Biomedical Informatics Shared Resource
About the Biomedical Informatics Shared Resource
Develop and provide the Stanford Cancer Institute Research Database (SCIRDB), integrating many data resources such as: EPIC; STRIDE; OnCore; Stanford Cancer Registry; Social Security Death Index; specialized databases in surgical pathology, radiation oncology, medication, and tissue bank.
Build cohorts using diagnoses, ICD-9/10 or ICD-O codes, and CPT billing codes.
Perform complex searches involving dictations and other notes, pathology reports, and specimen status (via Stanford Tissue bank).
Provide a data science platform to integrate molecular/clinical data and bioinformatics pipelines with analysis tools based on R and Shiny.
Curation of existing data or add study-specific information by integrating cohort data with REDCap.
Design, build, and support diesease-specific databases: Bladder-Kidney-Testicular; Bone Marrow Transplant; Cutaneous Lymphoma; Lymphoma; Neuroendocrine.
Coordinate activities with the Biostatistics Shared Resource.