Stanford School of Medicine
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Ron W. Davis: Publications & Patents

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  1. Coaxial Nanoneedle.
    Esfandyarpour, H., K.B. Parizi, and R.W. Davis. (2008). [Stanford Docket S06-072]
  2. DNA fingerprinting using a branch migration assay.
    Pourmand, N., R.W. Davis, and S.X. Wang. (2007). US Patent 7,238,486. [USPTO]
  3. Activated Nanopores for Biochemical Analysis.
    Davis, R., M. Ronaghi, and A.H. Talasaz. (2007). [Stanford Reference S03-098],
  4. Renaturation, reassociation, association and hybridization of nucleic acid molecules.
    Namsaraev, E., R.W. Davis, and G. Karlin-Neumann. (2006). US Patent 7,129,044. [USPTO]
  5. Single-Stranded DNA from Double-Stranded DNA.
    Davis, RW., Krishnakumar, S., Mindrinos, M. (2006) [Stanford Reference S06-082]
  6. Needle-Sequencing: Novel Ultra Sensitive Gene Sequencing Platform.
    Esfandyarpour, H. and R.W. Davis. (2006). [Stanford Docket S06-080]
  7. Assay for Influenza Viruses, Including H5N1.
    Davis, RW. Diamond, L. Kumm, J. Pourmand, N. (2006). [Stanford Reference S06-155]
  8. Methods of improved sensitivity for proximity ligation.
    Davis, R.W., Fredriksson, S. Patents Pending [Stanford Reference S04-074]
  9. Specific Region Identification for Human Papilloma Virus.
    Pourmand, N., Gharizadeh, B., Davis, R.W. (2005) [Stanford Reference S05-177]
  10. Direct multiplex characterization of genomic DNA.
    Willis, T.D., Hardenbol, P., Jain, M., Stolc, V., Ronaghi, M., Davis, R.W. (2005) United States Patent 6,858,412. [USPTO]
  11. Dimeric flourescent polypeptides.
    Davis, R.W., Vaillancourt, P. (2005). US Patent 6,936,428. [USPTO]
  12. Clinical and Genomic/Proteomic Data Integration and QA/QC Analysis System.
    Davis, RW., Ji, H., Kumm, J. (2004). [Stanford Docket S04-255]
  13. Charge Alternation DNA Detection System.
    Pourmand, N., Karhanek, M., Davis, R.W. U.S. PTO No. 60/627,192. Filed Nov. 12,2004 [Stanford Reference S04-291]
  14. Microarray-based DNA fingerprinting using branch migration assay.
    Pourmand, N., Davis, R.W., Wang, S.X. (2004). [Stanford Docket S04-276]
  15. Polypeptides from Chlamydia pneumoniae and their use in the diagnosis, prevention and treatment of disease.
    Stephens, R.S. Mitchell, W. Kalman, S.S. Davis, R.W. (2004). US Patent 6,822,071. [USPTO]
  16. Reciprocal Hemizygous Scanning (RHS).
    Davis, R.W., McCusker, J., Steinmetz L.M., Patent Application. [Stanford Docket 01-117]
  17. Concatenated Oligonucleotide Primer Synthesis for PCR.
    Davis, R.W., Hardenbol P., Willis T. [Stanford Docket S00-044].
  18. Identification of drugs and drug targets by detection of the stress response.
    Davis, R.W., Giaever, G. (2004) US Patent 6,743,583. [Stanford Docket S99-064], [USPTO]
  19. Selecting tag nucleic acids.
    Morris, M.S., Shoemaker, D.D., Davis, R.W,. Mittmann, M.P. (2002). US Patent 6,458,530. [USPTO]
  20. Recombinant mycobacteria.
    Bloom, B.R. Davis, R.W. Jacobs, Jr., R. Young, R.A. Husson, R.N. (2002). US Patent 6,372,478. [USPTO]
  21. Recombinant mycobacterial vaccine.
    Bloom, B.R. Davis, R.W. Jacobs, Jr., W.R. Young, R.A. Husson, R.N. (2001). US Patent 6,270,776. [USPTO]
  22. Highly parallel and sensitive method for identifying drugs and drug targets.
    Davis, R.W., Giaever, G.N., Shoemaker D. (The Board of Trustees of the Leland Stanford Junior University, USA, 2000). US Patent 6,046,002. [USPTO], [Stanford Reference]
