Genome Technology Center

Ronald W. Davis: Selected Publications & Patents

Patents & Technology Transfer

Issued Patents

  1. Methods and apparatus for magnetic separation of cells.
    Davis, RW., Jeffrey, SS., Mindrinos, MN., Pease, RF., Powell, AA., Hajhossein,Talasaz, A. (2011). US Patent 8,071,395 [USPTO]
  2. Precircle probe nucleic acid amplification methods.
    Willis, TD. Hardenbol, P. Jain, M. Stolc, V. Ronaghi, M. Davis, RW . (2011). US Patent 7,993,880 [USPTO]
  3. Charge perturbation detection system for DNA and other molecules.
    Pourmand, N. Karhanek, M. Davis, RW. (2011). US Patent 8,012,75 [USPTO]
  4. Rapid, informative diagnostic assay for influenza viruses including H5N1.
    Pourmand, N., Diamond, L., Kumm, J., Davis, RW. (2011). US Patent 7,989,185 [USPTO]
  5. Methods and compositions for use in analyte detection using proximity probes.
    Fredriksson, S., Davis, RW. (2011). US Patent 7,914,987. [USPTO]
  6. Method to produce single stranded DNA of defined length and sequence and DNA probes produced thereby.
    Mindrinos, M., Krishnakumar, S., Davis, RW. (2011). US Patent 7,897,747. [USPTO]
  7. Multiplexed assay and probes for identification of HPV types.
    Pourmand, N., Gharizadeh, B., Davis, RW. (2011). US Patent 7,875,428. [USPTO]
  8. Charge perturbation detection system for DNA and other molecules.
    Pourmand, N., Davis, RW., Karhanek, M. (2010). US Patent 7,785,785. [USPTO]
  9. Method for detecting and amplifying target DNA.
    Willis, TD., Hardenbol, P., Jain, M., Stolc, V., Davis, RW. (2010). US Patent 7,700,323. [USPTO]
  10. Renaturation, reassociation, association and hybridization of nucleic acid molecules.
    Namsaraev, E., Davis, RW., Karlin-Neumann, G. (2009). US Patent 7,482,125. [USPTO]
  11. DNA fingerprinting using a branch migration assay.
    Pourmand, N., Davis, RW., Wang, SX. (2009). US Patent 7,501,253. [USPTO]
  12. DNA fingerprinting using a branch migration assay.
    Pourmand, N., Davis, RW., Wang, SX. (2007). US Patent 7,238,486. [USPTO]
  13. Renaturation, reassociation, association and hybridization of nucleic acid molecules.
    Namsaraev, E., Davis, RW., Karlin-Neumann, G. (2006). US Patent 7,129,044. [USPTO]
  14. Direct multiplex characterization of genomic DNA.
    Willis, T.D., Hardenbol, P., Jain, M., Stolc, V., Ronaghi, M., Davis, R.W. (2005). United States Patent 6,858,412. [USPTO]
  15. Dimeric fluorescent polypeptides.
    Davis, R.W. Vaillancourt, P. (2005). US Patent US Patent 6,936,428. [USPTO]
  16. Identification of drugs and drug targets by detection of the stress response.
    Davis, R.W., Giaever, G. (2004). United States Patent 6,743,583. [USPTO]
  17. Polypeptides from Chlamydia pneumoniae and their use in the diagnosis, prevention and treatment of disease.
    Stephens, R.S., Mitchell, W., Kalman, S.S., Davis, R.W. (2004). US Patent 6,822,071. [USPTO]
  18. Selecting tag nucleic acids.
    Morris, M.S., Shoemaker, D.D., Davis, R.W. Mittmann, M.P. (2002). US Patent 6,458,530. [USPTO]
  19. Recombinant mycobacteria.
    Bloom, B.R., Davis, R.W., Jacobs, Jr., R., Young, R.A., Husson, R.N. (2002). US Patent 6,372,478. [USPTO]
  20. Recombinant mycobacterial vaccine.
    Bloom, B.R., Davis, R.W. Jacobs, Jr., W.R. Young, R.A. Husson, R.N. (2001). US Patent 6,270,776. [USPTO]
  21. Highly parallel and sensitive method for identifying drugs and drug targets.
    Davis, R.W., Giaever, G.N., Shoemaker D., (2000). United States Patent 6,046,002. [USPTO]
  22. Mycobacteriophages and uses thereof.
    Bloom, B.R., Davis; R.W., Jacobs, Jr., W.R., Young, R.A., Husson, R.N. (1999). US Patent 5,968,733. [USPTO]
  23. Cleaved amplified RFLP detection methods.
    Ausubel, F., Davis, R.W., Preuss, D. (1999). US Patent, 6,004,783. [USPTO]
  24. Recombinant mycobacteria.
    Bloom, B.R. Jacobs, Jr., W.R. Davis, R.W. Young, R.A. Husson, R.N. (1998). US Patent 5,854,055. [USPTO]
  25. Recombinant mycobacterial vaccine.
    Bloom, BR., Davis, RW., Jacobs, Jr., WR., Young, RA., Husson, RN. (1996). US Patent 5,504,005. [USPTO]
  26. Electrophoresis using contour-clamped electric fields.
    Chu, G., Vollrath, D., Davis, R., (1996). US Patent 5,549,796. [USPTO]
  27. Method for detecting a nucleotide at a specific location within a nucleic acid using exonuclease activity.
    Davis, R.W., Myles, A. (1995). US Patent 5,391,480. [USPTO]
  28. Electrophoresis using contour-clamped electric fields.
    Chu, G., Vollrath, D., Davis, RW. (1992). US Patent 5,165,898. [USPTO]
  29. Use of the GAL1 yeast promoter.
    Botstein, D., Davis, RW., Fink, GR., Taunton-Rigby, A., Knowlton, RG., Mao, J., Moir, DT., Goff, CG. (1992). US Patent 5,139,936. [USPTO]
  30. Encoding antigens of M. Leprae.
    Young, RA., Bloom, BR., Davis, RW. (1990). US Patent 4,906,742. [USPTO]
  31. System for efficient isolation of genes using probes.
    Davis, RW., Young, RA. (1988). US Patent 4,788,135. [USPTO]
  32. Rennin-containing disrupted yeast cells used in cheese manufacture.
    Botstein, D., Fink, GR., Davis, RW. (1987). US Patent 4,695,470. [USPTO]
  33. GAL1 yeast promoter linked to non galactokinase gene.
    Botstein, D., Davis, RW., Fink, DR., Taunton-Rigby, A., Knowlton, RG., Mao, J.,Moir, DT., Goff, CG. (1987). US Patent 4,661,454. [USPTO]

Published/Pending/Patent Applications

  1. Rapid, Informative Diagnostic Assay For Influenza Viruses Including H5N1.
    Davis, RW. Diamond, L. Kumm, J. Pourmand, N. (2009). [Stanford Reference S06-155], [USPTO]
  2. Coaxial Nanoneedle.
    Esfandyarpour, H. Parizi, K.B. Davis, R.W. (2008). [Stanford Docket S06-072]
  3. Activated Nanopores for Biochemical Analysis.
    Davis, RW. Ronaghi, M. Talasaz, A. H. (2007). [Stanford Docket S03-098]
  4. Needle-Sequencing: Novel Ultra Sensitive Gene Sequencing Platform.
    Esfandyarpour, H. Davis, R.W. (2006). [Stanford Docket S06-080]
  5. Clinical and Genomic/Proteomic Data Integration and QA/QC Analysis System.
    Davis, RW. Ji, H. Kumm, J. (2004). [Stanford Reference S04-255].
  6. Charge Alternation DNA Detection System.
    Pourmand, N., Karhanek, M., Davis, R.W. U.S. PTO No. 60/627,192. Filed Nov. 12, 2004 [Stanford Docket S04-291]
  7. Reciprocal Hemizygous Scanning (RHS).
    Davis, R.W., McCusker, J., Steinmetz L.M., (2001). [Stanford DocketS 01-117]
  8. Concatenated Oligonucleotide Primer Synthesis for PCR.
    Davis, R.W., Hardenbol P., Willis T. (2000). [Stanford Docket S00-044]

 

Publications

  1. The Automated Cell: Compound and Environment Screening System (ACCESS) for Chemogenomic Screening.
    Proctor M, Urbanus ML, Fung EL, Jaramillo DF, Davis RW, Nislow C, Giaever G. Methods Mol Biol. 2011;759:239-69. [PubMed]
  2. Human transcriptome array for high-throughput clinical studies.
    Xu W, Seok J, Mindrinos MN, Schweitzer AC, Jiang H, Wilhelmy J, Clark TA, Kapur K, Xing Y, Faham M, Storey JD, Moldawer LL, Maier RV, Tompkins RG, Wong WH, Davis RW, Xiao W. Proc Natl Acad Sci U S A. 2011;108(9):3707-12. PMCID: 3048146. [PubMed]
  3. Identification of rare DNA variants in mitochondrial disorders with improved array-based sequencing.
    Wang W, Shen P, Thiyagarajan S, Lin S, Palm C, Horvath R, Klopstock T, Cutler D, Pique L, Schrijver I, Davis RW, Mindrinos M, Speed TP, Scharfe C.Nucleic Acids Res. 2011;39(1):44-58. PMCID: 3017602. [PubMed]
  4. High-quality DNA sequence capture of 524 disease candidate genes.
    Shen P, Wang W, Krishnakumar S, Palm C, Chi AK, Enns GM, Davis RW, Speed TP, Mindrinos MN, Scharfe C. Proc Natl Acad Sci U S A. 2011;108(16):6549-54. PMCID: 3080966. [PubMed]
  5. Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6.
    Lardenois A, Liu Y, Walther T, Chalmel F, Evrard B, Granovskaia M, Chu A, Davis RW, Steinmetz LM, Primig M. Proc Natl Acad Sci U S A. 2011;108(3):1058-63. PMCID: 3024698. [PubMed]
  6. Analysis of factorial time-course microarrays with application to a clinical study of burn injury.
    Zhou B, Xu W, Herndon D, Tompkins R, Davis R, Xiao W, Wong WH, Toner M, Warren HS, Schoenfeld DA, Rahme L, McDonald-Smith GP, Hayden D, Mason P, Fagan S, Yu YM, Cobb JP, Remick DG, Mannick JA, Lederer JA, Gamelli RL, Silver GM, West MA, Shapiro MB, Smith R, Camp DG, 2nd, Qian W, Storey J, Mindrinos M, Tibshirani R, Lowry S, Calvano S, Chaudry I, Cohen M, Moore EE, Johnson J, Moldawer LL, Baker HV, Efron PA, Balis UG, Billiar TR, Ochoa JB, Sperry JL, Miller-Graziano CL, De AK, Bankey PE, Finnerty CC, Jeschke MG, Minei JP, Arnoldo BD, Hunt JL, Horton J, Brownstein B, Freeman B, Maier RV, Nathens AB, Cuschieri J, Gibran N, Klein M, O'Keefe G. Proc Natl Acad Sci U S A. 2010;107(22):9923-8. PMCID: 2890487. [PubMed]
  7. Predicting patient survival from longitudinal gene expression.
    Zhang Y, Tibshirani RJ, Davis RW. Stat Appl Genet Mol Biol. 2010;9(1):Article41. PMCID: 3004784. [PubMed]
  8. High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets.
    Wang C, Sanders CM, Yang Q, Schroeder HW, Jr., Wang E, Babrzadeh F, Gharizadeh B, Myers RM, Hudson JR, Jr., Davis RW, Han J. Proc Natl Acad Sci U S A. 2010;107(4):1518-23. PMCID: 2824416. [PubMed]
  9. Knowledge-based analysis of microarrays for the discovery of transcriptional regulation relationships.
    Seok J, Kaushal A, Davis RW, Xiao W. BMC Bioinformatics. 2010;11 Suppl 1:S8. PMCID: 3009543. [PubMed]
  10. A universal TagModule collection for parallel genetic analysis of microorganisms.
    Oh J, Fung E, Price MN, Dehal PS, Davis RW, Giaever G, Nislow C, Arkin AP, Deutschbauer A. Nucleic Acids Res. 2010;38(14):e146. PMCID: 2919733. [PubMed]
  11. Gene annotation and drug target discovery in Candida albicans with a tagged transposon mutant collection.
    Oh J, Fung E, Schlecht U, Davis RW, Giaever G, St Onge RP, Deutschbauer A, Nislow C. PLoS Pathog. 2010;6(10). PMCID: 2951378. [PubMed]
  12. Sensitive giant magnetoresistive-based immunoassay for multiplex mycotoxin detection.
    Mak AC, Osterfeld SJ, Yu H, Wang SX, Davis RW, Jejelowo OA, Pourmand N. Biosens Bioelectron. 2010;25(7):1635-9. PMCID: 2947153. [PubMed]
  13. A molecular inversion probe assay for detecting alternative splicing.
    Lin S, Wang W, Palm C, Davis RW, Juneau K. BMC Genomics. 2010;11:712. PMCID: 3022918. [PubMed]
  14. Clinical microfluidics for neutrophil genomics and proteomics.
    Kotz KT, Xiao W, Miller-Graziano C, Qian WJ, Russom A, Warner EA, Moldawer LL, De A, Bankey PE, Petritis BO, Camp DG, 2nd, Rosenbach AE, Goverman J, Fagan SP, Brownstein BH, Irimia D, Xu W, Wilhelmy J, Mindrinos MN, Smith RD, Davis RW, Tompkins RG, Toner M. Nat Med. 2010;16(9):1042-7. [PubMed]
  15. Gas-phase cleavage and dephosphorylation of universal linker-bound oligodeoxynucleotides.
    Jensen MA, Anderson KM, Davis RW. Nucleosides Nucleotides Nucleic Acids. 2010;29(11):867-78. [PubMed]
  16. DMSO and betaine greatly improve amplification of GC-rich constructs in de novo synthesis.
    Jensen MA, Fukushima M, Davis RW. PLoS One. 2010;5(6):e11024. PMCID: 2883997. [PubMed]
  17. Multiplex identification of microbes.
    Hyman RW, St Onge RP, Allen EA, Miranda M, Aparicio AM, Fukushima M, Davis RW. Appl Environ Microbiol. 2010;76(12):3904-10. PMCID: 2893500. [PubMed]
  18. A direct comparison of the KB Basecaller and phred for identifying the bases from DNA sequencing using chain termination chemistry.
    Hyman RW, Jiang H, Fukushima M, Davis RW. BMC Res Notes. 2010;3:257. PMCID: 3020662. [PubMed]
  19. Systematic analysis of genome-wide fitness data in yeast reveals novel gene function and drug action.
    Hillenmeyer ME, Ericson E, Davis RW, Nislow C, Koller D, Giaever G. Genome Biol. 2010;11(3):R30. PMCID: 2864570. [PubMed]
  20. Semi-automated library preparation for high-throughput DNA sequencing platforms.
    Farias-Hesson E, Erikson J, Atkins A, Shen P, Davis RW, Scharfe C, Pourmand N. J Biomed Biotechnol. 2010;2010:617469. PMCID: 2896710. [PubMed]
  21. Sequential use of transcriptional profiling, expression quantitative trait mapping, and gene association implicates MMP20 in human kidney aging.
    Wheeler HE, Metter EJ, Tanaka T, Absher D, Higgins J, Zahn JM, Wilhelmy J, Davis RW, Singleton A, Myers RM, Ferrucci L, Kim SK. PLoS Genet. 2009;5(10):e1000685. PMCID: 2752811. [PubMed]
  22. Isolating highly enriched populations of circulating epithelial cells and other rare cells from blood using a magnetic sweeper device.
