Discussing Developmental Data (3D)

Research Talks Thursdays in Dev Bio Library

Date

Presenter

Title

04/02/24 Cecelia Andrews Dynamics and Mechanisms of Bifunctional Transcription Factor Effector Domains
04/02/24 Tee Udomlumleart Chromosomes decompact at cis-regulatory length scales during mitotic chromosome formation
6/1/23 Rayyan Jokhai Investigating the Origins of the Hindbrain In Vivo to Generate Human Hindbrain Neurons In Vitro
05/18/23 Neuza Reis Matias Preventing a promiscuous transcription complex from activating cryptic promoters during cell differentiation
05/04/23 TzuChiao Hung Boundary stacking interactions enable cross-TAD enhancer-promoter communication during limb development
04/20/23 Liesl Strand Unusual development in Auanema rhodensis: meiosis & beyond
04/20/23 Abby Bergman Investigating the function of an endogenous retroelement at the maternal-fetal interface
04/06/23 Siva Vijayakumar Sense, Signal, Repair : Desert Hedgehog signaling coordinates salivary gland regeneration via mesenchyme.
03/09/23 Pam Rios Coronado Coronary artery spatial configurations throughout regeneration and growth
03/09/23 Seung Kim Experimental Science in High Schools and Universities
02/23/23 William Roman Repairing muscle cells without stem cells
02/09/23 John Vaughen Building and remodeling the brain with sphingolipids
01/26/23 Alex Van Elgort Host behavioral control driven by microbial protein-based epigenetic element
01/26/23 Dania Nanes Sarfati  Handling stress with a partner: Photosynthetic efficiency in algal endosymbionts is regulated by host regeneration
01/12/23 Daniel Dan Liu Dissecting stem cell hierarchies in the developing human brain.
12/08/22 Veronica Behrens Powerful new stem cell approaches for studying the genetic basis of human evolution
12/08/22 Raquel Fueyo Molecular mechanisms regulating transposable elements during human preimplantation development
11/10/22 Aleena Patel Enhancer-gene searching within folded chromatin polymers
11/10/22 Megan Agajanian Identifying a possible WNT-TBX3 axis in the mammary gland
10/27/22 Sherry Zheng Arteries give rise to blood-forming stem cells
10/27/22 Devon Harris HOW to switch from mitosis to meiosis
10/13/22 Dan Lysko Unmyelinated neurons can control the myelination of neighboring neurons
09/29/22 Vy Nguyen Identifying RFX6 Function in Human Alpha Cells
09/29/22 Charlotte P. Choi Coordinating the Meiotic Program through Reversible Protein Modifications
06/02/22 Berfin Azizoglu Principles of vascularization in organ size control
05/19/22 Chris Jakobson Molecular mechanisms underlying epigenetic modification of complex traits by Hsp90
05/19/22 Zhiping Feng Targeting colorectal cancer with small-molecule inhibitors of ALDH1B1
05/05/22 Mollie Qian Identifying the function of HNF1α in mature pancreatic β- and α- cells
05/05/22 Seungsoo Kim An ensemble of cooperating transcription factors coordinate face and limb development
04/21/22 Baptiste Roelens Protein phosphatase 4 regulates the localization of Polo-like Kinase 2 during C. elegans meiosis
04/21/22 Lexi Bailey The RNA-binding protein YTHDC2 is required at multiple stages of germ cell differentiation
04/07/22 Alyssa Yoxsimer What causes stickleback pebble disease?
04/07/22 Sahin Naqvi Quantifying transcription factor dosage effects reveals regulatory bottlenecks underlying craniofacial variation
03/10/22 John Vaughen Glial control of sphingolipid metabolism sculpts diurnal remodeling of sleep circuitry
03/10/22 Ayelet Voskoboynik Stem cell competition in a chimeric colonial chordate and its effect on natural selection
02/24/22 Harini Iyer A lysosomal regulatory circuit essential for microglia development
02/24/22 Hannah Rosenblatt Investigating redox signaling capacity in regenerative vs. non-regenerative species
02/10/22 Sedona Murphy Rethinking the relationship between Polycomb-mediated genome organization and repression
02/10/22 Sherry Zheng Do arteries give rise to blood in vivo?
01/27/22 Shady Saad Understanding the quality control of prion-like polyQ proteins
01/27/22 Qianqian Wang Dispatched uses Na+ flux to power the release of lipid-modified Hedgehog
12/09/21 Vy Nguyen Identifying RFX6 function in human alpha cells
12/09/21 Dania Sarfati Symbiotic acoels: handling whole-body regeneration with a partner
11/11/21 Peng Wu Growth Factor Requirements of Patient-Derived Hepatoblastoma Tumoroids
11/11/21 Gabe Amador Scheduling of stomatal differentiation by cell size
10/28/21 Steven Swick HIPK4: An essential regulator of spermiogenesis and a target for male contraception
10/28/21 C Dundes A New Model: Is the brain formed from two separate cellular origins?
10/28/21 Steven Swick HIPK4: An essential regulator of spermiogenesis and a target for male contraception
10/14/21 Lorenzo Gallicchio Sub-Nuclear Compartmentalization of RNA during Drosophila Spermatogenesis
10/14/21 Vivek Bajpai A Genome-Wide Screen Uncovers Novel Genetic Determinants of Human Pigmentation
9/30/21 Kei Yamaya Uncovering hidden roles of RAD-54 proteins in meiosis
9/30/21 Aleena Patel Developmental gene regulation: from signals to genome organization
05/20/21 Thomas Lozanoski Screening the human proteome for prions
05/20/21 Abby Sarkar Intermittent Fasting Induces Rapid Hepatocyte Proliferation
05/06/21 Tonia Hafner What happens to the genome in the absence of Cohesin?
04/22/21 John Vaughen Cell-type Specificity in Brain Lipid Metabolism: Glial GBA Regulates Neural Proteostasis
04/22/21 Deborah Tsao Developing novel assays to study insulin signaling and resistance in Drosophila
04/08/21 Sahin Naqvi Shared heritability of human face and brain shape
04/08/21 Kyle Loh Human artery and vein cells: development and infection by Risk Group 4 viruses
03/11/21 Margot Smit Plant patterning: Unraveling the timing of stomatal development
03/11/21 Daniel Liu Purification and characterization of neural stem and progenitor cells from the developing human brain
02/25/21 Sai Gourisanka Defining a synapse-to-nucleus pathway regulating the neuron-specific chromatin remodeler BAF
02/25/21 Claudia Vásquez What makes for a good spot for a cell to integrate and grow in a tissue?
02/11/21 DB Group Activity To generate a short video clip welcoming virtual visitors to the department! We will use this as part of an effort to give prospective graduate students a sense for who we are as a department
02/11/21 Amy Herbert Sea robins as a model for evolutionary trait gain in vertebrates
01/28/21 Ana Sousa Crimic: a new strategy to generate humanized zebrafish disease models
01/28/21 Shady Saad FoxP2 phase separation during embryonic development: a possible role in the fate of neural crest differentiation
12/10/20 Pengyang Li Single-cell analysis of Schistosoma mansoni reveals a conserved genetic program controlling germline stem cell fate
12/10/20 Trisha Chong How localization of a phosphatase controls multiple phenotypes in Caulobacter
11/12/20 Bhagyesh Sarode A transposon-based approach for optogenetic engineering
11/12/20 Cati Logan An adipogenesis phenotype caused by a deletion in a Wnt1/Wnt10b injury-responsive enhancer
10/29/20 Massimo Nichane Multipotent embryonic lung progenitors for lung repair
10/29/20 Preksha Bhagchandani Promoting Immunotolerance of Islet Transplant using Mixed Chimerism
10/15/21 Jaaved Mohammed Understanding the role of enhancers in hominid craniofacial development and evolution
10/15/21 Cameron Berry The Septate Junction is required in somatic cyst cells both for the survival of transit-amplifying germ cells and their differentiation into spermatocytes
10/1/21  Minhee Park Understanding the molecular mechanisms of epigenetic memory
10/1/21 Kei Yamaya Meiotic Chromosome Organization and Homolog Pairing

