People
Principal Investigator and Director
Dr. Chang is a physician scientist who has pioneered studies of the noncoding genome. He is interested in how the activities of hundreds or even thousands of genes (gene parties) are coordinated to achieve biological meaning. His team will focus on studies of lncRNA-genome interaction and clinical regulome analyses. Lab Website.
Co-Principal Investigators
Dr. Curtis pursues systems biology and computational approaches to establish a quantitative and mechanistic understanding of cancer progression. Her research has helped to redefine the molecular map of breast cancer and has led to new paradigms in understanding how human tumors progress. Her team will focus on characterizing regulatory programs in cancer and inferring tumor evolutionary dynamics. Lab Website.
Dr. Greenleaf is building new tools to leverage the power of high-throughput sequencing and cutting-edge microscopies, and bringing these new technologies to bear against basic biological questions of genomic and epigenomic variation. His group will focus on methods development components of the project, including transposase-based accessible chromatin methods, and higher-order structure determination. Lab Website.
Dr. Snyder is a worldwide leader in applying omics approaches of genome sequencing, transcriptomics proteomics, metabolomics, DNA methylation and microbiome assays to the analysis of human disease. Dr. Snyder will coordinate the activities of the DNA methylation project and work closely with Drs. Greenleaf and Chang on the mapping of regulation information in personal genomes. Lab Website.
Dr. Urban is investigating the molecular effects of large genome variants during neuronal development using iPSC model systems and the study of the nature and effects of somatic genome variation in the brain using tissue culture models and primary tissue samples. Dr. Urban will focus on coordinating whole-genome sequence analyses as well as the development of the allele-specific methylome sequencing technology. Lab Website.
Dr. Wong’s current interest centers on the application of statistics to problems arising from biology, in particular questions concerning gene regulation and signal transduction. The Wong Lab will focus on computational analysis of personal regulome data. Lab Website.
Postdocs
Hanmin Guo | Urban and Wong Labs
Brian Johnson | Snyder Lab
Andrew Koh | Crabtree Lab
Sandy Klemm | Greenleaf Lab
Yang Li | Pritchard Lab
Shin Lin | Snyder Lab
Georgi Marinov | Greenleaf Lab
Qiao Liu | Wong Lab
Samuel Lancaster | Snyder Lab
Sai Zhang | Snyder Lab
Pingping Qu | Urban Lab
Bo Zhou | Urban Lab
Morteza Roodgar | Snyder Lab
Shannon White | Snyder Lab
Yizhou Zhu | Snyder Lab
Wanwen Zeng | Wong Lab
Reenal Pattni | Urban Lab
Graduate Students
Michaela Hinks | Greenleaf Lab
Benjamin Doughty | Greenleaf Lab
Julia Schaepe | Greenleaf Lab
Betty Liu | Greenleaf Lab
Instructors
Hang Xu | Curtis Lab
Jose Seoane | Curtis Lab
Collaborators
Gerald Crabtree
Pathology and Developmental Biology, Stanford University
Paul Khavari
Dermatology, Stanford University
Youn Kim
Dermatology, Stanford University
Anshul Kundaje
Genetics and Computer Science, Stanford University
Calvin Kuo
Medicine (Hematology), Stanford University
Liqun Luo
Biology, Stanford University
Emmanuel Mignot
Psychiatry, Stanford University
Dana Pe'er
Biological Sciences, Columbia University
Jonathan Pritchard
Genetics and Biology, Stanford University
Lihua Jiang
Genetics and Biology, Stanford University