    Talasaz AH, Powell AA, Huber DE, Berbee JG, Roh KH, Yu W, Xiao W, Davis MM, Pease RF, Mindrinos MN, Jeffrey SS, Davis RW. Proc Natl Acad Sci U S A. 2009;106(10):3970-5. PMCID: 2645911. [PubMed]
  23. Whole genome survey of coding SNPs reveals a reproducible pathway determinant of Parkinson disease.
    Srinivasan BS, Doostzadeh J, Absalan F, Mohandessi S, Jalili R, Bigdeli S, Wang J, Mahadevan J, Lee CL, Davis RW, William Langston J, Ronaghi M. Hum Mutat. 2009;30(2):228-38. PMCID: 2793088. [PubMed]
  24. A dynamic network of transcription in LPS-treated human subjects.
    Seok J, Xiao W, Moldawer LL, Davis RW, Covert MW. BMC Syst Biol. 2009;3:78. PMCID: 2729748. [PubMed]
  25. Mapping gene associations in human mitochondria using clinical disease phenotypes.
    Scharfe C, Lu HH, Neuenburg JK, Allen EA, Li GC, Klopstock T, Cowan TM, Enns GM, Davis RW. PLoS Comput Biol. 2009;5(4):e1000374. PMCID: 2668170. [PubMed]
  26. Meiotic recombination generates rich diversity in NK cell receptor genes, alleles, and haplotypes.
    Norman PJ, Abi-Rached L, Gendzekhadze K, Hammond JA, Moesta AK, Sharma D, Graef T, McQueen KL, Guethlein LA, Carrington CV, Chandanayingyong D, Chang YH, Crespi C, Saruhan-Direskeneli G, Hameed K, Kamkamidze G, Koram KA, Layrisse Z, Matamoros N, Mila J, Park MH, Pitchappan RM, Ramdath DD, Shiau MY, Stephens HA, Struik S, Tyan D, Verity DH, Vaughan RW, Davis RW, Fraser PA, Riley EM, Ronaghi M, Parham P. Genome Res. 2009;19(5):757-69. PMCID: 2675964. [PubMed]
  27. A genome-wide screen for regulators of TORC1 in response to amino acid starvation reveals a conserved Npr2/3 complex.
    Neklesa TK, Davis RW. PLoS Genet. 2009;5(6):e1000515. PMCID: 2686269. [PubMed]
  28. Alternative splicing of PTC7 in Saccharomyces cerevisiae determines protein localization.
    Juneau K, Nislow C, Davis RW. Genetics. 2009;183(1):185-94. PMCID: 2746143. [PubMed]
  29. Electrical detection of protein biomarkers using bioactivated microfluidic channels.
    Javanmard M, Talasaz AH, Nemat-Gorgani M, Pease F, Ronaghi M, Davis RW. Lab Chip. 2009;9(10):1429-34. PMCID: 2778468. [PubMed]
  30. Electrical Detection of Proteins and DNA using Bioactivated Microfluidic Channels: Theoretical and Experimental Considerations.
    Javanmard M, Esfandyarpour H, Pease F, Davis RW. J Vac Sci Technol B Microelectron Nanometer Struct Process Meas Phenom. 2009;27(6):3099-103. PMCID: 2868200. [PubMed]
  31. A Microfluidic Platform for Characterization of Protein-Protein Interactions.
    Javanmard M, Talasaz AH, Nemat-Gorgani M, Huber DE, Pease F, Ronaghi M, Davis RW. IEEE Sens J. 2009;9(8):883-91. PMCID: 2868195. [PubMed]
  32. Multiplex protein assays based on real-time magnetic nanotag sensing.
    Osterfeld SJ, Yu H, Gaster RS, Caramuta S, Xu L, Han SJ, Hall DA, Wilson RJ, Sun S, White RL, Davis RW, Pourmand N, Wang SX. Proc Natl Acad Sci U S A. 2008;105(52):20637-40. PMCID: 2602607. [PubMed]
  33. High-resolution, in vivo magnetic resonance imaging of Drosophila at 18.8 Tesla.
    Null B, Liu CW, Hedehus M, Conolly S, Davis RW. PLoS One. 2008;3(7):e2817. PMCID: 2474967. [PubMed], [Publisher Full Text]
  34. Superoxide anions regulate TORC1 and its ability to bind Fpr1:rapamycin complex.
    Neklesa TK, Davis RW. Proc Natl Acad Sci U S A. 2008;105(39):15166-71. PMCID: 2567509. [PubMed]
  35. A comprehensive assay for targeted multiplex amplification of human DNA sequences.
    Krishnakumar S, Zheng J, Wilhelmy J, Faham M, Mindrinos M, Davis R. Proc Natl Acad Sci U S A. 2008 Jul 8;105(27):9296-301. Epub 2008 Jul 2. [PubMed], [Publisher Full Text]
  36. Pervasive and persistent redundancy among duplicated genes in yeast.
    Dean EJ, Davis JC, Davis RW, Petrov DA. PLoS Genet. 2008 Jul 4;4(7):e1000113. PMCID: 2440806. [PubMed], [Publisher Full Text]
  37. High throughput automated allele frequency estimation by pyrosequencing.
    Doostzadeh J, Shokralla S, Absalan F, Jalili R, Mohandessi S, Langston JW, Davis RW, Ronaghi M, Gharizadeh B. PLoS ONE. 2008 Jul 16;3(7):e2693. [PubMed], [Publisher Full Text]
  38. Conformational flexibility of a model protein upon immobilization on self-assembled monolayers.
    Bigdeli S, Talasaz AH, Ståhl P, Persson HH, Ronaghi M, Davis RW, Nemat-Gorgani M. Biotechnol Bioeng. 2008 May 1;100(1):19-27. [PubMed], [Full Text PDF]
  39. The chemical genomic portrait of yeast: uncovering a phenotype for all genes.
    Hillenmeyer, M. E. Fung, E. Wildenhain, J. Pierce, S. E. Hoon, S. Lee, W. Proctor, M. St Onge, R. P. Tyers, M. Koller, D. Altman, R. B. Davis, R. W. Nislow, C. Giaever, G. Science. 2008 Apr 18;320(5874):362-5. PMCID: 2794835. [PubMed], [Publisher Full Text]
  40. Microfluidic leukocyte isolation for gene expression analysis in critically ill hospitalized patients.
    Russom, A. Sethu, P. Irimia, D. Mindrinos, M. N. Calvano, S. E. Garcia, I. Finnerty, C. Tannahill, C. Abouhamze, A. Wilhelmy, J. Lopez, M. C. Baker, H. V. Herndon, D. N. Lowry, S. F. Maier, R. V. Davis, R. W. Moldawer, L. L. Tompkins, R. G. Toner, M. Clin Chem. 2008 May;54(5):891-900. Epub 2008 Mar 28. [PubMed], [Publisher Full Text]
  41. Bisphenol A induces a profile of tumor aggressiveness in high-risk cells from breast cancer patients.
    Dairkee, S. H. Seok, J. Champion, S. Sayeed, A. Mindrinos, M. Xiao, W. Davis, R. W. Goodson, W. H. Cancer Res. 2008 Apr 1;68(7):2076-80. [PubMed], [Publisher Full Text]
  42. An integrated platform of genomic assays reveals small-molecule bioactivities.
    Hoon, S. Smith, A. M. Wallace, I. M. Suresh, S. Miranda, M. Fung, E. Proctor, M. Shokat, K. M. Zhang, C. Davis, R. W. Giaever, G. StOnge, R. P. Nislow, C. Nat Chem Biol. 2008 Aug;4(8):498-506. Epub 2008 Jul 11. [PubMed], [Publisher Full Text]
  43. A pico-calorimetric method for DNA sequencing.
    Esfandyarpour, H.; Pease, R.F.W.; Davis, R.W. J. Vac Sci. and Technol. B 26(2), 2008.
  44. Real Time Simulation of Pyrophosphate Concentration and Heat Detection in Thermosequencing.
    Esfandyarpour, H. Zheng, B. Pease, RFW. Davis, R.W. Biomicrofluidics 2(1), 2008.
  45. Gate-Controlled Microfluidic with Magnetic Bead in DNA Sequencing.
    Esfandyarpour, H. Davis R.W. invited and to appear in International Journal of Microfluidics and Nanofluidics.
  46. A system for multiplexed direct electrical detection of DNA synthesis.
    Anderson, E. P. Daniels, J. S. Yu, H. Karhanek, M. Lee, T. H. Davis, R. W. Pourmand, N. Sensors and Actuators B: Chemical 129(1):79-86, 29 January 2008. PMCID: 2344141. [Full Text]
  47. Multiplexed proximity ligation assays to profile putative plasma biomarkers relevant to pancreatic and ovarian cancer.
    Fredriksson, S. Horecka, J. Terje Brustugun, O. Schlingemann, J. Koong, A. C. Tibshirani, R. Davis, R. W. Clin Chem 54(3):582-9 (2008). [PubMed], [Publisher Full Text]
  48. Interference of globin genes with biomarker discovery for allograft rejection in peripheral blood samples.
    Li, L. Ying, L. Naesens, M. Xiao, W. Sigdel, T. Hsieh, S. Martin, J. Chen, R. Liu, K. Mindrinos, M. Davis, R. Sarwal, M. Physiol Genomics 32(2):190-7 (2008). [PubMed], [Publisher Full Text]
  49. High-throughput creation of a whole-genome collection of yeast knockout strains.
    Chu, A. M. Davis, R. W. Methods Mol Biol. 2008;416:205-20. [PubMed], [Publisher Full Text]
  50. Genome-wide analysis of barcoded Saccharomyces cerevisiae gene-deletion mutants in pooled cultures.
    Pierce, S. E. Davis, R. W. Nislow, C. Giaever, G. Nat Protoc 2(11):2958-74 (2007). [PubMed], [Publisher Full Text]
  51. Diverse cellular functions of the Hsp90 molecular chaperone uncovered using systems approaches.
    McClellan, A. J. Xia, Y. Deutschbauer, A. M. Davis, R. W. Gerstein, M. Frydman, J. Cell 131(1):121-35 (2007). [PubMed], [Publisher Full Text]
  52. Conformational flexibility of a model protein upon immobilization on selfassembled monolayers.
    Bigdeli, S. Talasaz, A. H. Stahl, P. Persson, H. H. Ronaghi, M. Davis, R. W. Nemat-Gorgani, M. Biotechnol Bioeng. (2007). [PubMed], [Publisher]
  53. A novel catechol-based universal support for oligonucleotide synthesis.
    Anderson, K.M. Jaquinod, L. Jensen, M.A. Ngo, N. Davis, R.W. J Org Chem 72(26):9875-80 (2007). [PubMed], [Publisher Full Text]
  54. Connector inversion probe technology: a powerful one-primer multiplex DNA amplification system for numerous scientific applications.
    Akhras, M.S. Unemo, M. Thiyagarajan, S. Nyren, P. Davis, R.W. Fire, A.Z. Pourmand, N. PLoS ONE 2(9):e915 (2007). [PubMed], [Publisher Full Text]
  55. A high-resolution atlas of nucleosome occupancy in yeast.
    Lee, W. Tillo, D. Bray, N. Morse, R. H. Davis, R.W. Hughes, T. R. Nislow, C. Nat Genet 39(10):1235-44 (2007). [PubMed], [Publisher Full Text]
  56. Unusual selection on the KIR3DL1/S1 natural killer cell receptor in Africans.
    Norman, P. J. Abi-Rached, L. Gendzekhadze, K. Korbel, D. Gleimer, M. Rowley, D. Bruno, D. Carrington, C.V. Chandanayingyong, D. Chang, Y.H. Crespi, C. Saruhan-Direskeneli, G. Fraser, P.A. Hameed, K. Kamkamidze, G. Koram, K. A. Layrisse, Z. Matamoros, N. Mila, J. Park, M. H. Pitchappan, R. M. Ramdath, D.D. Shiau, M.Y. Stephens, H.A. Struik, S. Verity, D.H. Vaughan, R.W. Tyan, D. Davis, R.W. Riley, E.M. Ronaghi, M. Parham, P. Nat Genet 39(9):1092-9 (2007). [PubMed], [Publisher Full Text]
  57. PathogenMip assay: a multiplex pathogen detection assay.
    Akhras, M.S. Thiyagarajan, S. Villablanca, A.C. Davis, R.W. Nyren, P. Pourmand, N. PLoS ONE 2(2):e223 (2007). [PubMed], [Publisher Full Text]
  58. Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789.
    Wei W, McCusker JH, Hyman RW, Jones T, Ning Y, Cao Z, Gu Z, Bruno D, Miranda M, Nguyen M, Wilhelmy J, Komp C, Tamse R, Wang X, Jia P, Luedi P, Oefner PJ, David L, Dietrich FS, Li Y, Davis RW, Steinmetz LM. Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12825-30. Epub 2007 Jul 25. [PubMed]
  59. Multigene amplification and massively parallel sequencing for cancer mutation discovery.
    Dahl F, Stenberg J, Fredriksson S, Welch K, Zhang M, Nilsson M, Bicknell D, Bodmer WF, Davis RW, Ji H. Proc Natl Acad Sci U S A. 2007 May 17; [Epub ahead of print] [PubMed]
  60. Branch migration displacement assay with automated heuristic analysis for discrete DNA length measurement using DNA microarrays.
    Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6146-51. Epub 2007 Mar 27. [PubMed]
  61. Multiplexed protein detection by proximity ligation for cancer biomarker validation.
    Fredriksson S, Dixon W, Ji H, Koong AC, Mindrinos M, Davis RW. Nat Methods. 2007 Apr;4(4):327-9. Epub 2007 Mar 18. [PubMed]
  62. Multiplex amplification of all coding sequences within 10 cancer genes by Gene-Collector.
    Fredriksson S, Baner J, Dahl F, Chu A, Ji H, Welch K, Davis RW. Nucleic Acids Res. 2007;35(7):e47. Epub 2007 Feb 22. [PubMed]
  63. PathogenMip Assay: A Multiplex Pathogen Detection Assay.
    Akhras MS, Thiyagarajan S, Villablanca AC, Davis RW, Nyren P, Pourmand N. PLoS ONE. 2007 Feb 21;2:e223. [PubMed]
  64. Accelerating the discovery of biologically active small molecules using a high-throughput yeast halo assay.
    Gassner NC,Tamble CM, Bock JE, Cotton N, White KN, Tenney K, St Onge RP, Proctor MJ, Giaever G, Nislow C, Davis RW, Crews P, Holman TR, Lokey RS. J Nat Prod. 2007 Mar;70(3):383-90. Epub 2007 Feb 10. [PubMed]
  65. High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing.
    Juneau K, Palm C, Miranda M, Davis RW. Proc Natl Acad Sci U S A. 2007 Jan 30;104(5):1522-7. Epub 2007 Jan 23. [PubMed]
  66. Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions.
    Onge RP, Mani R, Oh J, Proctor M, Fung E, Davis RW, Nislow C, Roth FP, Giaever G. Nat Genet. 2007 Feb;39(2):199-206. Epub 2007 Jan 7. [PubMed]
  67. Rapid and Highly Informative Diagnostic Assay for H5N1 Influenza Viruses.
    Pourmand N, Diamond L, Garten R, Erickson JP, Kumm J, Donis RO, Davis RW. PLoS ONE. 2006 Dec 20;1:e95. [PubMed]
  68. Reproducibility Probability Score--incorporating measurement variability across laboratories for gene selection.
    Lin G, He X, Ji H, Shi L, Davis RW, Zhong S. Nat Biotechnol. 2006 Dec;24(12):1476-7. [PubMed]
  69. PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens.
    Thiyagarajan S, Karhanek M, Akhras M, Davis RW, Pourmand N. BMC Bioinformatics. 2006 Nov 14;7:500. [PubMed]
  70. Current rectification with poly-l-lysine-coated quartz nanopipettes.
    Umehara S, Pourmand N, Webb CD, Davis RW, Yasuda K, Karhanek M. Nano Lett. 2006 Nov;6(11):2486-92. [PubMed]
  71. Cell-specific expression and pathway analyses reveal alterations in trauma-related human T cell and monocyte pathways.
    Laudanski K, Miller-Graziano C, Xiao W, Mindrinos MN, Richards DR, De A, Moldawer LL, Maier RV, Bankey P, Baker HV, Brownstein BH, Cobb JP, Calvano SE, Davis RW, Tompkins RG. Proc Natl Acad Sci U S A. 2006 Oct 17;103(42):15564-9. Epub 2006 Oct 10. [PubMed]
  72. A high-resolution map of transcription in the yeast genome.
    David, L., Huber, W., Granovskaia, M., Toedling, J., Palm, C.J., Bofkin, L., Jones, T., Davis, R.W. & Steinmetz, L.M. Proc Natl Acad Sci U S A 103, 5320-5 (2006). [PubMed]
  73. Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae.
