First Annual Parallel Sequencing Genomics Meeting: Implementation and Computation for the Next Era of Genomics
In this new era of genomics resulting from the development of next generation sequencing, there are new issues in regards to applying these powerful technologies to basic and clinical research problems. These technologies introduce a new level of data complexity and depth which go beyond the level of data manipulation for all traditional sequencing technologies and microarray systems. As result, the genomics community needs new solutions to facilitate the analysis of these genomic data sets which will ultimately lead to major new discoveries.
Sponsored by:
Stanford Genome Technology Center
Clinical Cancer Genomics Group
Stanford University
Illumina
Place:
Stanford Genome Technology Center855 California Avenue
Palo Alto, CA 94034
Maps/Directions
Date:
Tuesday, November 6th, 2007
Time:
12 -5 pmSpeakers (tentative):
- Dr. Gary Schroth (Illumina)
- Dr. Jay Shendure (Dept. of Genome Sciences, University of Washington)
- Dr. Brian O’Connor (Dept. of Human Genetics UCLA)
- Dr. Hanlee Ji (Dept. of Medicine, Stanford University School of Medicine)
Lunch is included.
RSVP and Inquiries by November 2nd, 2007:
Hanlee Ji (genomics_ji at stanford.edu);
650-796-7999
Topics
- LIMs development
- Alignment and mismatch analysis
- Data management issues - storage and archive
- Improving sequencing call based on depth - signal processing issues
- New applications in genome analysis
- Brainstorming of a west-coast centric post-genome multi-institutional project for creating standards for the parallel sequencing community
Schedule (tentative):
Lunch:
12 – 1 pmWelcome and Introduction:
1 pm: Hanlee Ji
Parallel Sequencing Technology and Its Application – New Developments in Genomic Applications and Computational Analysis
1:05 pm – 1:45 pm: Dr. Gary Schroth145 pm – 2 pm: Discussion
Large Scale Resequencing
2 pm – 2:40 pm: Dr. Jay Shendure2:40 pm – 2:55 pm: Discussion
Break
2:55 pm -3:05 pm
Bioinformatics and Computational Developments for Parallel Sequencing
3:05 pm – 3:45 pm: Dr. Brian O’Connor and UCLA group
3:45 pm – 4 pm: Discussion
Common Standards for the Genomics Parallel Sequencing Community – Open Discussion and Planning for the Next Meeting:
Topics: 4 pm – 5 pm