  23. Mycobacteriophages and uses thereof.
    Bloom, B.R. Davis; R.W. Jacobs, Jr.; W.R. Young, R.A. Husson, R.N. (1999). US Patent 5,968,733. [USPTO]
  24. Cleaved amplified RFLP detection methods.
    Ausubel, F. Davis, R.W. Preuss, D. (1999). US Patent 6,004,783. [USPTO]
  25. Recombinant mycobacteria.
    Bloom, B.R. Jacobs, Jr., W.R. Davis, R.W. Young, R.A. Husson, R.N. US Patent 5,854,055. [USPTO]
  26. Electrophoresis using contour-clamped electric fields.
    Chu, G., Vollrath, D., Davis, R., (1996). United States Patent 5,549,796. The Board of Trustees of the Leland Stanford Junior University. [USPTO]
  27. Recombinant mycobacterial vaccine.
    Bloom, B.R. Davis, R.W. Jacobs, Jr., W.R. Young, R.A. Husson, R.N. (1996). US Patent 5,504,005. [USPTO]
  28. Method for detecting a nucleotide at a specific location within a nucleic acid using exonuclease activity.
    Davis, R.W., Myles, A. (1995). US Patent 5,391,480. [USPTO]
  29. Electrophoresis using contour-clamped electric fields.
    Chu, G., Vollrath, D., Davis, R.W. (1992). US Patent 5,165,898. The Board of Trustees of the Leland Stanford Junior University. [USPTO]
  30. Use of the GAL1 yeast promoter.
    Botstein, D. Davis, R.W. Fink, G.R. Taunton-Rigby, A. Knowlton, R.G. Mao, Jen-i Moir, D.T. Goff, C.G. (1992). US Patent 5,139,936. [USPTO]
  31. Encoding antigens of M. Leprae.
    Young, R.A., Bloom, B.R., Davis, R.W. (1990). US Patent 4,906,742. [USPTO]
  32. System for efficient isolation of genes using probes.
    Davis, R.W., Young, R.A. (1988). US Patent 4,788,135. [USPTO]
  33. Rennin-containing disrupted yeast cells used in cheese manufacture.
    Botstein, D., Fink, G.R., Davis, R.W. (1987). US Patent 4,695,470. [USPTO]
  34. GAL1 yeast promoter linked to non galactokinase gene.
    Botstein, D. Davis, R.W. Fink, G.R. Taunton-Rigby, A. Knowlton, R.G. Mao, Jen-i Moir, D.T. Goff, C.G. (1897). US Patent 4,661,454. [USPTO]

Publications

  1. A comprehensive assay for targeted multiplex amplification of human DNA sequences.
    Krishnakumar S, Zheng J, Wilhelmy J, Faham M, Mindrinos M, Davis R. Proc Natl Acad Sci U S A. 2008 Jul 8;105(27):9296-301. Epub 2008 Jul 2. [PubMed], [Publisher Full Text]
  2. Pervasive and persistent redundancy among duplicated genes in yeast.
    Dean EJ, Davis JC, Davis RW, Petrov DA. PLoS Genet. 2008 Jul 4;4(7):e1000113. [PubMed], [Publisher Full Text]
  3. High-resolution, in vivo magnetic resonance imaging of Drosophila at 18.8 Tesla.
    Null B, Liu CW, Hedehus M, Conolly S, Davis RW. PLoS ONE. 2008 Jul 30;3(7):e2817. [PubMed], [Publisher Full Text]
  4. High throughput automated allele frequency estimation by pyrosequencing.
    Doostzadeh J, Shokralla S, Absalan F, Jalili R, Mohandessi S, Langston JW, Davis RW, Ronaghi M, Gharizadeh B. PLoS ONE. 2008 Jul 16;3(7):e2693. [PubMed], [Publisher Full Text]
  5. Conformational flexibility of a model protein upon immobilization on self-assembled monolayers.
    Bigdeli S, Talasaz AH, Ståhl P, Persson HH, Ronaghi M, Davis RW, Nemat-Gorgani M. Biotechnol Bioeng. 2008 May 1;100(1):19-27. [PubMed], [Full Text PDF]
  6. The chemical genomic portrait of yeast: uncovering a phenotype for all genes.
    Hillenmeyer, M. E. Fung, E. Wildenhain, J. Pierce, S. E. Hoon, S. Lee, W. Proctor, M. St Onge, R. P. Tyers, M. Koller, D. Altman, R. B. Davis, R. W. Nislow, C. Giaever, G. Science. 2008 Apr 18;320(5874):362-5. [PubMed], [Publisher Full Text]