    Kastenmayer JP, Ni L, Chu A, Kitchen LE, Au WC, Yang H, Carter CD, Wheeler D, Davis RW, Boeke JD, Snyder MA, Basrai MA. Genome Res. 2006 Mar;16(3):365-73. [PubMed]
  74. A haplotype framework for cystic fibrosis mutations in Iran.
    Elahi, E., Khodadad, A., Kupershmidt, I., Ghasemi, F., Alinasab, B., Naghizadeh, R., Eason, R.G., Amini, M., Esmaili, M., Esmaeili Dooki, M.R., Sanati, M.H., Davis, R.W., Ronaghi, M. & Thorstenson, Y.R. J Mol Diagn 8, 119-27 (2006). [PubMed]
  75. Data quality in genomics and microarrays.
    Ji, H. & Davis, R.W. Nat Biotechnol 24, 1112-3 (2006). [PubMed]
  76. Molecular inversion probe analysis of gene copy alterations reveals distinct categories of colorectal carcinoma.
    Ji, H., Kumm, J., Zhang, M., Farnam, K., Salari, K., Faham, M., Ford, J.M. & Davis, R.W. Cancer Res 66, 7910-9 (2006). [PubMed]
  77. Introns regulate RNA and protein abundance in yeast.
    Juneau, K., Miranda, M., Hillenmeyer, M.E., Nislow, C. & Davis, R.W. Genetics 174, 511-8 (2006). [PubMed]
  78. High dynamic range characterization of the trauma patient plasma proteome.
    Liu, T., Qian, W.J., Gritsenko, M.A., Xiao, W., Moldawer, L.L., Kaushal, A., Monroe, M.E., Vamum, S.M., Moore, R.J., Purvine, S.O., Maier, R.V., Davis, R.W., Tompkins, R.G., Camp, D.G., 2nd & Smith, R.D. Mol Cell Proteomics (2006). [PubMed]
  79. A unique and universal molecular barcode array.
    Pierce, S.E., Fung, E.L., Jaramillo, D.F., Chu, A.M., Davis, R.W., Nislow, C. & Giaever, G. Nat Methods 3, 601-3 (2006). [PubMed]
  80. Direct electrical detection of DNA synthesis.
    Pourmand, N., Karhanek, M., Persson, H.H., Webb, C.D., Lee, T.H., Zahradnikova, A. & Davis, R.W. Proc Natl Acad Sci U S A 103, 6466-70 (2006). [PubMed]
  81. Prediction of protein orientation upon immobilization on biological and nonbiological surfaces.
    Talasaz, A.H., Nemat-Gorgani, M., Liu, Y., Stahl, P., Dutton, R.W., Ronaghi, M. & Davis, R.W. Proc Natl Acad Sci U S A 103, 14773-8 (2006). [PubMed]
  82. Analysis of hybridization on the molecular barcode GeneChip microarray.
    Walton, S.P., Mindrinos, M.N. & Davis, R.W. Biochem Biophys Res Commun 348, 689-96 (2006). [PubMed]
  83. Transcriptional profiling of aging in human muscle reveals a common aging signature.
    Zahn, J.M., Sonu, R., Vogel, H., Crane, E., Mazan-Mamczarz, K., Rabkin, R., Davis, R.W., Becker, K.G., Owen, A.B. & Kim, S.K. PLoS Genet 2, e115 (2006). [PubMed]
  84. Profiling early infection responses: Pseudomonas aeruginosa eludes host defenses by suppressing antimicrobial peptide gene expression.
    Apidianakis, Y., Mindrinos, M.N., Xiao, W., Lau, G.W., Baldini, R.L., Davis, R.W. & Rahme, L.G. Proc Natl Acad Sci U S A 102, 2573-8 (2005). [PubMed]
  85. A network-based analysis of systemic inflammation in humans.
    Calvano, S.E., Xiao, W., Richards, D.R., Felciano, R.M., Baker, H.V., Cho, R.J., Chen, R.O., Brownstein, B.H., Cobb, J.P., Tschoeke, S.K., Miller-Graziano, C., Moldawer, L.L., Mindrinos, M.N., Davis, R.W., Tompkins, R.G. & Lowry, S.F. Nature 437, 1032-7 (2005). [PubMed]
  86. Application of genome-wide expression analysis to human health and disease.
    Cobb, J.P., Mindrinos, M.N., Miller-Graziano, C., Calvano, S.E., Baker, H.V., Xiao, W., Laudanski, K., Brownstein, B.H., Elson, C.M., Hayden, D.L., Herndon, D.N., Lowry, S.F., Maier, R.V., Schoenfeld, D.A., Moldawer, L.L., Davis, R.W., Tompkins, R.G., Baker, H.V., Bankey, P., Billiar, T., Brownstein, B.H., Calvano, S.E., Camp, D., Chaudry, I., Cobb, J.P., Davis, R.W., Elson, C.M., Freeman, B., Gamelli, R., Gibran, N., Harbrecht, B., Hayden, D.L., Heagy, W., Heimbach, D., Herndon, D.N., Horton, J., Hunt, J., Laudanski, K., Lederer, J., Lowry, S.F., Maier, R.V., Mannick, J., McKinley, B., Miller-Graziano, C., Mindrinos, M.N., Minei, J., Moldawer, L.L., Moore, E., Moore, F., Munford, R., Nathens, A., O'Keefe, G., Purdue, G., Rahme, L., Remick, D., Sailors, M., Schoenfeld, D.A., Shapiro, M., Silver, G., Smith, R., Stephanopoulos, G., Stormo, G., Tompkins, R.G., Toner, M., Warren, S., West, M., Wolfe, S., Xiao, W. & Young, V. Proc Natl Acad Sci U S A 102, 4801-6 (2005). [PubMed]
  87. Quantitative trait loci mapped to single-nucleotide resolution in yeast.
    Deutschbauer, A.M. & Davis, R.W. Nat Genet 37, 1333-40 (2005). [PubMed]
  88. Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast.
    Deutschbauer, A.M., Jaramillo, D.F., Proctor, M., Kumm, J., Hillenmeyer, M.E., Davis, R.W., Nislow, C. & Giaever, G. Genetics 169, 1915-25 (2005). [PubMed]
  89. Multiplexed variation scanning for 1,000 amplicons in hundreds of patients using mismatch repair detection (MRD) on tag arrays.
    Faham M, Zheng J, Moorhead M, Fakhrai-Rad H, Namsaraev E, Wong K, Wang Z, Chow SG, Lee L, Suyenaga K, Reichert J, Boudreau A, Eberle J, Bruckner C, Jain M, Karlin-Neumann G, Jones HB, Willis TD, Buxbaum JD, Davis RW. Proc Natl Acad Sci U S A. 2005 Oct 11;102(41):14717-22. Epub 2005 Oct 3. [PubMed]
  90. A latent variable model for chemogenomic profiling.
    Flaherty, P., Giaever, G., Kumm, J., Jordan, M.I. & Arkin, A.P. Bioinformatics 21, 3286-93 (2005).
  91. Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae.
    Gu, Z., David, L., Petrov, D., Jones, T., Davis, R.W. & Steinmetz, L.M. Proc Natl Acad Sci U S A 102, 1092-7 (2005). [PubMed]
  92. Highly multiplexed molecular inversion probe genotyping: over 10,000 targeted SNPs genotyped in a single tube assay.
    Hardenbol, P., Yu, F., Belmont, J., Mackenzie, J., Bruckner, C., Brundage, T., Boudreau, A., Chow, S., Eberle, J., Erbilgin, A., Falkowski, M., Fitzgerald, R., Ghose, S., Iartchouk, O., Jain, M., Karlin-Neumann, G., Lu, X., Miao, X., Moore, B., Moorhead, M., Namsaraev, E., Pasternak, S., Prakash, E., Tran, K., Wang, Z., Jones, H.B., Davis, R.W., Willis, T.D. & Gibbs, R.A. Genome Res 15, 269-75 (2005). [PubMed]
  93. Bioluminescence regenerative cycle (BRC) system: theoretical considerations for nucleic acid quantification assays.
    Hassibi, A., Contag, C., Vlad, M.O., Hafezi, M., Lee, T.H., Davis, R.W. & Pourmand, N. Biophys Chem 116, 175-85 (2005). [PubMed]
  94. Microbes on the human vaginal epithelium.
    Hyman, R.W., Fukushima, M., Diamond, L., Kumm, J., Giudice, L.C. & Davis, R.W. Proc Natl Acad Sci U S A 102, 7952-7 (2005). [PubMed]
  95. Single DNA molecule detection using nanopipettes and nanoparticles.
    Karhanek, M., Kemp, J.T., Pourmand, N., Davis, R.W. & Webb, C.D. Nano Lett 5, 403-7 (2005). [PubMed]
  96. A novel method for STR-based DNA profiling using microarrays.
    Kemp, J.T., Davis, R.W., White, R.L., Wang, S.X. & Webb, C.D. J Forensic Sci 50, 1109-13 (2005). [PubMed]
  97. Genome-Wide Requirements for Resistance to Functionally Distinct DNA-Damaging Agents.
    Lee, W., St Onge, R.P., Proctor, M., Flaherty, P., Jordan, M.I., Arkin, A.P., Davis, R.W., Nislow, C. & Giaever, G. PLoS Genet 1, e24 (2005). [PubMed]
  98. The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans.
    Loftus, B.J., Fung, E., Roncaglia, P., Rowley, D., Amedeo, P., Bruno, D., Vamathevan, J., Miranda, M., Anderson, I.J., Fraser, J.A., Allen, J.E., Bosdet, I.E., Brent, M.R., Chiu, R., Doering, T.L., Donlin, M.J., D'Souza, C.A., Fox, D.S., Grinberg, V., Fu, J., Fukushima, M., Haas, B.J., Huang, J.C., Janbon, G., Jones, S.J., Koo, H.L., Krzywinski, M.I., Kwon-Chung, J.K., Lengeler, K.B., Maiti, R., Marra, M.A., Marra, R.E., Mathewson, C.A., Mitchell, T.G., Pertea, M., Riggs, F.R., Salzberg, S.L., Schein, J.E., Shvartsbeyn, A., Shin, H., Shumway, M., Specht, C.A., Suh, B.B., Tenney, A., Utterback, T.R., Wickes, B.L., Wortman, J.R., Wye, N.H., Kronstad, J.W., Lodge, J.K., Heitman, J., Davis, R.W., Fraser, C.M. & Hyman, R.W. Science 307, 1321-4 (2005). [PubMed]
  99. Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry.
    Qian, W.J., Jacobs, J.M., Camp, D.G., 2nd, Monroe, M.E., Moore, R.J., Gritsenko, M.A., Calvano, S.E., Lowry, S.F., Xiao, W., Moldawer, L.L., Davis, R.W., Tompkins, R.G. & Smith, R.D. Proteomics 5, 572-84 (2005). [PubMed]
  100. Quantitative Proteome Analysis of Human Plasma following in Vivo Lipopolysaccharide Administration Using 16O/18O Labeling and the Accurate Mass and Time Tag Approach.
    Qian, W.J., Monroe, M.E., Liu, T., Jacobs, J.M., Anderson, G.A., Shen, Y., Moore, R.J., Anderson, D.J., Zhang, R., Calvano, S.E., Lowry, S.F., Xiao, W., Moldawer, L.L., Davis, R.W., Tompkins, R.G., Camp, D.G., 2nd & Smith, R.D. Mol Cell Proteomics 4, 700-709 (2005). [PubMed]
  101. A multi-enzyme model for Pyrosequencing.
    Agah, A., Aghajan, M., Mashayekhi, F., Amini, S., Davis, R.W., Plummer, J.D., Ronaghi, M. & Griffin, P.B. Nucleic Acids Res 32, e166 (2004). [PubMed]
  102. Characterization of synthetic DNA bar codes in Saccharomyces cerevisiae gene-deletion strains.
    Eason, R.G., Pourmand, N., Tongprasit, W., Herman, Z.S., Anthony, K., Jejelowo, O., Davis, R.W. & Stolc, V. Proc Natl Acad Sci U S A 101, 11046-51 (2004). [PubMed]
  103. SNP discovery in pooled samples with mismatch repair detection.
    Fakhrai-Rad H, Zheng J, Willis TD, Wong K, Suyenaga K, Moorhead M, Eberle J, Thorstenson YR, Jones T, Davis RW, Namsaraev E, Faham M. Genome Res. 2004 Jul;14(7):1404-12. [PubMed]
  104. Inflammation and Host Response to Injury, Large-Scale Collaborative Research Program. Whole blood and leukocyte RNA isolation for gene expression analyses.
    Feezor RJ, Baker HV, Mindrinos M, Hayden D, Tannahill CL, Brownstein BH, Fay A, MacMillan S, Laramie J, Xiao W, Moldawer LL, Cobb JP, Laudanski K, Miller-Graziano CL, Maier RV, Schoenfeld D, Davis RW, Tompkins RG. Physiol Genomics. 2004 Nov 17;19(3):247-54. [PubMed]
  105. Genomic and proteomic determinants of outcome in patients undergoing thoracoabdominal aortic aneurysm repair.
    Feezor RJ, Baker HV, Xiao W, Lee WA, Huber TS, Mindrinos M, Kim RA, Ruiz-Taylor L, Moldawer LL, Davis RW, Seeger JM. J Immunol. 2004 Jun 1;172(11):7103-9. [PubMed]
  106. Chemogenomic profiling: identifying the functional interactions of small molecules in yeast.
    Giaever, G., Flaherty, P., Kumm, J., Proctor, M., Nislow, C., Jaramillo, D.F., Chu, A.M., Jordan, M.I., Arkin, A.P. & Davis, R.W. Proc Natl Acad Sci U S A 101, 793-8 (2004). [PubMed]
  107. The diploid genome sequence of Candida albicans.
    Jones, T., Federspiel, N.A., Chibana, H., Dungan, J., Kalman, S., Magee, B.B., Newport, G., Thorstenson, Y.R., Agabian, N., Magee, P.T., Davis, R.W. & Scherer, S. Proc Natl Acad Sci U S A 101, 7329-34 (2004). [PubMed]
  108. Regulatory networks affected by iron availability in Candida albicans.
    Lan CY, Rodarte G, Murillo LA, Jones T, Davis RW, Dungan J, Newport G, Agabian N. Mol Microbiol. 2004 Sep;53(5):1451-69. [PubMed]
  109. Sister-chromatid cohesion mediated by the alternative RF-CCtf18/Dcc1/Ctf8, the helicase Chl1 and the polymerase-alpha-associated protein Ctf4 is essential for chromatid disjunction during meiosis II.
    Petronczki M, Chwalla B, Siomos MF, Yokobayashi S, Helmhart W, Deutschbauer AM, Davis RW, Watanabe Y, Nasmyth K. J Cell Sci. 2004 Jul 15;117(Pt 16):3547-59. Epub 2004 Jun 29. [PubMed]
  110. Integrative analysis of the mitochondrial proteome in yeast.
    Prokisch H, Scharfe C, Camp DG 2nd, Xiao W, David L, Andreoli C, Monroe ME, Moore RJ, Gritsenko MA, Kozany C, Hixson KK, Mottaz HM, Zischka H, Ueffing M, Herman ZS, Davis RW, Meitinger T, Oefner PJ, Smith RD, Steinmetz LM. PLoS Biol. 2004 Jun;2(6):e160. Epub 2004 Jun 15. [PubMed]
  111. A transcriptional profile of aging in the human kidney.
    Rodwell, G.E., Sonu, R., Zahn, J.M., Lund, J., Wilhelmy, J., Wang, L., Xiao, W., Mindrinos, M., Crane, E., Segal, E., Myers, B.D., Brooks, J.D., Davis, R.W., Higgins, J., Owen, A.B. & Kim, S.K. PLoS Biol 2, e427 (2004). [PubMed]
  112. Ultra-high-efficiency strong cation exchange LC/RPLC/MS/MS for high dynamic range characterization of the human plasma proteome.