4/30/2020

Alyssa Benjamin

(Kingsley Lab)

Exploring the impacts of DNA fragility and mutation bias on repeated adaptive evolution in sticklebacks

4/30/2020

Paul Bump

(Lowe Lab)

The Two-Body Problem: An investigation of development in adult and larval body plans of the indirect developing hemichordate Schizocardium californicum

 

4/16/2020

Courtney Stockman

(Nusse & Desai Labs)

Wnt signaling in the distal lung

4/16/2020

Paola Moreno-Roman

(O’Brien Lab)

Septate junctions coordinate epithelial integration with polarized growth of stem cell progeny during midgut turnover

4/2/2020

Chris Jakobson

(Jarosz Lab)

Epigenetic modification of a natural genotype-to-phenotype map by Hsp90

4/2/2020

Hosu Sin

(Fuller Lab)

Cilium formation is required for male germ cell progression

2/20/2020

Edward de Koning

(Shapiro Lab)

Biogenesis of polyhydroxybutyrate granules in Caulobacter: an example of differentiating subdomains in the bacterial cytoplasm

2/20/2020

Yan Gong

(Bergmann Lab)

Functional analysis of polarity protein dynamics in the Arabidopsis stomatal linage

2/6/2020

Julia Wucherpfennig

(Kingsley Lab)

How does nature evolve more stickles on sticklebacks?

