Ramond et al., Development, 2018 https://dev-biologists-org.stanford.idm.oclc.org/content/145/16/dev165480

Data is available through the EGA https://ega-archive.org to request the data please read the data access agreement below and complete the application form.   You application will be considered by the Data Access Committee and when approved EGA will release the data.

Forms should be returned to agloyn@stanford.edu

Study: EGAS00001003127

Dataset: EGAD00001004210

Data Access Committee: EGAC00001001039

Application to access the Data

Data access agreement

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Characterization of a human iPSC-derived islet differentiation model. More 

Original publication: Perez-Alcantara et al., Diabetologia, 2018 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6354904/

Data is available through the EGA https://ega-archive.org to request the data please read the data access agreement below and complete the application form.   You application will be considered by the Data Access Committee and when approved EGA will release the data.

Forms should be returned to agloyn@stanford.edu

Study: EGAS00001002721

Dataset: EGAD00001003807

Data Access Committee: EGAC00001000335

Application to access the Data

Data access agreement

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RNA-seq profiling of NKX6.1 reporter iPSC lines for isolation and analysis of functionally relevant neuronal and pancreas populations. More 

Original publication: Gupta et al., Stem Cell Res. 2018 https://www.sciencedirect.com/science/article/pii/S1873506118301119?via%3Dihub

Data is available through the EGA - https://ega-archive.org to request the data please read the data access agreement below and complete the application form.   You application will be considered by the Data Access Committee and when approved EGA will release the data.

Forms should be returned to agloyn@stanford.edu

Study: EGAS00001002802

Dataset: EGAD00001003911

Data Access Committee: EGAC00001000335

Application to access the Data

Data access agreement

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