    Shen Y, Jacobs JM, Camp DG 2nd, Fang R, Moore RJ, Smith RD, Xiao W, Davis RW, Tompkins RG. Anal Chem. 2004 Feb 15;76(4):1134-44. [PubMed]
  113. Maximizing the potential of functional genomics.
    Steinmetz LM, Davis RW. Nat Rev Genet. 2004 Mar;5(3):190-201. [PubMed]
  114. To give or not to give? That is the question.
    Theologis A, Davis RW. Plant Physiol. 2004 May;135(1):4-9. [PubMed Central]
  115. A genome-wide study of gene activity reveals developmental signaling pathways in the preimplantation mouse embryo.
    Wang, Q.T., Piotrowska, K., Ciemerych, M.A., Milenkovic, L., Scott, M.P., Davis, R.W. & Zernicka-Goetz, M. Dev Cell 6, 133-44 (2004). [PubMed]
  116. GermOnline, a cross-species community knowledgebase on germ cell differentiation.
    Wiederkehr C, Basavaraj R, Sarrauste de Menthiere C, Hermida L, Koch R, Schlecht U, Amon A, Brachat S, Breitenbach M, Briza P, Caburet S, Cherry M, Davis R, Deutschbauer A, Dickinson HG, Dumitrescu T, Fellous M, Goldman A, Grootegoed JA, Hawley R, Ishii R, Jegou B, Kaufman RJ, Klein F, Lamb N, Maro B, Nasmyth K, Nicolas A, Orr-Weaver T, Philippsen P, Pineau C, Rabitsch KP, Reinke V, Roest H, Saunders W, Schroder M, Schedl T, Siep M, Villeneuve A, Wolgemuth DJ, Yamamoto M, Zickler D, Esposito RE, Primig M. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D560-7. [PubMed]
  117. Role of duplicated genes in genetic robustness against null mutations.
    Gu, Z., Steinmetz, L.M., Gu, X., Scharfe, C., Davis , R.W., Li, W.H. Nature 63-66., (2003). [PubMed]
  118. Multiplexed genotyping with sequence-tagged molecular inversion probes.
    Hardenbol, P., Baner, J., Jain, M., Nilsson, M., Namsaraev, E.A., Karlin-Neumann, G.A., Fakhrai-Rad, H., Ronaghi, M., Willis, T.D., Landegren, U. & Davis, R.W. Nat Biotechnol 21, 673-8 (2003). [PubMed]
  119. Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Yamada, K., Lim, J., Dale, J.M., Chen, H., Shinn, P., Palm, C.J., Southwick, A.M., Wu, H.C., Kim, C., Nguyen, M., Pham, P., Cheuk, R., Karlin-Newmann, G., Liu, S.X., Lam, B., Sakano, H., Wu, T., Yu, G., Miranda, M., Quach, H.L., Tripp, M., Chang, C.H., Lee, J.M., Toriumi, M., Chan, M.M., Tang, C.C., Onodera, C.S., Deng, J.M., Akiyama, K., Ansari, Y., Arakawa, T., Banh, J., Banno, F., Bowser, L., Brooks, S., Carninci, P., Chao, Q., Choy, N., Enju, A., Goldsmith, A.D., Gurjal, M., Hansen, N.F., Hayashizaki, Y., Johnson-Hopson, C., Hsuan, V.W., Iida, K., Karnes, M., Khan, S., Koesema, E., Ishida, J., Jiang, P.X., Jones, T., Kawai, J., Kamiya, A., Meyers, C., Nakajima, M., Narusaka, M., Seki, M., Sakurai, T., Satou, M., Tamse, R., Vaysberg, M., Wallender, E.K., Wong, C., Yamamura, Y., Yuan, S., Shinozaki, K., Davis, R.W., Theologis, A. & Ecker, J.R. Science 302, 842-6 (2003). [Pubmed]
  120. Genotyping African haplotypes in ATM using a co-spotted single-base extension assay.
    Jain, M., Thorstenson, Y.R., Faulkner, D.M., Pourmand, N., Jones, T., Au, M., Oefner, P.J., White, K.P. & Davis, R.W. Hum Mutat 22, 214-21 (2003). [PubMed]
  121. Region-specific changes in immediate early gene expression in response to sleep deprivation and recovery sleep in the mouse brain.
    Terao A, Greco MA, Davis RW, Heller HC, Kilduff TS. Neuroscience. 2003;120(4):1115-24. [PubMed]
  122. Differential increase in the expression of heat shock protein family members during sleep deprivation and during sleep.
    Terao A, Steininger TL, Hyder K, Apte-Deshpande A, Ding J, Rishipathak D, Davis RW, Heller HC, Kilduff TS. Neuroscience. 2003;116(1):187-200. [PubMed]
  123. Contributions of ATM mutations to familial breast and ovarian cancer.
    Thorstenson, Y.R., Roxas, A., Kroiss, R., Jenkins, M.A., Yu, K.M., Bachrich, T., Muhr, D., Wayne, T.L., Chu, G., Davis, R.W., Wagner, T.M. & Oefner, P.J. Cancer Res 63, 3325-33 (2003). [PubMed]
  124. Determination of hepatitis C virus genotype by Pyrosequencing.
    Elahi, E., Pourmand, N., Chaung, R., Rofoogaran, A., Boisver, J., Samimi-Rad, K., Davis, R.W. & Ronaghi, M. J Virol Methods 109, 171-6 (2003). [PubMed]
  125. The Ume6 regulon coordinates metabolic and meiotic gene expression in yeast.
    Williams, R.M., Primig, M., Washburn, B.K., Winzeler, E.A., Bellis, M., Sarrauste De Menthiere, C., Davis, R.W. & Esposito, R.E. Proc Natl Acad Sci U S A (2002). [PubMed]
  126. Sequence of Plasmodium falciparum chromosome 12.
    Hyman, R.W., Fung, E., Conway, A., Kurdi, O., Mao, J., Miranda, M., Nakao, B., Rowley, D., Tamaki, T., Wang, F. & Davis, R.W. Nature 419, 534-7 (2002). [PubMed]
  127. Genome sequence of the human malaria parasite Plasmodium falciparum.
    Gardner, M.J., Hall, N., Fung, E., White, O., Berriman, M., Hyman, R.W., Carlton, J.M., Pain, A., Nelson, K.E., Bowman, S., Paulsen, I.T., James, K., Eisen, J.A., Rutherford, K., Salzberg, S.L., Craig, A., Kyes, S., Chan, M.S., Nene, V., Shallom, S.J., Suh, B., Peterson, J., Angiuoli, S., Pertea, M., Allen, J., Selengut, J., Haft, D., Mather, M.W., Vaidya, A.B., Martin, D.M., Fairlamb, A.H., Fraunholz, M.J., Roos, D.S., Ralph, S.A., McFadden, G.I., Cummings, L.M., Subramanian, G.M., Mungall, C., Venter, J.C., Carucci, D.J., Hoffman, S.L., Newbold, C., Davis, R.W., Fraser, C.M. & Barrell, B. Nature 419, 498-511 (2002). [PubMed]
  128. Gene expression during the life cycle of Drosophila melanogaster.
    Arbeitman, M.N., Furlong, E.E., Imam, F., Johnson, E., Null, B.H., Baker, B.S., Krasnow, M.A., Scott, M.P., Davis, R.W. & White, K.P. Science 297, 2270-5 (2002). [PubMed]
  129. Functional profiling of the Saccharomyces cerevisiae genome.
    Giaever, G., Chu, A.M., Ni, L., Connelly, C., Riles, L., Veronneau, S., Dow, S., Lucau-Danila, A., Anderson, K., Andre, B., Arkin, A.P., Astromoff, A., El-Bakkoury, M., Bangham, R., Benito, R., Brachat, S., Campanaro, S., Curtiss, M., Davis, K., Deutschbauer, A., Entian, K.D., Flaherty, P., Foury, F., Garfinkel, D.J., Gerstein, M., Gotte, D., Guldener, U., Hegemann, J.H., Hempel, S., Herman, Z., Jaramillo, D.F., Kelly, D.E., Kelly, S.L., Kotter, P., LaBonte, D., Lamb, D.C., Lan, N., Liang, H., Liao, H., Liu, L., Luo, C., Lussier, M., Mao, R., Menard, P., Ooi, S.L., Revuelta, J.L., Roberts, C.J., Rose, M., Ross-Macdonald, P., Scherens, B., Schimmack, G., Shafer, B., Shoemaker, D.D., Sookhai-Mahadeo, S., Storms, R.K., Strathern, J.N., Valle, G., Voet, M., Volckaert, G., Wang, C.Y., Ward, T.R., Wilhelmy, J., Winzeler, E.A., Yang, Y., Yen, G., Youngman, E., Yu, K., Bussey, H., Boeke, J.D., Snyder, M., Philippsen, P., Davis, R.W. & Johnston, M. Nature 418, 387-91 (2002). [PubMed]
  130. Systematic screen for human disease genes in yeast.
    Steinmetz, L.M., Scharfe, C., Deutschbauer, A.M., Mokranjac, D., Herman, Z.S., Jones, T., Chu, A.M., Giaever, G., Prokisch, H., Oefner, P.J. & Davis, R.W. Nat Genet 31, 400-4 (2002). [PubMed]
  131. Transcriptional response of Saccharomyces cerevisiae to DNA-damaging agents does not identify the genes that protect against these agents.
    Birrell, G.W., Brown, J.A., Wu, H.I., Giaever, G., Chu, A.M., Davis, R.W. & Brown, J.M. Proc Natl Acad Sci U S A 99, 8778-83 (2002). [PubMed]
  132. Multiplex Pyrosequencing.
    Pourmand, N., Elahi, E., Davis, R.W. & Ronaghi, M. Nucleic Acids Res 30, e31 (2002). [PubMed]
  133. Dissecting the architecture of a quantitative trait locus in yeast.
    Steinmetz, L.M., Sinha, H., Richards, D.R., Spiegelman, J.I., Oefner, P.J., McCusker, J.H. & Davis, R.W. Nature 416, 326-30 (2002). [PubMed]
  134. Identification and preliminary characterization of mouse Adam33.
    Gunn, T.M., Azarani, A., Kim, P.H., Hyman, R.W., Davis, R.W. & Barsh, G.S. BMC Genet 3, 2 (2002). [PubMed]
  135. Parallel phenotypic analysis of sporulation and postgermination growth in Saccharomyces cerevisiae.
    Deutschbauer, A.M., Williams, R.M., Chu, A.M. & Davis, R.W. Proc Natl Acad Sci U S A 99, 15530-5 (2002). [PubMed]
  136. Metabolic specialization associated with phenotypic switching in Candida albicans.
    Lan, C.Y., Newport, G., Murillo, L.A., Jones, T., Scherer, S., Davis, R.W. & Agabian, N. Proc Natl Acad Sci U S A 99, 14907-12 (2002). [PubMed]
  137. Yeast tRNA as carrier in the isolation of microscale RNA for global amplification and expression profiling.
    Wang, Q.T., Xiao, W., Mindrinos, M. & Davis, R.W. Biotechniques 33, 788, 790, 792 passim (2002). [PubMed]
  138. A genome-wide screen in Saccharomyces cerevisiae for genes affecting UV radiation sensitivity.
    Birrell, G.W., Giaever, G., Chu, A.M., Davis, R.W. & Brown, J.M. Proc Natl Acad Sci U S A 98, 12608-13 (2001). [PubMed]
  139. Replication dynamics of the yeast genome.
    Raghuraman, M.K., Winzeler, E.A., Collingwood, D., Hunt, S., Wodicka, L., Conway, A., Lockhart, D.J., Davis, R.W., Brewer, B.J. & Fangman, W.L. Science 294, 115-21 (2001). [PubMed]
  140. Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid.
    Barnett, M.J., Fisher, R.F., Jones, T., Komp, C., Abola, A.P., Barloy-Hubler, F., Bowser, L., Capela, D., Galibert, F., Gouzy, J., Gurjal, M., Hong, A., Huizar, L., Hyman, R.W., Kahn, D., Kahn, M.L., Kalman, S., Keating, D.H., Palm, C., Peck, M.C., Surzycki, R., Wells, D.H., Yeh, K.C., Davis, R.W., Federspiel, N.A. & Long, S.R. Proc Natl Acad Sci U S A 98, 9883-8 (2001). [PubMed]
  141. The composite genome of the legume symbiont Sinorhizobium meliloti.
    Galibert, F., Finan, T.M., Long, S.R., Puhler, A., Abola, P., Ampe, F., Barloy-Hubler, F., Barnett, M.J., Becker, A., Boistard, P., Bothe, G., Boutry, M., Bowser, L., Buhrmester, J., Cadieu, E., Capela, D., Chain, P., Cowie, A., Davis, R.W., Dreano, S., Federspiel, N.A., Fisher, R.F., Gloux, S., Godrie, T., Goffeau, A., Golding, B., Gouzy, J., Gurjal, M., Hernandez-Lucas, I., Hong, A., Huizar, L., Hyman, R.W., Jones, T., Kahn, D., Kahn, M.L., Kalman, S., Keating, D.H., Kiss, E., Komp, C., Lelaure, V., Masuy, D., Palm, C., Peck, M.C., Pohl, T.M., Portetelle, D., Purnelle, B., Ramsperger, U., Surzycki, R., Thebault, P., Vandenbol, M., Vorholter, F.J., Weidner, S., Wells, D.H., Wong, K., Yeh, K.C. & Batut, J. Science 293, 668-72 (2001). [PubMed]
  142. Expression monitoring using cDNA microarrays. A general protocol.
    Lou, X.J., Schena, M., Horrigan, F.T., Lawn, R.M. & Davis, R.W. Methods Mol Biol 175, 323-40 (2001). [PubMed]
  143. Genomic evidence for a complete sexual cycle in Candida albicans.
    Tzung, K.W., Williams, R.M., Scherer, S., Federspiel, N., Jones, T., Hansen, N., Bivolarevic, V., Huizar, L., Komp, C., Surzycki, R., Tamse, R., Davis, R.W. & Agabian, N. Proc Natl Acad Sci U S A 98, 3249-53 (2001). [PubMed]
  144. Initial sequencing and analysis of the human genome.
    Lander, E.S., Linton, L.M., Birren, B., Nusbaum, C., Zody, M.C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., et al. Nature 409, 860-921 (2001). [PubMed]
  145. A method for parallel, automated, thermal cycling of submicroliter samples.
    Nakane, J., Broemeling, D., Donaldson, R., Marziali, A., Willis, T.D., O'Keefe, M. & Davis, R.W. Genome Res 11, 441-7 (2001). [PubMed]
  146. Transcriptional regulation and function during the human cell cycle.
    Cho, R.J., Huang, M., Campbell, M.J., Dong, H., Steinmetz, L., Sapinoso, L., Hampton, G., Elledge, S.J., Davis, R.W. & Lockhart, D.J. Nat Genet 27, 48-54 (2001). [PubMed]
  147. Mapping genes in Saccharomyces cerevisiae and arabidopsis thaliana using high-density DNA arrays and denaturing high-performance liquid chromatography.
    Steinmetz, L., Mindrinos, M., Spiegelman, J., Richards, D., Xiao, W., Fankhauser, C., McCusker, J., Chory, J., Davis, R., Oefner, P. Hum. Mutat 17, 323 (2001).
  148. Global analysis of ATM polymorphism reveals significant functional constraint.
    Thorstenson, Y.R., Shen, P., Tusher, V.G., Wayne, T.L., Davis, R.W., Chu, G. & Oefner, P.J. Am J Hum Genet 69, 396-412 (2001). [PubMed]
  149. High-density arrays and insights into genome function.
    Steinmetz, L.M. & Davis, R.W. Biotechnol Genet Eng Rev 17, 109-46 (2000).
  150. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.
    Theologis, A., Ecker, J.R., Palm, C.J., Federspiel, N.A., Kaul, S., White, O., Alonso, J., Altafi, H., Araujo, R., Bowman, C.L., Brooks, S.Y., Buehler, E., Chan, A., Chao, Q., Chen, H., Cheuk, R.F., Chin, C.W., Chung, M.K., Conn, L., Conway, A.B., Conway, A.R., Creasy, T.H., Dewar, K., Dunn, P., Etgu, P., Feldblyum, T.V., Feng, J., Fong, B., Fujii, C.Y., Gill, J.E., Goldsmith, A.D., Haas, B., Hansen, N.F., Hughes, B., Huizar, L., Hunter, J.L., Jenkins, J., Johnson-Hopson, C., Khan, S., Khaykin, E., Kim, C.J., Koo, H.L., Kremenetskaia, I., Kurtz, D.B., Kwan, A., Lam, B., Langin-Hooper, S., Lee, A., Lee, J.M., Lenz, C.A., Li, J.H., Li, Y., Lin, X., Liu, S.X., Liu, Z.A., Luros, J.S., Maiti, R., Marziali, A., Militscher, J., Miranda, M., Nguyen, M., Nierman, W.C., Osborne, B.I., Pai, G., Peterson, J., Pham, P.K., Rizzo, M., Rooney, T., Rowley, D., Sakano, H., Salzberg, S.L., Schwartz, J.R., Shinn, P., Southwick, A.M., Sun, H., Tallon, L.J., Tambunga, G., Toriumi, M.J., Town, C.D., Utterback, T., Van Aken, S., Vaysberg, M., Vysotskaia, V.S., Walker, M., Wu, D., Yu, G., Fraser, C.M., Venter, J.C. & Davis, R.W. Nature 408, 816-20 (2000). [PubMed]
  151. A simple procedure for the analysis of single nucleotide polymorphisms facilitates map-based cloning in Arabidopsis.