2/6/2020

Daniel Lysko (Talbot Lab)

How can one gene direct multiple myelin programs?

1/23/2020

Neuza Reis Matias

(Fuller Lab)

Calming down promiscuous promoters

1/23/2020

Sahin Naqvi

(Wysocka & Pritchard Lab)

Genetic and regulatory basis of variation in human facial shape

12/12/2019

Jose Aguilar Rodriguez

(Jarosz & Petrov Labs)

Charting empirical genotype-phenotype maps

12/12/2019

Philippe Mourrain

(Mourrain Lab)

Fluorescent polysomnography columns: towards a cellular understanding of sleep

11/14/2019

Charles Chang

(Kim Lab)

Advancing Islet Transplantation Through Bone Marrow Chimerism

11/14/2019

Samuel Bray

(Wang Lab)

Behavioral regeneration in planaria

10/31/2019

Chris Weber

(Crabtree Lab)

mSWI/SNF facilitates polycomb-mediated repression through distant PRC1 opposition

10/31/2019

Carolyn Dundes

(Loh Lab)

A new model: Is the brain formed from two independent cellular origins?

10/17/2019

Antoine Zalc

(Wysocka Lab)

Functional characterization of cranial neural crest progenitor stem cells

10/17/2019

Sedona Murphy

(Boettiger Lab)

Does size matter? Understanding polycomb-mediated silencing at Hox loci

10/3/2019

Chantal Akerib

(Villeneuve Lab)

Green Eggs and Him 2.0: a Screen for Meiotic Mutants in C. elegans

10/3/2019

Theo Susanto

(Barna Lab)

Rapid enrichment of ribosome-associated proteins across cell types, tissues, and species

6/13/2019

Keren Lasker (Shapiro Lab)

Towards engineering a membranelles organelle

5/30/2019

Olena Zhulyn 
(Barna Lab)

Rapid remodeling of the translatome underlies wound healing and regeneration

5/30/2019

Yinhua (Una) Jin 
(Nusse Lab)

Tbx3 is a key regulator of hepatocyte progenitor cell ploidy

5/16/2019

Vivek Bajpai 
(Wysocka Lab)

Investigating molecular determinants of human pigmentation variation

5/2/2019

Shady Saad

(Jarosz & Wysocka Labs)

FoxP2 phase separation during embryonic development: a possible role in the fate of neural crest differentiation

5/2/2019

Emily Kolenbrander Ho (Sterns Lab)

Regulation of Hedgehog signaling-dependent proliferation by dynamic primary cilia

4/18/2019

Sangbin Park 
(Kim Lab)

Developing Drosophila genetic screen platforms for protein kinase regulators

4/18/2019

Johannes Birgmeier

(Bejerano Lab)

Computational approaches to accelerate diagnosis of genetic diseases

4/4/2019

Rachel Grant 
(Kingsley Lab)

Neurexophilin in human brain evolution?

4/4/2019

Stefan Heller 
(Heller Lab)

The chicken inner ear as a model to study cochlear hair cell regeneration

3/21/2019

Wan-Jin Lu

(Beachy Lab)

Hedgehog signaling in regenerating good taste

3/21/2019

Li Li

(Wang Lab)

A mitochondrial membrane-spanning machinery is a drug target for healthy and unhealthy aging

3/7/2019

Tonia Hafner

(Boettiger Lab)

Genome structure perspective on gene regulation

3/7/2019

Leslie Koyama

(O’Brien Lab)

Bellymount: a novel method for longitudinal, intravital imaging of abdominal organs in adult Drosophila

2/21/2019

Dan Lysko

(Talbot Lab)

Regulation of oligodendrocyte differentiation and migration in the CNS

2/7/2019

Kyle Loh 
(Loh Lab)

Bloody beginnings: reconstituting the development of blood stem cells from pluripotent cells

1/24/2019

Nelson Hall

(Wang Lab)

Towards planarian transgenics: nanostraws, luminescence, and what happens when you can't inject into an oocyte

1/24/2019

Albert Tsai

(Bendall Lab)

Single cell morphometry in a practical, automatable mass cytometry platform for leukemia and lymphoma diagnosis

11/29/2018

WC Peng

(Nusse Lab)