  7. Microfluidic leukocyte isolation for gene expression analysis in critically ill hospitalized patients.
    Russom, A. Sethu, P. Irimia, D. Mindrinos, M. N. Calvano, S. E. Garcia, I. Finnerty, C. Tannahill, C. Abouhamze, A. Wilhelmy, J. Lopez, M. C. Baker, H. V. Herndon, D. N. Lowry, S. F. Maier, R. V. Davis, R. W. Moldawer, L. L. Tompkins, R. G. Toner, M. Clin Chem. 2008 May;54(5):891-900. Epub 2008 Mar 28. [PubMed], [Publisher Full Text]
  8. Bisphenol A induces a profile of tumor aggressiveness in high-risk cells from breast cancer patients.
    Dairkee, S. H. Seok, J. Champion, S. Sayeed, A. Mindrinos, M. Xiao, W. Davis, R. W. Goodson, W. H. Cancer Res. 2008 Apr 1;68(7):2076-80. [PubMed], [Publisher Full Text]
  9. An integrated platform of genomic assays reveals small-molecule bioactivities.
    Hoon, S. Smith, A. M. Wallace, I. M. Suresh, S. Miranda, M. Fung, E. Proctor, M. Shokat, K. M. Zhang, C. Davis, R. W. Giaever, G. StOnge, R. P. Nislow, C. Nat Chem Biol. 2008 Aug;4(8):498-506. Epub 2008 Jul 11. [PubMed], [Publisher Full Text]
  10. A pico-calorimetric method for DNA sequencing.
    Esfandyarpour, H.; Pease, R.F.W.; Davis, R.W. J. Vac Sci. and Technol. B 26(2), 2008.
  11. Real Time Simulation of Pyrophosphate Concentration and Heat Detection in Thermosequencing.
    Esfandyarpour, H. Zheng, B. Pease, RFW. Davis, R.W. Biomicrofluidics 2(1), 2008.
  12. Gate-Controlled Microfluidic with Magnetic Bead in DNA Sequencing.
    Esfandyarpour, H. Davis R.W. invited and to appear in International Journal of Microfluidics and Nanofluidics.
  13. A system for multiplexed direct electrical detection of DNA synthesis.
    Anderson, E. P. Daniels, J. S. Yu, H. Karhanek, M. Lee, T. H. Davis, R. W. Pourmand, N. Sensors and Actuators B: Chemical 129(1):79-86, 29 January 2008. [Full Text]
  14. Multiplexed proximity ligation assays to profile putative plasma biomarkers relevant to pancreatic and ovarian cancer.
    Fredriksson, S. Horecka, J. Terje Brustugun, O. Schlingemann, J. Koong, A. C. Tibshirani, R. Davis, R. W. Clin Chem 54(3):582-9 (2008). [PubMed], [Publisher Full Text]
  15. Interference of globin genes with biomarker discovery for allograft rejection in peripheral blood samples.
    Li, L. Ying, L. Naesens, M. Xiao, W. Sigdel, T. Hsieh, S. Martin, J. Chen, R. Liu, K. Mindrinos, M. Davis, R. Sarwal, M. Physiol Genomics 32(2):190-7 (2008). [PubMed], [Publisher Full Text]
  16. High-throughput creation of a whole-genome collection of yeast knockout strains.
    Chu, A. M. Davis, R. W. Methods Mol Biol. 2008;416:205-20. [PubMed], [Publisher Full Text]
  17. Genome-wide analysis of barcoded Saccharomyces cerevisiae gene-deletion mutants in pooled cultures.
    Pierce, S. E. Davis, R. W. Nislow, C. Giaever, G. Nat Protoc 2(11):2958-74 (2007). [PubMed], [Publisher Full Text]
  18. Diverse cellular functions of the Hsp90 molecular chaperone uncovered using systems approaches.
    McClellan, A. J. Xia, Y. Deutschbauer, A. M. Davis, R. W. Gerstein, M. Frydman, J. Cell 131(1):121-35 (2007). [PubMed], [Publisher Full Text]
  19. Conformational flexibility of a model protein upon immobilization on selfassembled monolayers.
    Bigdeli, S. Talasaz, A. H. Stahl, P. Persson, H. H. Ronaghi, M. Davis, R. W. Nemat-Gorgani, M. Biotechnol Bioeng. (2007). [PubMed], [Publisher]
  20. A novel catechol-based universal support for oligonucleotide synthesis.
    Anderson, K.M. Jaquinod, L. Jensen, M.A. Ngo, N. Davis, R.W. J Org Chem 72(26):9875-80 (2007). [PubMed], [Publisher Full Text]
  21. Connector inversion probe technology: a powerful one-primer multiplex DNA amplification system for numerous scientific applications.