    Drenkard, E., Richter, B.G., Rozen, S., Stutius, L.M., Angell, N.A., Mindrinos, M., Cho, R.J., Oefner, P.J., Davis, R.W. & Ausubel, F.M. Plant Physiol 124, 1483-92 (2000). [PubMed]
  152. The core meiotic transcriptome in budding yeasts.
    Primig, M., Williams, R.M., Winzeler, E.A., Tevzadze, G.G., Conway, A.R., Hwang, S.Y., Davis, R.W. & Esposito, R.E. Nat Genet 26, 415-23 (2000). [PubMed]
  153. Prevalence of small inversions in yeast gene order evolution.
    Seoighe, C., Federspiel, N., Jones, T., Hansen, N., Bivolarovic, V., Surzycki, R., Tamse, R., Komp, C., Huizar, L., Davis, R.W., Scherer, S., Tait, E., Shaw, D.J., Harris, D., Murphy, L., Oliver, K., Taylor, K., Rajandream, M.A., Barrell, B.G. & Wolfe, K.H. Proc Natl Acad Sci U S A 97, 14433-7 (2000). [PubMed]
  154. Functional analysis of the yeast genome by precise deletion and parallel phenotypic characterization.
    Winzeler, E.A., Liang, H., Shoemaker, D.D. & Davis, R.W. Novartis Found Symp 229, 105-9; discussion 109-11 (2000). [PubMed]
  155. Y chromosome sequence variation and the history of human populations.
    Underhill, P.A., Shen, P., Lin, A.A., Jin, L., Passarino, G., Yang, W.H., Kauffman, E., Bonne-Tamir, B., Bertranpetit, J., Francalacci, P., Ibrahim, M., Jenkins, T., Kidd, J.R., Mehdi, S.Q., Seielstad, M.T., Wells, R.S., Piazza, A., Davis, R.W., Feldman, M.W., Cavalli-Sforza, L.L. & Oefner, P.J. Nat Genet 26, 358-61 (2000). [PubMed]
  156. Real-time PCR-based method for assaying the purity of bacterial artificial chromosome preparations.
    Foreman, P.K. & Davis, R.W. Biotechniques 29, 410-2 (2000). [PubMed]
  157. Population genetic implications from sequence variation in four Y chromosome genes.
    Shen, P., Wang, F., Underhill, P.A., Franco, C., Yang, W.H., Roxas, A., Sung, R., Lin, A.A., Hyman, R.W., Vollrath, D., Davis, R.W., Cavalli-Sforza, L.L. & Oefner, P.J. Proc Natl Acad Sci U S A 97, 7354-9 (2000). [PubMed]
  158. Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays.
    Aharoni, A., Keizer, L.C., Bouwmeester, H.J., Sun, Z., Alvarez-Huerta, M., Verhoeven, H.A., Blaas, J., van Houwelingen, A.M., De Vos, R.C., van der Voet, H., Jansen, R.C., Guis, M., Mol, J., Davis, R.W., Schena, M., van Tunen, A.J. & O'Connell, A.P. Plant Cell 12, 647-62 (2000). [PubMed]
  159. DAtA: database of Arabidopsis thaliana annotation.
    Palm, C.J., Federspiel, N.A. & Davis, R.W. Nucleic Acids Res 28, 102-3 (2000). [PubMed]
  160. Comprehensive mutational analysis of the ATM gene by denaturing HPLC.
    Thorstenson, Y.R., Oefner, P.J., Goss, V., Davis, R.W., Gatti, R.A., Chu, G. Am. J. Hum. Genet 67 [Suppl. 2], 100 (2000).
  161. Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae.
    ter Linde, J.J., Liang, H., Davis, R.W., Steensma, H.Y., van Dijken, J.P. & Pronk, J.T. J Bacteriol 181, 7409-13 (1999). [PubMed]
  162. Genome-wide mapping with biallelic markers in Arabidopsis thaliana.
    Cho, R.J., Mindrinos, M., Richards, D.R., Sapolsky, R.J., Anderson, M., Drenkard, E., Dewdney, J., Reuber, T.L., Stammers, M., Federspiel, N., Theologis, A., Yang, W.H., Hubbell, E., Au, M., Chung, E.Y., Lashkari, D., Lemieux, B., Dean, C., Lipshutz, R.J., Ausubel, F.M., Davis, R.W. & Oefner, P.J. Nat Genet 23, 203-7 (1999). [PubMed]
  163. Whole genome genetic-typing in yeast using high-density oligonucleotide arrays.
    Winzeler, E.A., Lee, B., McCusker, J.H. & Davis, R.W. Parasitology 118 Suppl, S73-80 (1999). [PubMed]
  164. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis.
    Winzeler, E.A., Shoemaker, D.D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J.D., Bussey, H., Chu, A.M., Connelly, C., Davis, K., Dietrich, F., Dow, S.W., El Bakkoury, M., Foury, F., Friend, S.H., Gentalen, E., Giaever, G., Hegemann, J.H., Jones, T., Laub, M., Liao, H., Davis, R.W. & et al. Science 285, 901-6 (1999). [PubMed]
  165. Fluorescence-based expression monitoring using microarrays.
    Winzeler, E.A., Schena, M. & Davis, R.W. Methods Enzymol 306, 3-18 (1999). [PubMed]
  166. An automated sample preparation system for large-scale DNA sequencing.
    Marziali, A., Willis, T.D., Federspiel, N.A. & Davis, R.W. Genome Res 9, 457-62 (1999). [PubMed]
  167. Comparative genomes of Chlamydia pneumoniae and C. trachomatis.
    Kalman, S., Mitchell, W., Marathe, R., Lammel, C., Fan, J., Hyman, R.W., Olinger, L., Grimwood, J., Davis, R.W. & Stephens, R.S. Nat Genet 21, 385-9 (1999). [PubMed]
  168. Distribution of haplotypes from a chromosome 21 region distinguishes multiple prehistoric human migrations.
    Jin, L., Underhill, P.A., Doctor, V., Davis, R.W., Shen, P., Cavalli-Sforza, L.L. & Oefner, P.J. Proc Natl Acad Sci U S A 96, 3796-800 (1999). [PubMed]
  169. The mouse mahogany locus encodes a transmembrane form of human attractin.
    Gunn, T.M., Miller, K.A., He, L., Hyman, R.W., Davis, R.W., Azarani, A., Schlossman, S.F., Duke-Cohan, J.S. & Barsh, G.S. Nature 398, 152-6 (1999). [PubMed]
  170. Genomic profiling of drug sensitivities via induced haploinsufficiency.
    Giaever, G., Shoemaker, D.D., Jones, T.W., Liang, H., Winzeler, E.A., Astromoff, A. & Davis, R.W. Nat Genet 21, 278-83 (1999). [PubMed]
  171. On the in vivo function of the RecA ATPase.
    Campbell, M.J. & Davis, R.W. J Mol Biol 286, 437-45 (1999). [PubMed]
  172. Toxic mutations in the recA gene of E. coli prevent proper chromosome segregation.
    Campbell, M.J. & Davis, R.W. J Mol Biol 286, 417-35 (1999). [PubMed]
  173. An arrayable flow-through microcentrifuge for high-throughput instrumentation.
    Marziali, A., Willis, T.D. & Davis, R.W. Proc Natl Acad Sci U S A 96, 61-6 (1999). [PubMed]
  174. Plasmodium falciparum 3D7 chromosome 12 YAC B8-95 genomic sequence. GenBank: accession number AC006281.
    Hyman, R.W., Fung, E., Qin, F., Tomaki, T., Kurdi, O., Davis, R.W. (1999).
  175. Plasmodium falciparium 3D7 chromosome 12 YAC 614 genomic sequence. GenBank: accession number AC006279.
    Hyman, R.W., Fung, E., Qin, F., Tomaki, T., Kurdi, O., Davis, R.W. (1999).
  176. Plasmodium falciparum 3D7 chromosome 12 YAC 724 genomic sequence. GenBank: accession number AC006280.
    Hyman, R.W., Fung, E., Qin, F., Tomaki, T., Kurdi, O., Davis, R.W. (1999).
  177. Genes, Genomes and Chips, in DNA Microarrays: A Practical Approach.
    Schena, M., Davis, R.W. (ed. Schena, M.) 1-16 (Oxford University Press, Oxford, United Kingdom, 1999).
  178. Parallel analysis with Biological Chips.
    Schena, M., Davis, R.W. in PCR Applications 445-456 (Academic Press, 1999).
  179. Y-Chromosome evidence for a northward migration of modern humans into Eastern Asia during the last Ice Age.
    Su, B., Xiao, J., Underhill, P., Deka, R., Zhang, W., Akey, J., Huang, W., Shen, D., Lu, D., Luo, J., Chu, J., Tan, J., Shen, P., Davis, R., Cavalli-Sforza, L., Chakraborty, R., Xiong, M., Du, R., Oefner, P., Chen, Z. & Jin, L. Am J Hum Genet 65, 1718-24 (1999). [PubMed]
  180. A low rate of nucleotide changes in Escherichia coli K-12 estimated from a comparison of the genome sequences between two different substrains.
    Itoh T, Okayama T, Hashimoto H, Takeda J, Davis RW, Mori H, Gojobori T. FEBS Lett. 1999 Apr 30;450(1-2):72-6. [PubMed]
  181. Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis.
    Stephens, R.S., Kalman, S., Lammel, C., Fan, J., Marathe, R., Aravind, L., Mitchell, W., Olinger, L., Tatusov, R.L., Zhao, Q., Koonin, E.V. & Davis, R.W. Science 282, 754-9 (1998). [PubMed]
  182. An automated hydrodynamic process for controlled, unbiased DNA shearing.
    Thorstenson, Y.R., Hunicke-Smith, S.P., Oefner, P.J. & Davis, R.W. Genome Res 8, 848-55 (1998). [PubMed]
  183. Direct allelic variation scanning of the yeast genome.
    Winzeler, E.A., Richards, D.R., Conway, A.R., Goldstein, A.L., Kalman, S., McCullough, M.J., McCusker, J.H., Stevens, D.A., Wodicka, L., Lockhart, D.J. & Davis, R.W. Science 281, 1194-7 (1998). [PubMed]
  184. A genome-wide transcriptional analysis of the mitotic cell cycle.
    Cho, R.J., Campbell, M.J., Winzeler, E.A., Steinmetz, L., Conway, A., Wodicka, L., Wolfsberg, T.G., Gabrielian, A.E., Landsman, D., Lockhart, D.J. & Davis, R.W. Mol Cell 2, 65-73 (1998). [PubMed]
  185. Microarrays: biotechnology's discovery platform for functional genomics.
    Schena, M., Heller, R.A., Theriault, T.P., Konrad, K., Lachenmeier, E. & Davis, R.W. Trends Biotechnol 16, 301-6 (1998). [PubMed]
  186. Mapping cloned sequences on YACs.
    Agyare, F.D., Lagos, G., Lashkari, D., Davis, R.W. & Lemieux, B. Methods Mol Biol 82, 199-208 (1998). [no abstract available]
  187. Parallel analysis of genetic selections using whole genome oligonucleotide arrays.
    Cho, R.J., Fromont-Racine, M., Wodicka, L., Feierbach, B., Stearns, T., Legrain, P., Lockhart, D.J. & Davis, R.W. Proc Natl Acad Sci U S A 95, 3752-7 (1998). [PubMed]
  188. Plasmodium falciparum 3D7 chromosome 12 PFYAC812 genomic sequence. GenBank: accession number AC004153.
    Hyman, R.W., Qin, F., Fung, E.L., Conway, A.B., Davis, R.W. (1998).
  189. Plasmodium falciparum 3D7 chromosome 12 PFYAC293 genomic sequence. GenBank: accession number AC004157.
    Hyman, R.W., Qin, F., Fung, E.L., Conway, A.B., Davis, R.W. (1998).
  190. Plasmodium falciparum 3D7 chromosome 12 YAC 812 genomic sequence. GenBank: accession number AC004153.
    Hyman, R.W., Qin, F., Fung, E., Conway, A., Davis, R.W. (1998).
  191. Plasmodium falciparum 3D7 chromosome 12 YAC 69 genomic sequence. GenBank: accession number AC004688.
    Hyman, R.W., Qin, F., Fung, E., Conway, A., Davis, R.W. (1998).
  192. Plasmodium falciparum 3D7 chromosome 12 YAC 588 genomic sequence. GenBank: accession number AC004710.
    Hyman, R.W., Qin, F., Fung, E., Conway, A., Davis, R.W. (1998).
  193. Plasmodium falciparum 3D7 chromosome 12 YAC 1122 genomic sequence. GenBank: accession number AC004709. Hyman, R.W., Qin, F., Fung, E., Conway, A., Davis, R.W.(1998).
  194. Plasmodium falciparum 3D7 chromosome 12 YAC B8-420 genomic sequence. GenBank: accession number AC005140.
    Hyman, R.W., Fung, E., Qin, F., Conway, A., Davis, Ronald W. (1998).
  195. Plasmodium falciparum 3D7 chromosome 12 YAC 336 genomic sequence. GenBank: accession number AC005139.
    Hyman, R.W., Fung, E., Qin, F., Conway, A., Davis, R.W. (1998).
  196. Plasmodium falciparum 3D7 chromosome 12 YAC 492 genomic sequence. GenBank: accession number AC005308.
    Hyman, R.W., Fung, E., Qin, F., Conway, A., Davis, R.W. (1998).
  197. Plasmodium falciparum 3D7 chromosome 12 YAC 1383 genomic sequence. GenBank: accession number AC005504.
    Hyman, R.W., Fung, E., Qin, F., Conway, A.B., Davis, R.W. (1998).
  198. Plasmodium falciparum 3D7 chromosome 12 YAC 181 genomic sequence. GenBank: accession number AC005505.
    Hyman, R.W., Qin, F., Fung, E.L., Conway, A.B., Davis, R.W. (1998).
  199. Plasmodium falciparum 3D7 chromosome 12 YAC 357 genomic sequence. GenBank: accession number AC005506.
    Hyman, R.W., Qin, F., Fung, E.L., Conway, A.B., Davis, R.W. (1998).
  200. Plasmodium falciparum 3D7 chromosome 12 YAC B8-628 genomic sequence. GenBank: accession number AC005507.
    Hyman, R.W., Qin, F., Fung, E.L., Conway, A.B., Davis, R.W. (1998).
  201. Panorama of Y chromosome SNP haplotype diversity in Pakistan.
    Underhill, P.A., Mehdi, S.Q., Cavalli-Sforza, L.L., Davis, R.W., Oefner, P.J. Am. J. Hum. Genet 63 [Suppl.], A223 (1998). [no abstract available]
  202. Functional analysis of the yeast genome.
    Winzeler, E.A. & Davis, R.W. Curr Opin Genet Dev 7, 771-6 (1997). [PubMed]
  203. Yeast microarrays for genome wide parallel genetic and gene expression analysis.
    Lashkari, D.A., DeRisi, J.L., McCusker, J.H., Namath, A.F., Gentile, C., Hwang, S.Y., Brown, P.O. & Davis, R.W. Proc Natl Acad Sci U S A 94, 13057-62 (1997). [PubMed]
  204. Detection of numerous Y chromosome biallelic polymorphisms by denaturing high-performance liquid chromatography.
    Underhill, P.A., Jin, L., Lin, A.A., Mehdi, S.Q., Jenkins, T., Vollrath, D., Davis, R.W., Cavalli-Sforza, L.L. & Oefner, P.J. Genome Res 7, 996-1005 (1997). [PubMed]
  205. Whole genome analysis: experimental access to all genome sequenced segments through larger-scale efficient oligonucleotide synthesis and PCR.
    Lashkari, D.A., McCusker, J.H. & Davis, R.W. Proc Natl Acad Sci U S A 94, 8945-7 (1997). [PubMed]
  206. Ca(2+)-activated anion channels and membrane depolarizations induced by blue light and cold in Arabidopsis seedlings.
