Beta version of SABER+. You need java and R installed. Please let us know if you have any problems running the program, or if you have ideas to make the program more user-friendly!
This is the first version of SABER. The package is written in R, and was tested under a Linux system. It has not been thoroughly tested under other systems.
Download the package
For now, you can download the package here (590KB).
Hardware and software pre-requisites
To installSABER, run command line (from the parent directory):
R CMD INSTALL SABER
On Mac OSX, you need XCode 2.4 or newer.
On some UNIX machines, you may want to try
R CMD INSTALL --configure-args=--with-lapack=/usr/lib/liblapack.so SABER
A tutorial for basic functionalities is provided via a vignette in R. A pdf of the tutorial is in "HowTo.pdf." After you have installed SABER, start R, and type the following lines to get started:
library(SABER) #load the library
vignette(“HowTo”) #view the vignette
? Genome # see the genome help page
example(Genome) #run the examples at the bottom of the ‘Genome’ help page