Tissue repair signals for mouse primary hepatocyte culture

11/29/2018

Paulina Ciepla

(Chen Lab)

Studies of RNA defects in a zebrafish model of spinal muscular atrophy

11/15/2018

Robert Whitener

(Kim Lab)

Bringing a new animal model to Stanford: using the pig to study islet cell development

11/15/2018

Susanna Brantley

(Fuller Lab)

Somatic support cells regulate germ cell survival through the Baz/aPKC/Par6 complex

11/1/2018

Alan Itakura

(Jarosz Lab)

Widespread prion-based control of a developmental decision in Saccharomyces cerevisiae

10/18/2018

Kathrin Leppek

(Barna Lab)

5’ UTR RNA-ribosome interactions specify translation in embryonic development

10/18/2018

Rachel Greenberg

(Wysocka Lab)

A novel selective role for a histone variant subtype in a human craniofacial disorder

10/4/2018

Heidi Chen

(Kingsley & Bejerano Labs)

Interrogating the genomic basis of convergent fin evolution in percomorph fish

10/4/2018

Alex Woglar

(Villeneuve Lab)

How do chromosome structures orchestrate meiotic recombination?

5/31/2018

Seung Kim 
(Kim Lab)

Innovating secondary school and college science instruction

5/31/2018

Nian Liu 
(Wysocka Lab)

Cross-talk between the human genome and transposable elements

5/17/2018

Bo Yoo 
(Bejerano Lab)

Prioritizing novel mendelian disease candidate genes

5/3/2018

Chloe Girard 
(Villeneuve Lab)

The balancing act of meiosis: how to promote and limit crossover formation

4/19/2018

Alec Tarashansky 
(Wang Lab)

Reading between the strokes of single cell RNA-seq data

4/19/2018

Ana Sousa 
(Talbot Lab)

Forward and reverse genetic approaches identify new regulators of CNS myelination

3/22/2018

Aaron Crapster 
(Chen Lab)

HIPK4 regulates spermatogenesis and is essential for male fertility in the mouse

3/22/2018

Wendy Wenderski 
(Crabtree Lab)

Mutations in the neuron-specific chromatin remodeling subunit BAF53b cause Mendelian recessive autism

3/8/2018

Erin Sanders 
(O’Brien Lab)

Adaptable differentiation kinetics in the Drosophila adult midgut

3/8/2018

Yinhua (Una) Jin 
(Nusse Lab)

The role of Tbx3 in hepatocyte progenitor cells

2/22/2018

Massimo Nichane 
(Loh Lab)

Isolation and 3D expansion of multipotent Sox9+ mouse lung progenitors that can generate both airway and alveolar cell types

2/22/2018

Neuza Matias  
(Fuller Lab)

Solving the spermatocyte transcription regulation puzzle

2/8/2018

Ian Heller 
(Kingsley Lab)

Regulation of Bmp5 after injury

2/8/2018

Yiwen Chen 
(Jarosz Lab)

Quality control and aggregation in an aging vertebrate proteome

1/25/2018

Agnieszka Czechowicz
(Czechowicz Lab) 

Exploitation of hematopoietic stem cells:  important cellular therapeutics and probes of regenerative medicine

1/11/2018

Yan Hang 
(Kim Lab)

A circulating peptide hormone regulating insulin secretion after starvation

1/11/2018

Albert Hinman (Villeneuve Lab)

Why breaking your DNA is actually a good thing

11/30/2017

Kelsey Roberts 
(Beachy Lab)

Hedgehog pathway regulation by Patched

11/30/2017

Lu Sun 
(Barres Lab)

Identification of a novel inhibitory pathway on CNS myelination

11/16/2017

Antoine Zalc 
(Wysocka Lab)

Study of FoxP2 function during mammal development: a role for the neural crest during language formation

11/16/2017

Naomi Genuth 
(Barna Lab)

Ribosome heterogeneity and specialization during cellular differentiation

11/2/2017

Karen Mruk 
(Chen Lab)

Shining light on zebrafishlLarvae: chemical and genetic tools for CNS studies

10/19/2017

Susanna Brantley (Fuller Lab)

Somatic cells regulate germ cell survival through the Baz/aPKC/Par-6 complex in the Drosophila testis

10/19/2017

Xiaofeng Zhou 
(Shapiro Lab)

DNA-facilitated proteolysis of a cell cycle-regulated DNA methyltransferase in Caulobacter

10/5/2017

Zach Harvey 
(Jarosz Lab)

A prion that mediates meiotic inheritance of activated chromatin states

10/5/2017

Teni Anbarchian 
(Nusse Lab)

T-box3 controls hepatocyte ploidy in liver development