    Lewis, B.D., Karlin-Neumann, G., Davis, R.W. & Spalding, E.P. Plant Physiol 11, 1327-34 (1997). [PubMed]
  207. Application of DNA typing methods and genetic analysis to epidemiology and taxonomy of Saccharomyces isolates.
    Clemons, K.V., Park, P., McCusker, J.H., McCullough, M.J., Davis, R.W. & Stevens, D.A. J Clin Microbiol 35, 1822-8 (1997). [PubMed]
  208. The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI.
    Bussey, H., Storms, R.K., Ahmed, A., Albermann, K., Allen, E., Ansorge, W., Araujo, R., Aparicio, A., Barrell, B., Badcock, K., Benes, V., Botstein, D., Bowman, S., Bruckner, M., Carpenter, J., Cherry, J.M., Chung, E., Churcher, C., Coster, F., Davis, K., Davis, R.W., Dietrich, F.S., Delius, H., DiPaolo, T., Hani, J. & et al. Nature 387, 103-5 (1997). [PubMed]
  209. Discovery and analysis of inflammatory disease-related genes using cDNA microarrays.
    Heller, R.A., Schena, M., Chai, A., Shalon, D., Bedilion, T., Gilmore, J., Woolley, D.E. & Davis, R.W. Proc Natl Acad Sci U S A 94, 2150-5 (1997). [PubMed]
  210. Mapping expressed sequence tag sites on yeast artificial chromosome clones of Arabidopsis thaliana DNA.
    Agyare, F.D., Lashkari, D.A., Lagos, A., Namath, A.F., Lagos, G., Davis, R.W. & Lemieux, B. Genome Res 7, 1-9 (1997). [PubMed]
  211. The nucleotide sequence of Saccharomyces cerevisiae chromosome V.
    Dietrich, F.S., Mulligan, J., Hennessy, K., Yelton, M.A., Allen, E., Araujo, R., Aviles, E., Berno, A., Brennan, T., Carpenter, J., Chen, E., Cherry, J.M., Chung, E., Duncan, M., Guzman, E., Hartzell, G., Hunicke-Smith, S., Hyman, R.W., Kayser, A., Komp, C., Lashkari, D., Lew, H., Lin, D., Mosedale, D., Nakahara, K., Namath, A., Norgren, R. Oefner, P., Oh, C., Petel, F.X., Roberts, D., Sehl, P., Schramm, S., Shogren, T., Smith, V., Taylor, P., Wei, Y., Botstein, D., Davis, R.W. Nature 387, 78-81 (1997). [PubMed]
  212. Automation for the Arabidopsis genome sequencing project.
    Marziali, A., Federspiel, N., and Davis, R.W. Trends in Plant Science 2, 71-74 (1997).
  213. Escherichia coli chromosome minutes 9-11. Genbank: accession number U82664.
    Roberts, D., Allen, E., Araujo, R., Aparicio, A., Chung, E., Davis, K., Duncan, M., Federspiel, N., Hyman, R. W., Kalman, S., Komp, C., Kurdi, O., Lew, H., Lin, D., Namath, A., Oefner, P., Schramm, S., Davis, R.W. (1997).
  214. Escherichia coli chromosome minutes 9-12. Genbank: accession number U82598.
    Chung, E., Allen, E., Araujo,R., Aparicio, A., Davis, K., Duncan, M., Federspiel, N., Hyman, R.W., Kalman, S., Komp, C., Kurdi, O., Lew, H., Lin, D., Namath, A., Oefner, P., Schramm, S., Davis, R.W. (1997).
  215. The nucleotide sequence of chromosome IV.
    Jacq, C., Davis, R.W., et al. (144 co-authors). Nature 387 suppl, 75-78 (1997).
  216. Human chromosome Y cosmid 30H9 genomic sequence. GenBank: accession number AC003031.
    Shen, P., Chung, E., Hyman, R.W., Roberts, D., Schramm, S., Vollrath, D., Davis, R.W. (1997).
  217. Human chromosome Y cosmid 7A1 genomic sequence. GenBank: accession number AC003032.
    Thorstenson, Y., Au, M., Chung, E., Hyman, R., Schramm, S., Vollrath, D., Davis, R.W. (1997).
  218. Human chromosome Y cosmid 16E4 genomic sequence. GenBank: accession number AC003094.
    Hyman, R.W., Chung, E., Kurdi, O., Roberts, D., Schramm, S., Vollrath, D., Davis, R.W. (1997).
  219. Human chromosome Y cosmid 54E8 genomic sequence. GenBank: accession number AC003095.
    Hyman, R.W., Vollrath, D., Davis, R.W. (1997).
  220. Human chromosome Y cosmid 56B5 genomic sequence. GenBank: accession number AC003097.
    Lin, D., Chung, E., Hyman, R.W., Schramm, S., Vollrath, D., Davis, R.W. (1997).
  221. Human chromosome 1 BAC 13512 genomic sequence. GenBank: accession number AC003115.
    Hyman, R.W., Babb, V., Chung, E., Kurdi, O., Rexan, M., Vollrath, D., Davis, R.W. (1997).
  222. Human chromosome 1 BAC 308G1 genomic sequence. GenBank: accession number AC003117.
    Fan, J., Babb, V., Hyman, R.W., Kalman, S., Kurdi, O., Marathe, R., Rexan, M., Vollrath, D., Davis, R.W. (1997).
  223. Human chromosome 1 BAC 89N6 genomic sequence. GenBank: accession number AC003118.
    Chung, E., Babb, V., Hyman, R.W., Kurdi, O., Rexan, M., Vollrath, D., Davis, Ronald W. (1997).
  224. Autosomal DNA haplotypes distinguish ancient human migrations.
    Jin, L., Underhill, P.A., Doctor, V., Cavalli-Sforza, L.L., Davis, R., Oefner, P.J. Am. J. Hum. Genet 61 [Suppl.], A201 (1997).
  225. An African origin of human Y chromosomes.
    Underhill, P.A., Jin, L., Lin, A., Chan, C., Shen, P., Kauffman, E., Choi, L., Hurlbut, A., Cavalli-Sforza, L.L., Mehdi, S.Q., Jenkins, T., Seielstad, M.T., Wells, R.S., Ibrahim, M., Vollrath, D., Hyman, R., Davis, R., Oefner, P.J. Am. J. Hum. Genet 61 [Suppl.], A18 (1997)
  226. CDP1, a novel Saccharomyces cerevisiae gene required for proper nuclear division and chromosome segregation.
    Foreman, P.K. & Davis, R.W. Genetics 144, 1387-97 (1996). [PubMed]
  227. Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy.
    Shoemaker, D.D., Lashkari, D.A., Morris, D., Mittmann, M. & Davis, R.W. Nat Genet 14, 450-6 (1996). [PubMed]
  228. Life with 6000 genes.
    Goffeau, A., Barrell, B.G., Bussey, H., Davis, R.W., Dujon, B., Feldmann, H., Galibert, F., Hoheisel, J.D., Jacq, C., Johnston, M., Louis, E.J., Mewes, H.W., Murakami, Y., Philippsen, P., Tettelin, H. & Oliver, S.G. Science 274, 546, 563-7 (1996). [PubMed]
  229. Efficient random subcloning of DNA sheared in a recirculating point-sink flow system.
    Oefner, P.J., Hunicke-Smith, S.P., Chiang, L., Dietrich, F., Mulligan, J. & Davis, R.W. Nucleic Acids Res 24, 3879-86 (1996). [PubMed]
  230. Parallel human genome analysis: microarray-based expression monitoring of 1000 genes.
    Schena, M., Shalon, D., Heller, R., Chai, A., Brown, P.O. & Davis, R.W. Proc Natl Acad Sci U S A 93, 10614-9 (1996). [PubMed]
  231. Application of DNA typing methods and genetic analysis to epidemiology and taxonomy of Saccharomyces.
    Clemons, K.V., Park, P.S., McCusker, J.H., Davis, R.W., Stevens, D.A. J. Infec. Dis (1996).
  232. After period of gestation, DNA chips coming of age.
    O’Connell, J.P., Davis, Ronald W., Chee, M., Lockhart, D.J., Fodor, S.P., Collins, F. Chem. & Eng. News (1996).
  233. Yeast Artificial Chromosome (YAC) construction and applications.
    Loehrlein, C., Davis, Ronald W. in Encyclopedia of Molecular Biology and Molecular Medicine, Vol. 6 (ed. Meyers, R.A.) 291-302 (VCH Publishers, Weinheim, 1996).
  234. Saccharomyces cerevisiae chromosome XVI left arm from MMN to PH085. Genbank: accession number U44030.
    Dietrich, F.S., Allen, E., Araujo, R., Aparicio, A., Carpenter, J., Cherry, J.M., Chung, E., E., Davis, K., Duncan, M., Hunicke-Smith, S., Hyman, R.W., Kalman, S., Komp, C., Kurdi, O., Lashkari, D., Lew, H., Lin, A., Lin, D., Marathe, R., Mirtipati, S., Namath, A., Oefner, P., Petel, F., Roberts, D., Schramm, S., Schroeder, M., Botstein, D., Davis, Ronald W. (1996).
  235. Escherichia coli chromosome minutes 4-6. Genbank: accession number U70214.
    Schramm, S., Duncan, M., Allen, E., Araujo, R., Aparicio, A., Chung, E., Davis, K., Federspiel, N., Hyman, R.W., Kalman, S., Komp, C., Kurdi, O., Lashkari, D., Lew, H., Lin, D., Namath, A., Oefner, P., Roberts, D., Davis, Ronald W. (1996).
  236. Escherichia coli chromosome minutes 6-8. Genbank: accession number U73857.
    Duncan, M., Allen, E., Araujo, R., Aparicio, A., Chung, E., Davis, K., Federspiel, N., Hyman, R.W., Kalman, S., Komp, C., Kurdi, O., Lew, H., Lin, D., Namath, A., Oefner, P., Roberts, D., Schramm, S., Davis, Ronald W. (1996).
  237. Amassing a wealth of Y chromosome polymorphisms for evolutionary studies.
    Underhill, P.A., Jin, L., Cavalli-Sforza, L.L., Davis, R., Oefner, P.J. Am. J. Hum. Genet 59 [Suppl.], A30 (1996).
  238. Sequencing the Chlamydia trachomatis Genome.
    Kalman, S.S., Araujo, R., Chung, E., Dietrich, F., Komp, C., Otto, G., Lew, H., Lin, D., Marathe, R., Mirthipati, S., Namath, A., Oefner, P., Davis, R.W., Stephens, R. Microbial & Comparative Genomics 1, 236 (1996).
  239. Mapping and Sequencing of the Arabidopsis Genome.
    Dewar, K., Dunn, P.J., Li, Y.-P., Kim, C.J., Ecker, J.R., Federspiel, N.A., Dietrich, F., Marziali, A., Oefner, P., Norgren, R., Davis, R.W., Vysotskaia, V., Yu, Q., Theologis, A. Microbial & Comparative Genomics 1, 204 (1996).
  240. High-Throughput Differential Genome Analysis by Denaturing HPLC.
    Oefner, P.J., Underhill, P.A., Grill, E.A., Cho, R.J., Jin, L., Cavalli-Sforza, L.L., Davis, R.W. Microbial & Comparative Genomics 1, 245 (1996).
  241. Electrophoresis using contour-clamped electric fields.
    Chu, G., Vollrath, D., Davis, R. (The Board of Trustees of the Leland Stanford Junior University, USA, 1996).
  242. Quantitative monitoring of gene expression patterns with a complementary DNA microarray.
    Schena, M., Shalon, D., Davis, R.W. & Brown, P.O. Science 270, 467-70 (1995). [PubMed]
  243. An automated multiplex oligonucleotide synthesizer: development of high-throughput, low-cost DNA synthesis.
    Lashkari, D.A., Hunicke-Smith, S.P., Norgren, R.M., Davis, R.W. & Brennan, T. Proc Natl Acad Sci U S A 92, 7912-5 (1995). [PubMed]
  244. Sliding-plate gel caster.
    Lashkari, D.A., Norgren, R.M. & Davis, R.W. Biotechniques 18, 625-6 (1995). [no abstract available]
  245. Pathogenicity of Saccharomyces cerevisiae in complement factor five-deficient mice.
    Byron, J.K., Clemons, K.V., McCusker, J.H., Davis, R.W. & Stevens, D.A. Infect Immun 63, 478-85 (1995). [PubMed]
  246. The sequence of Saccharomyces cerevisiae chromosome IV right. Genbank: accession numbers U33057, U33050, U33007, U32274, and U43834.
    Dietrich, F.S., Mulligan, J., Hennesy, K., Allen, E., Araujo, R., Aviles, E., Berno, A., Brennan, T., Carpenter, J., Chen, E., Cherry, J.M., Chung, E., Duncan, M., Guzman, E., Hartzell, G., Hunicke-Smith, S., Hyman, R.W., Kayser, A., Komp, C., Lashkari, D., Lew, H., Lin, D., Mosedale, D., Nakahara, K., Namath, A., Norgren, R., Oefner, P., Oh, C., Petel, F., Roberts, D., Sehl, P., Schramm, S., Shogren, T., Smith, V., Taylor, P., Wei, Y., Yelton, M., Botstein, D., Davis, Ronald W. (1995).
  247. Saccharomyces cerevisiae virulence phenotype as determined with CD-1 mice is associated with the ability to grow at 42 degrees C and form pseudohyphae.
    McCusker, J.H., Clemons, K.V., Stevens, D.A. & Davis, R.W. Infect Immun 62, 5447-55 (1994). [PubMed]
  248. The TTG gene is required to specify epidermal cell fate and cell patterning in the Arabidopsis root.
    Galway, M.E., Masucci, J.D., Lloyd, A.M., Walbot, V., Davis, R.W. & Schiefelbein, J.W. Dev Biol 166, 740-54 (1994). [PubMed]
  249. Epidermal cell fate determination in Arabidopsis: patterns defined by a steroid-inducible regulator
    Lloyd, A.M., Schena, M., Walbot, V. & Davis, R.W. . Science 266, 436-9 (1994). [PubMed]
  250. Structure of homeobox-leucine zipper genes suggests a model for the evolution of gene families.
    Schena, M. & Davis, R.W. Proc Natl Acad Sci U S A 91, 8393-7 (1994). [PubMed]
  251. Cloning vectors for the synthesis of epitope-tagged, truncated and chimeric proteins in Saccharomyces cerevisiae.
    Foreman, P.K. & Davis, R.W. Gene 144, 63-8 (1994). [PubMed]
  252. Tetrad analysis possible in Arabidopsis with mutation of the QUARTET (QRT) genes.
    Preuss, D., Rhee, S.Y. & Davis, R.W. Science 264, 1458-60 (1994). [PubMed]
  253. Genetic characterization of pathogenic Saccharomyces cerevisiae isolates.
    McCusker, J.H., Clemons, K.V., Stevens, D.A. & Davis, R.W. Genetics 136, 1261-9 (1994). [PubMed]
  254. Functional expression of the yeast FLP/FRT site-specific recombination system in Nicotiana tabacum.
    Lloyd, A.M. & Davis, R.W. Mol Gen Genet 242, 653-7 (1994). [PubMed]
  255. Comparative pathogenesis of clinical and nonclinical isolates of Saccharomyces cerevisiae.
    Clemons KV, McCusker JH, Davis RW, Stevens DA. J Infect Dis. 1994 Apr;169(4):859-67. [PubMed]
  256. The complete sequence of Saccharomyces cerevisiae chromosome V. Genbank, : accession numbers U18795, U18779, U18530, U18778, U18796, U18813, U18814, U18839, U18916, U18917, and U18922.
    Dietrich, F.S., Mulligan, J., Hennesy, K., Allen, E., Araujo, R., Aviles, E., Berno, A., Brennan, T., Carpenter, J., Chen, E., Cherry, J.M., Chung, E., Duncan, M., Guzman, E., Hartzell, G., Hunicke-Smith, S., Hyman, R.W., Kayser, A., Komp, C., Lashkari, D., Lew, H., Lin, D., Mosedale, D., Nakahara, K., Namath, A., Norgren, R., Oefner, P., Oh, C., Petel, F., Roberts, D., Sehl, P., Schramm, S., Shogren, T., Smith, V., Taylor, P., Wei, Y., Yelton, M., Botstein, D., Davis, Ronald W. (1994)
  257. Point mutations that separate the role of Saccharomyces cerevisiae centromere binding factor 1 in chromosome segregation from its role in transcriptional activation.
    Foreman, P.K. & Davis, R.W. Genetics 135, 287-96 (1993). [PubMed]
  258. A conditional sterile mutation eliminates surface components from Arabidopsis pollen and disrupts cell signaling during fertilization.
    Preuss, D., Lemieux, B., Yen, G. & Davis, R.W. Genes Dev 7, 974-85 (1993). [PubMed]
  259. The HAT4 gene of Arabidopsis encodes a developmental regulator.
    Schena, M., Lloyd, A.M. & Davis, R.W. Genes Dev 7, 367-79 (1993). [PubMed]
  260. A dominant truncation allele identifies a gene, STE20, that encodes a putative protein kinase necessary for mating in Saccharomyces cerevisiae.
    Ramer, S.W. & Davis, R.W. Proc Natl Acad Sci U S A 90, 452-6 (1993). [PubMed]
  261. Arabidopsis and Nicotiana anthocyanin production activated by maize regulators R and C1.
    Lloyd, A.M., Walbot, V. & Davis, R.W. Science 258, 1773-5 (1992). [PubMed]
  262. Dominant genetics using a yeast genomic library under the control of a strong inducible promoter.
    Ramer, S.W., Elledge, S.J. & Davis, R.W. Proc Natl Acad Sci U S A 89, 11589-93 (1992). [PubMed]
  263. ATP hydrolysis and the displaced strand are two factors that determine the polarity of RecA-promoted DNA strand exchange.
    Konforti, B.B. & Davis, R.W. J Mol Biol 227, 38-53 (1992). [PubMed]
  264. HD-Zip proteins: members of an Arabidopsis homeodomain protein superfamily.
    Schena, M. & Davis, R.W. Proc Natl Acad Sci U S A 89, 3894-8 (1992). [PubMed]
  265. Functional genetic expression of eukaryotic DNA in Escherichia coli. 1976.
    Struhl, K., Cameron, J.R. & Davis, R.W. Biotechnology 24, 353-7 (1992). [no abstract available]
  266. Electophoresis using contour-clamped electric fields.
    Chu, G., Vollrath, D., Davis, R. (The Board of Trustees of the Leland Stanford Junior University, USA, 1992)
  267. A steroid-inducible gene expression system for plant cells.
    Schena, M., Lloyd, A.M. & Davis, R.W. Proc Natl Acad Sci U S A 88, 10421-5 (1991). [PubMed]
  268. The use of proline as a nitrogen source causes hypersensitivity to, and allows more economical use of 5FOA in Saccharomyces cerevisiae.
    McCusker, J.H. & Davis, R.W. Yeast 7, 607-8 (1991). [PubMed]
  269. Polymerase chain reaction mapping of yeast GAL7 mRNA polyadenylation sites demonstrates that 3' end processing in vitro faithfully reproduces the 3' ends observed in vivo.
    Sadhale, P.P., Sapolsky, R., Davis, R.W., Butler, J.S. & Platt, T. Nucleic Acids Res 19, 3683-8 (1991). [PubMed]
  270. DNA substrate requirements for stable joint molecule formation by the RecA and single-stranded DNA-binding proteins of Escherichia coli.
    Konforti, B.B. & Davis, R.W. J Biol Chem 266, 10112-21 (1991). [PubMed]
  271. The Saccharomyces cerevisiae RPB4 gene is tightly linked to the TIF2 gene.
    Foreman, P.K., Davis, R.W. & Sachs, A.B. Nucleic Acids Res 19, 2781 (1991). [PubMed]
  272. Lambda YES: a multifunctional cDNA expression vector for the isolation of genes by complementation of yeast and Escherichia coli mutations.
    Elledge, S.J., Mulligan, J.T., Ramer, S.W., Spottswood, M. & Davis, R.W. Proc Natl Acad Sci U S A 88, 1731-5 (1991). [PubMed]
  273. Gene isolation with lambda gt11 system.
    Young, R.A. & Davis, R.W. Methods Enzymol 194, 230-8 (1991). [no abstract available]
  274. Yeast centromere binding protein CBF1, of the helix-loop-helix protein family, is required for chromosome stability and methionine prototrophy.
    Cai, M. & Davis, R.W. Cell 61, 437-46 (1990). [PubMed]
  275. Two genes differentially regulated in the cell cycle and by DNA-damaging agents encode alternative regulatory subunits of ribonucleotide reductase.
    Elledge, S.J. & Davis, R.W. Genes Dev 4, 740-51 (1990). [PubMed]
  276. The preference for a 3' homologous end is intrinsic to RecA-promoted strand exchange.
    Konforti, B.B. & Davis, R.W. J Biol Chem 265, 6916-20 (1990). [PubMed]
  277. Translation initiation and ribosomal biogenesis: involvement of a putative rRNA helicase and RPL46.
    Sachs, A.B. & Davis, R.W. Science 247, 1077-9 (1990). [PubMed]
  278. Rain-, wind-, and touch-induced expression of calmodulin and calmodulin-related genes in Arabidopsis.
    Braam, J. & Davis, R.W. Cell 60, 357-64 (1990). [PubMed]
  279. Gene targeting at the human CD4 locus by epitope addition.
    Jasin, M., Elledge, S.J., Davis, R.W. & Berg, P. Gene targeting at the human CD4 locus by epitope addition. Genes Dev 4, 157-66 (1990). [PubMed]
  280. Identification of the DNA damage-responsive element of RNR2 and evidence that four distinct cellular factors bind it.
    Elledge, S.J. & Davis, R.W. Mol Cell Biol 9, 5373-86 (1989). [PubMed]
  281. DNA damage induction of ribonucleotide reductase.
    Elledge, S.J. & Davis, R.W. Mol Cell Biol 9, 4932-40 (1989). [PubMed]
  282. The poly(A) binding protein is required for poly(A) shortening and 60S ribosomal subunit-dependent translation initiation.
    Sachs, A.B. & Davis, R.W. Cell 58, 857-67 (1989). [PubMed]
  283. Rapid screening of a human genomic library in yeast artificial chromosomes for single-copy sequences.
    Traver, C.N., Klapholz, S., Hyman, R.W. & Davis, R.W. Proc Natl Acad Sci U S A 86, 5898-902 (1989). [PubMed]
  284. Purification of a yeast centromere-binding protein that is able to distinguish single base-pair mutations in its recognition site.
    Cai, M.J. & Davis, R.W. Mol Cell Biol 9, 2544-50 (1989). [PubMed]
  285. Genetic selection for genes encoding sequence-specific DNA-binding proteins.
    Elledge, S.J., Sugiono, P., Guarente, L. & Davis, R.W. Proc Natl Acad Sci U S A 86, 3689-93 (1989). [PubMed]
  286. Position and density effects on repression by stationary and mobile DNA-binding proteins.
    Elledge, S.J. & Davis, R.W. Genes Dev 3, 185-97 (1989). [PubMed]
  287. Strategies for genetic modification of parasites.
    Davis, R.W. Ann N Y Acad Sci 569, 104-17 (1989). [no abstract available]
  288. Molecular Analysis of Nitrate Regulation of Nitrate Reductase in Squash and Arabidopsis.
    Crawford, N.M., Davis, R.W. in Molecular and Genetic Aspects of Nitrate Assimilation (ed. Wray, J.L., Kinghorn, James R.) (Oxford Science Publications, 1989
  289. A family of versatile centromeric vectors designed for use in the sectoring-shuffle mutagenesis assay in Saccharomyces cerevisiae.
    Elledge, S.J. & Davis, R.W. Gene 70, 303-12 (1988). [PubMed]
  290. Direction of chromosome rearrangements in Saccharomyces cerevisiae by use of his3 recombinational substrates.
    Fasullo, M.T. & Davis, R.W. Mol Cell Biol 8, 4370-80 (1988). [PubMed]
  291. SPA1: a gene important for chromosome segregation and other mitotic functions in S. cerevisiae.
    Snyder, M. & Davis, R.W. Cell 54, 743-54 (1988). [PubMed]
  292. Physical mapping of large DNA by chromosome fragmentation.
    Vollrath, D., Davis, R.W., Connelly, C. & Hieter, P. Proc Natl Acad Sci U S A 85, 6027-31 (1988). [PubMed]
  293. Sequence and nitrate regulation of the Arabidopsis thaliana mRNA encoding nitrate reductase, a metalloflavoprotein with three functional domains.
    Crawford, N.M., Smith, M., Bellissimo, D. & Davis, R.W. Proc Natl Acad Sci U S A 85, 5006-10 (1988). [PubMed]
  294. Tandem array of human visual pigment genes at Xq28.
    Vollrath, D., Nathans, J. & Davis, R.W. Science 240, 1669-72 (1988). [PubMed]
  295. Transcription interferes with elements important for chromosome maintenance in Saccharomyces cerevisiae.
    Snyder, M., Sapolsky, R.J. & Davis, R.W. Mol Cell Biol 8, 2184-94 (1988). [PubMed]
  296. An electrophoretic karyotype of Neurospora crassa.
    Orbach, M.J., Vollrath, D., Davis, R.W. & Yanofsky, C. Mol Cell Biol 8, 1469-73 (1988). [PubMed]
  297. Defining Sequences that Protect Elements Important for Chromosome Maintenance from Transcriptional Interference in Saccharomyces Cerevisiae.
    Snyder, M., Sapolsky, R.J., Davis, R.W. Mol. And Cell. Biol 8, 2184-2194 (1988).
  298. Genomic Organization of Two Families of Highly Repeated Nuclear DNA Sequences of Maize Selected Autonomous Replicating Activity in Yeast.
    Berlani, R., Davis, R.W., Walbot, V. Plant Mol. Biol 11(1988).
  299. Sequence Analysis of Three Fragments of Maize Nuclear DNA which Replicate Autonomously in Yeast.
    Berlani, R.E., Walbot, V., Davis, R.W. Plant Mol. Biol 11(1988).
  300. Plant Nitrate Reductase is a Tripartite Electron Transfer Protein That Belongs to the Cytochrome b5 Superfamily of Enzymes.
    Crawford, N.M., Davis, R.W. Current Topics in Plant Biochemistry and Physiology 7, 16-25 (1988).
  301. Resolution of DNA molecules greater than 5 megabases by contour-clamped homogeneous electric fields.
    Vollrath, D. & Davis, R.W. Nucleic Acids Res 15, 7865-76 (1987). [PubMed]
  302. A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA binding and cell viability.
    Sachs, A.B., Davis, R.W. & Kornberg, R.D. Mol Cell Biol 7, 3268-76 (1987). [PubMed]
  303. Recombinational substrates designed to study recombination between unique and repetitive sequences in vivo.
    Fasullo, M.T. & Davis, R.W. Proc Natl Acad Sci U S A 84, 6215-9 (1987). [PubMed]
  304. 3' homologous free ends are required for stable joint molecule formation by the RecA and single-stranded binding proteins of Escherichia coli.
    Konforti, B.B. & Davis, R.W. Proc Natl Acad Sci U S A 84, 690-4 (1987). [PubMed]
  305. Lambda gt 11: gene isolation with antibody probes and other applications.
    Snyder, M., Elledge, S., Sweetser, D., Young, R.A. & Davis, R.W. Methods Enzymol 154, 107-28 (1987). [no abstract available]
  306. Identification and isolation of the gene encoding the small subunit of ribonucleotide reductase from Saccharomyces cerevisiae: DNA damage-inducible gene required for mitotic viability.
    Elledge, S.J. & Davis, R.W. Mol Cell Biol 7, 2783-93 (1987). [PubMed]
  307. Genome Plasticity in Saccharomyces Cerevisiae.
    Davis, R.W., Vollrath, D., Thomas, M., Hieter, P., Snyder, M., Mann, C., Fasullo, M. in Molecular Strategies of Parasitic Invasion 17-27 (Alan R. Liss, Inc, 1987).
  308. Plant Defense Genes are Regulated by Ethylene.
    Ecker, J.R., Davis, R.W. Proc. Natl. Acad. Sci 84, 5202-5206 (1987). [PubMed]
  309. Separation of large DNA molecules by contour-clamped homogeneous electric fields.
    Chu, G., Vollrath, D. & Davis, R.W. Science 234, 1582-5 (1986). [PubMed]
  310. Bent DNA at a yeast autonomously replicating sequence.
    Snyder, M., Buchman, A.R. & Davis, R.W. Nature 324, 87-9 (1986). [PubMed]
  311. Meiotic disjunction of circular minichromosomes in yeast does not require DNA homology.
    Mann, C. & Davis, R.W. Proc Natl Acad Sci U S A 83, 6017-9 (1986). [PubMed]
  312. Rapid mapping of antigenic coding regions and constructing insertion mutations in yeast genes by mini-Tn10 "transplason" mutagenesis.
    Snyder, M., Elledge, S. & Davis, R.W. Proc Natl Acad Sci U S A 83, 730-4 (1986). [PubMed]
  313. Structure and sequence of the centromeric DNA of chromosome 4 in Saccharomyces cerevisiae.
    Mann, C. & Davis, R.W. Mol Cell Biol 6, 241-5 (1986). [PubMed]
  314. Inhibition of Gene Expression in Plant Cells by Expression of Anti-Sense RNA.
    Ecker, J.R., Davis, R.W.Proc. Natl. Acad. Sci 83, 5372-5376 (1986). [PubMed]
  315. Nitrate Reductase from Squash: cDNA Cloning and Nitrate Regulation.
    Crawford, N., Campbell, W.H., Davis, R.W. Proc. Natl. Acad. Sci. 83, 8073-8076 (1986). [PubMed]
  316. In Vitro and In Vivo Manipulation of Very Large DNA Molecules.
    Davis, R.W., Vollrath, D., Chu, G., Fasullo, M., Hieter, P., Thomas, M. In DNA Probes Applications in Genetic and Infectious Disease and Cancer. (Cold Spring Harbor Laboratory, 1986
  317. Isolation of the gene encoding yeast DNA polymerase I.
    Johnson, L.M., Snyder, M., Chang, L.M., Davis, R.W. & Campbell, J.L. Cell 43, 369-77 (1985). [PubMed]
  318. Functional selection and analysis of yeast centromeric DNA.
    Hieter, P., Pridmore, D., Hegemann, J.H., Thomas, M., Davis, R.W. & Philippsen, P. Cell 42, 913-21 (1985). [PubMed]
  319. Genes for the major protein antigens of the leprosy parasite Mycobacterium leprae.
    Young, R.A., Mehra, V., Sweetser, D., Buchanan, T., Clark-Curtiss, J., Davis, R.W. & Bloom, B.R. Nature 316, 450-2 (1985). [PubMed]
  320. Rapid induction of specific mRNAs by auxin in pea epicotyl tissue.
    Theologis, A., Huynh, T.V. & Davis, R.W. J Mol Biol 183, 53-68 (1985). [PubMed]
  321. Dissection of Mycobacterium tuberculosis antigens using recombinant DNA.
    Young, R.A., Bloom, B.R., Grosskinsky, C.M., Ivanyi, J., Thomas, D. & Davis, R.W. Proc Natl Acad Sci U S A 82, 2583-7 (1985). [PubMed]
  322. Mitotic stability of yeast chromosomes: a colony color assay that measures nondisjunction and chromosome loss.
    Hieter, P., Mann, C., Snyder, M. & Davis, R.W. Cell 40, 381-92 (1985). [PubMed]
  323. Construction and Screening cDNA Libraries in lgt10 and lgt11.
    Huynh, T., Young, R.A., Davis, R.W. (D. Glover, ed.), , Vol. 1, p. 49-78 (1985). in DNA Cloning Techniques: A Practical Approach, Vol. 1 (ed. Glover, D.) 49-78 (IRL Press, Oxford, 1985).
  324. Screening lgt11 expression libraries with antibody probes.
    Synder, M., Davis, R.W. in Hybridomas in the Biosciences and Medicine (ed. Springer, T.) 397-406 (Plenum Press, N.Y., 1985).
  325. Immunoscreening lgt11 recombinant DNA expression libraries.
    Young, R.A., Davis, R.W. in Genetic Engineering: Principles and Techniques, Vol. 7 (ed. Setlow, J., Hollaender A.) 29-41 (Plenum Press, N.Y., 1985)
  326. Deletion of plasmid sequences during Saccharomyces cerevisiae transformation.
    Clancy, S., Mann, C., Davis, R.W. & Calos, M.P. J Bacteriol 159, 1065-7 (1984). [PubMed]
  327. Sequences that regulate the divergent GAL1-GAL10 promoter in Saccharomyces cerevisiae.
    Johnston, M. & Davis, R.W. Mol Cell Biol 4, 1440-8 (1984). [PubMed]
  328. Dissection Pathogen Antigens using Recombinant DNA.
    Young, R.A., Davis, R.W. in New Approaches to Vaccine Development 74-79 (Schwabe & Co., AG, Basel, 1984).
  329. New Methods for Molecular DNA Cloning and Chromosome Manipulation.
    Davis, R.W., Young, R.A., Fasullo, M. Prontificia Academia Scientiarum 51, 123-134 (1984).
  330. Yeast RNA polymerase II genes: isolation with antibody probes.
    Young, R.A. & Davis, R.W. Science 222, 778-82 (1983). [PubMed]
  331. Targeted selection of recombinant clones through gene dosage effects.
    Rine, J., Hansen, W., Hardeman, E. & Davis, R.W. Proc Natl Acad Sci U S A 80, 6750-4 (1983). [PubMed]
  332. RNA from the yeast transposable element Ty1 has both ends in the direct repeats, a structure similar to retrovirus RNA.
    Elder, R.T., Loh, E.Y. & Davis, R.W.Proc Natl Acad Sci U S A 80, 2432-6 (1983). [PubMed]
  333. Efficient isolation of genes by using antibody probes.
    Young, R.A. & Davis, R.W. Proc Natl Acad Sci U S A 80, 1194-8 (1983). [PubMed]
  334. Instability of dicentric plasmids in yeast.
    Mann, C. & Davis, R.W. Proc Natl Acad Sci U S A 80, 228-32 (1983). [PubMed]
  335. Reversion of a promoter deletion in yeast.
    Scherer, S., Mann, C. & Davis, R.W. Nature 298, 815-9 (1982). [PubMed]
  336. Centromeric DNA from Saccharomyces cerevisiae.
    Stinchcomb, D.T., Mann, C. & Davis, R.W. J Mol Biol 158, 157-90 (1982). [PubMed]
  337. Zein storage protein gene family of maize. An assessment of heterogeneity with cloned messenger RNA sequences.
    Burr, B., Burr, F.A., St John, T.P., Thomas, M. & Davis, R.W.J Mol Biol 154, 33-49 (1982). [no abstract available]
  338. Principles and Practice of Recombinant DNA Research with Yeast.
    Botstein, D., Davis, R.W. in The Molecular Biology of the Yeast Saccharomyces, Metabolism and Gene Expression. (Cold Spring Harbor Laboratory, 1982).
  339. Recombinant DNA Techniques in Yeast.
    Davis, R.W., Johnston, H.M. in Proceedings of the IVth International Symposium on Genetics of Industrial Microorganisms 153-158 (1982).
  340. Position effects in Saccharomyces cerevisiae.
    Struhl, K. & Davis, R.W. J Mol Biol 152, 569-75 (1981). [no abstract available]
  341. Promotor mutants of the yeast his3 gene.
    Struhl, K. & Davis, R.W. J Mol Biol 152, 553-68 (1981). [no abstract available]
  342. Transcription of the his3 gene region in Saccharomyces cerevisiae.
    Struhl, K. & Davis, R.W. J Mol Biol 152, 535-52 (1981). [no abstract available]
  343. Deletion analysis of the Saccharomyces GAL gene cluster. Transcription from three promoters.
    St John, T.P., Scherer, S., McDonell, M.W. & Davis, R.W. J Mol Biol 152, 317-34 (1981). [no abstract available]
  344. The organization and transcription of the galactose gene cluster of Saccharomyces.
    St John, T.P. & Davis, R.W. J Mol Biol 152, 285-315 (1981). [no abstract available]
  345. Studies on the transposable element Ty1 of yeast. I. RNA homologous to Ty1. II. Recombination and expression of Ty1 and adjacent sequences.
    Elder, R.T., St John, T.P., Stinchcomb, D.T., Davis, R.W. & Scherer, S. Cold Spring Harb Symp Quant Biol 45 Pt 2, 581-91 (1981). [no abstract available]
  346. Recombination of dispersed repeated DNA sequences in yeast.
    Scherer, S. & Davis, R.W. Science 209, 1380-4 (1980). [PubMed]
  347. Conservation and DNA sequence arrangement of the DNA polymerase I gene region from Klebsiella aerogenes, Klebsiella pneumoniae and Escherichia coli.
    Struhl, K. & Davis, R.W. J Mol Biol 141, 343-68 (1980). [no abstract available]
  348. Eukaryotic DNA segments capable of autonomous replication in yeast.
    Stinchcomb, D.T., Thomas, M., Kelly, J., Selker, E. & Davis, R.W. Proc Natl Acad Sci U S A 77, 4559-63 (1980). [PubMed]
  349. Construction of a genetic linkage map in man using restriction fragment length polymorphisms.
    Botstein, D., White, R.L., Skolnick, M. & Davis, R.W. Am J Hum Genet 32, 314-31 (1980). [PubMed]
  350. A physiological study of functional expression in Escherichia coli of the cloned yeast imidazoleglycerolphosphate dehydratase gene.
    Struhl, K., Stinchcomb, D.T. & Davis, R.W. J Mol Biol 136, 291-307 (1980). [no abstract available]
  351. A physical, genetic and transcriptional map of the cloned his3 gene region of Saccharomyces cerevisiae.
    Struhl, K. & Davis, R.W. J Mol Biol 136, 309-32 (1980). [no abstract available]
  352. Rapid DNA isolations for enzymatic and hybridization analysis.
    Davis, R.W., Thomas, M., Cameron, J., St John, T.P., Scherer, S. & Padgett, R.A. Methods Enzymol 65, 404-11 (1980). [no abstract available]
  353. Isolation of galactose-inducible DNA sequences from Saccharomyces cerevisiae by differential plaque filter hybridization.
    St. John, T.P. & Davis, R.W. Cell 16, 443-52 (1979). [PubMed]
  354. Sterile host yeasts (SHY): a eukaryotic system of biological containment for recombinant DNA experiments.
    Botstein, D., Falco, S.C., Stewart, S.E., Brennan, M., Scherer, S., Stinchcomb, D.T., Struhl, K. & Davis, R.W. Gene 8, 17-24 (1979). [PubMed]
  355. Isolation and characterisation of a yeast chromosomal replicator.
    Stinchcomb, D.T., Struhl, K. & Davis, R.W. Nature 282, 39-43 (1979). [PubMed]
  356. Replacement of chromosome segments with altered DNA sequences constructed in vitro.
    Scherer, S. & Davis, R.W. Proc Natl Acad Sci U S A 76, 4951-5 (1979). [PubMed]
  357. Suppression of a yeast amber mutation in Escherichia coli.
    Struhl, K., Davis, R.W. & Fink, G.R. Nature 279, 78-9 (1979). [no abstract available]
  358. Evidence for transposition of dispersed repetitive DNA families in yeast.
    Cameron, J.R., Loh, E.Y. & Davis, R.W. Cell 16, 739-51 (1979). [PubMed]
  359. High-frequency transformation of yeast: autonomous replication of hybrid DNA molecules.
    Struhl, K., Stinchcomb, D.T., Scherer, S. & Davis, R.W. Proc Natl Acad Sci U S A 76, 1035-9 (1979). [PubMed]
  360. Isolation of galactose-inducible DNA sequences from Saccharomyces cerevisiae by differential plaque filter hybridization.
    St John, T.P. & Davis, R.W. Cell 16, 443-52 (1979). [PubMed]
  361. Cloning of the yeast tyrosine transfer RNA genes in bacteriophage lambda.
    Olson, M.V., Hall, B.D., Cameron, J.R. & Davis, R.W. J Mol Biol 127, 285-95 (1979). [no abstract available]
  362. Structural and Functional Analysis of the His3 Gene and Galactose Inducible Sequences in Yeast.
    Davis, R.W., St. John, T., Struhl, K., Stinchcomb, D., Scherer, S., McDonell, M. In Eukaryotic Gene Regulation 51-55 (Academic Press, Inc, N.Y., 1979).
  363. Unique arrangement of coding sequences for 5 S, 5.8 S, 18 S and 25 S ribosomal RNA in Saccharomyces cerevisiae as determined by R-loop and hybridization analysis.
    Philippsen, P., Thomas, M., Kramer, R.A. & Davis, R.W. J Mol Biol 123, 387-404 (1978). [no abstract available]
  364. Cloning of the yeast ribosomal DNA repeat unit in SstI and HindIII lambda vectors using genetic and physical size selections.
    Philippsen, P., Kramer, R.A. & Davis, R.W. J Mol Biol 123, 371-86 (1978). [no abstract available]
  365. Divergent transcription in the yeast ribosomal RNA coding region as shown by hybridization to separated strands and sequence analysis of cloned DNA.
    Kramer, R.A., Philippsen, P. & Davis, R.W.J Mol Biol 123, 405-16 (1978). [no abstract available]
  366. A new electron microscopic technique for establishing the positions of genes: an analysis of the yeast ribosomal RNA coding region.
    Ferguson, J. & Davis, R.W. J Mol Biol 123, 417-30 (1978). [no abstract available]
  367. Quantitative Electron Microscopy of Nucleic Acids.
    Ferguson, J., Davis, R.W. In Advanced Techniques in Biological Electron Microscopy II (ed. Koehler, J.K.) 123-171 (Springer Verlag,, Berlin-Heidelberg, 1978)
  368. Production of a functional eukaryotic enzyme in Escherichia coli: cloning and expression of the yeast structural gene for imidazole-glycerolphosphate dehydratase (his3).
    Struhl, K. & Davis, R.W. Proc Natl Acad Sci U S A 74, 5255-9 (1977). [PubMed]
  369. The effects of Escherichia coli and yeast DNA insertions on the growth of lambda bacteriophage.
    Cameron, J.R. & Davis, R.W. Science 196, 212-5 (1977). [PubMed]
  370. Five hundredfold overproduction of DNA ligase after induction of a hybrid lambda lysogen constructed in vitro.
    Panasenko, S.M., Cameron, J.R., Davis, R.W. & Lehman, I.R. Science 196, 188-9 (1977). [PubMed]
  371. Screening lambdagt recombinant clones by hybridization to single plaques in situ.
    Benton, W.D. & Davis, R.W. Science 196, 180-2 (1977). [no abstract available]
  372. Analysis of chromosomal integration and deletions of yeast plasmids.
    Cameron, J.R., Philippsen, P. & Davis, R.W. Nucleic Acids Res 4, 1429-48 (1977). [PubMed]
  373. Cloning of Satillite DNA Sequences with the l Vector lgt-araB.
    Phillipsen, P., Lee, C.S., Davis, R.W. In Eukaryotic Genetic System: ICN-UCLA Symposia on Molecular and Cellular Biology VIII 63-72 (1977).
  374. Genetic and Physical Selection of Eukaryotic Genes Cloned in E. coli.
    Davis, R.W., Thomas, M., Cameron, J.R., Philippsen, P., Kramer, R., St. John, T., Stuhl, K., Ferguson, J. In Caltech Symposium, Molecular Biology of the Mammalian Genetic Apparatus (ed. P. Ts'O, E.N.-H.B.P.) 16-27 (1977).
  375. Rapid Selection and screening Methods for the Isolation of Particular Cloned Eukaryotic DNA Sequences.
    Davis, R.W., Thomas, M., Benton, D., Cameron, J., Philippsen, P., Struhl, K., St. John, T., and Kramer, R. In Molecular Cloning of Recombinant DNA 155-160 (Academic Press, Inc, 1977)
  376. Hybridization of RNA to double-stranded DNA: formation of R-loops.
    Thomas, M., White, R.L. & Davis, R.W. Proc Natl Acad Sci U S A 73, 2294-8 (1976). [PubMed]
  377. Functional genetic expression of eukaryotic DNA in Escherichia coli.
    Struhl, K., Cameron, J.R. & Davis, R.W. Proc Natl Acad Sci U S A 73, 1471-5 (1976). [PubMed]
  378. Kinetic Studies on the Hybridization of RNA to Double Stranded DNA.
    Thomas, M., White, R.L., Davis, R.W. In Molecular Mechanisms in the Control of Gene Expression 427 (Academic Press, Inc., New York,, 1976).
  379. Genetic Selections and the Cloning of Prokaryotic and Eukaryotic Genes.
    Struhl, K., Davis, R.W. In Molecular Mechanisms in the Control of Gene Expression 495 (Academic Press, Inc., New York,, 1976).
  380. Isolation of bacteriophage lambda containing yeast ribosomal RNA genes: screening by in situ RNA hybridization to plaques.
    Kramer, R.A., Cameron, J.R. & Davis, R.W. Cell 8, 227-32 (1976). [PubMed]
  381. Determination of DNA concentration by electron microscopy.
    Raleigh, E.A. & Davis, R.W. Anal Biochem 72, 460-7 (1976). [no abstract available]
  382. Cloning of the Ribosomal RNA Genes of Yeast.
    Kramer, R., Philippsen, P., Cameron, J., Davis, R.W. In Molecular Mechanisms in the Control of Gene Expression 481 (Academic Press, Inc., New York, 1976).
  383. In vitro construction of bacteriophage lambda carrying segments of the Escherichia coli chromosome: selection of hybrids containing the gene for DNA ligase.
    Cameron, J.R., Panasenko, S.M., Lehman, I.R. & Davis, R.W. Proc Natl Acad Sci U S A 72, 3416-20 (1975). [PubMed]
  384. EcoRI endonuclease cleavage map of bacteriophage P4-DNA.
    Goldstein, L., Thomas, M. & Davis, R.W. Virology 66, 420-7 (1975). [no abstract available]
  385. An electron microscopic method for studying and mapping the region of weak sequence homology between simian virus 40 and polyoma DNAs.
    Ferguson, J. & Davis, R.W. J Mol Biol 94, 135-49 (1975). [no abstract available]
  386. T antigen binds to simian virus 40 DNA at the origin of replication.
    Reed, S.I., Ferguson, J., Davis, R.W. & Stark, G.R. Proc Natl Acad Sci U S A 72, 1605-9 (1975). [PubMed]
  387. Studies on the cleavage of bacteriophage lambda DNA with EcoRI Restriction endonuclease.
    Thomas, M. & Davis, R.W. J Mol Biol 91, 315-28 (1975). [no abstract available]
  388. Isolation and characterization of individual clones of simian virus 40 mutants containing deletions duplications and insertions in their DNA.
    Mertz, J.E., Carbon, J., Herzberg, M., Davis, R.W. & Berg, P.Cold Spring Harb Symp Quant Biol 39 Pt 1, 69-84 (1975). [no abstract available]
  389. Action of Escherichia coli P1 restriction endonuclease on simian virus 40 DNA.
    Risser, R., Hopkins, N., Davis, R.W., Delius, H. & Mulder, C. J Mol Biol 89, 517-44 (1974). [no abstract available]
  390. Viable molecular hybrids of bacteriophage lambda and eukaryotic DNA.
    Thomas, M., Cameron, J.R. & Davis, R.W. Proc Natl Acad Sci U S A 71, 4579-83 (1974). [no abstract available]
  391. Potential biohazards of recombinant DNA molecules.
    Berg, P., Baltimore, D., Boyer, H.W., Cohen, S.N., Davis, R.W., Hogness, D.S., Nathans, D., Roblin, R., Watson, J.D., Weissman, S. & Zinder, N.D. Letter: Science 185, 303 (1974). [no abstract available]
  392. Cleavage of DNA by RI restriction endonuclease generates cohesive ends.
    Mertz, J.E. & Davis, R.W. Proc Natl Acad Sci U S A 69, 3370-4 (1972). [no abstract available]
  393. Electron Microscopy Heteroduplex Methods for Mapping Regions of Base Sequence Homology in Nucleic Acids.
    Davis, R.W., Simon, M.N., Davidson, N. Methods in Enzymology 21, 413-428 (1971).
  394. A study in evolution: the DNA base sequence homology between coliphages T7 and T3.
    Davis, R.W. & Hyman, R.W. J Mol Biol 62, 287-301 (1971). [no abstract available]
  395. Dual control of arabinose genes on transducing phage lambda-dara.
    Schleif, R., Greenblatt, J. & Davis, R.W. J Mol Biol 59, 127-50 (1971). [no abstract available]
  396. Deletion mutants of bacteriophage lambda. 3. Physical structure of att-phi.
    Davis, R.W. & Parkinson, J.S. J Mol Biol 56, 403-23 (1971). [no abstract available]
  397. Electron Microscope Heteroduplex Studies of Sequence Relations of the DNA Molecules of Lambdoid Phages.
    Simon, M.N., Davis, R.W. and Davidson, N. Cold Spring Harbor Symposium of Qualitative Biology Bacteriophage Lambda, 313-328 (1971).
  398. A physical map of the left arm of the lambda chromosome.
    Parkinson, J.S., Davis, R.W. J Mol Biol 56, 425-428 (1971). [no abstract available]
  399. A physical study by electron microscopy of the terminally reptitious, circularly permuted DNA from the coliphage particles of Escherichia coli 15.
    Lee, C.S., Davis, R. W., Davidson, N. J Mol Biol 48, 1-22 (1970). [no abstract available]
  400. Homology and structural relationships between the dimeric and monomeric circular forms of mitochondrial DNA from human leukemic leukocytes.
    Clayton, D.A., Davis, R.W. & Vinograd, J. J Mol Biol 47, 137-53 (1970). [no abstract available]
  401. The Physical Location of the In Vitro RNA Initiation Site and Termination Sites of T7M DNA.
    Davis, R.W., Hyman, R.W. Cold Spring Harbor Symposium of Qualitative Biology Vol. XXXV, 269-281 (1970).
  402. The process of infection with Bacteriophage phi-X174. XXIX. In vivo studies on the synthesis of the single-stranded DNA of progeny phi-X174 bacteriophage.
    Knippers, R., Razin, A., Davis, R. & Sinsheimer, R.L.J Mol Biol 45, 237-63 (1969). [no abstract available]
  403. Electron-microscopic visualization of deletion mutations.
    Davis, R.W., Davidson, N. Proc Natl Acad Sci U S A. 1968 May;60(1):243-50. [no abstract available]

updated March 12, 2012

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