    Akhras, M.S. Unemo, M. Thiyagarajan, S. Nyren, P. Davis, R.W. Fire, A.Z. Pourmand, N. PLoS ONE 2(9):e915 (2007). [PubMed], [Publisher Full Text]
  22. A high-resolution atlas of nucleosome occupancy in yeast.
    Lee, W. Tillo, D. Bray, N. Morse, R. H. Davis, R.W. Hughes, T. R. Nislow, C. Nat Genet 39(10):1235-44 (2007). [PubMed], [Publisher Full Text]
  23. Unusual selection on the KIR3DL1/S1 natural killer cell receptor in Africans.
    Norman, P. J. Abi-Rached, L. Gendzekhadze, K. Korbel, D. Gleimer, M. Rowley, D. Bruno, D. Carrington, C.V. Chandanayingyong, D. Chang, Y.H. Crespi, C. Saruhan-Direskeneli, G. Fraser, P.A. Hameed, K. Kamkamidze, G. Koram, K. A. Layrisse, Z. Matamoros, N. Mila, J. Park, M. H. Pitchappan, R. M. Ramdath, D.D. Shiau, M.Y. Stephens, H.A. Struik, S. Verity, D.H. Vaughan, R.W. Tyan, D. Davis, R.W. Riley, E.M. Ronaghi, M. Parham, P. Nat Genet 39(9):1092-9 (2007). [PubMed], [Publisher Full Text]
  24. PathogenMip assay: a multiplex pathogen detection assay.
    Akhras, M.S. Thiyagarajan, S. Villablanca, A.C. Davis, R.W. Nyren, P. Pourmand, N. PLoS ONE 2(2):e223 (2007). [PubMed], [Publisher Full Text]
  25. Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789.
    Wei W, McCusker JH, Hyman RW, Jones T, Ning Y, Cao Z, Gu Z, Bruno D, Miranda M, Nguyen M, Wilhelmy J, Komp C, Tamse R, Wang X, Jia P, Luedi P, Oefner PJ, David L, Dietrich FS, Li Y, Davis RW, Steinmetz LM. Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12825-30. Epub 2007 Jul 25. [PubMed]
  26. Multigene amplification and massively parallel sequencing for cancer mutation discovery.
    Dahl F, Stenberg J, Fredriksson S, Welch K, Zhang M, Nilsson M, Bicknell D, Bodmer WF, Davis RW, Ji H. Proc Natl Acad Sci U S A. 2007 May 17; [Epub ahead of print] [PubMed]
  27. Branch migration displacement assay with automated heuristic analysis for discrete DNA length measurement using DNA microarrays.
    Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6146-51. Epub 2007 Mar 27. [PubMed]
  28. Multiplexed protein detection by proximity ligation for cancer biomarker validation.
    Fredriksson S, Dixon W, Ji H, Koong AC, Mindrinos M, Davis RW. Nat Methods. 2007 Apr;4(4):327-9. Epub 2007 Mar 18. [PubMed]
  29. Multiplex amplification of all coding sequences within 10 cancer genes by Gene-Collector.
    Fredriksson S, Baner J, Dahl F, Chu A, Ji H, Welch K, Davis RW. Nucleic Acids Res. 2007;35(7):e47. Epub 2007 Feb 22. [PubMed]
  30. PathogenMip Assay: A Multiplex Pathogen Detection Assay.
    Akhras MS, Thiyagarajan S, Villablanca AC, Davis RW, Nyren P, Pourmand N. PLoS ONE. 2007 Feb 21;2:e223. [PubMed]
  31. Accelerating the discovery of biologically active small molecules using a high-throughput yeast halo assay.
    Gassner NC,Tamble CM, Bock JE, Cotton N, White KN, Tenney K, St Onge RP, Proctor MJ, Giaever G, Nislow C, Davis RW, Crews P, Holman TR, Lokey RS. J Nat Prod. 2007 Mar;70(3):383-90. Epub 2007 Feb 10. [PubMed]
  32. High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing.
    Juneau K, Palm C, Miranda M, Davis RW. Proc Natl Acad Sci U S A. 2007 Jan 30;104(5):1522-7. Epub 2007 Jan 23. [PubMed]
  33. Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions.
    Onge RP, Mani R, Oh J, Proctor M, Fung E, Davis RW, Nislow C, Roth FP, Giaever G. Nat Genet. 2007 Feb;39(2):199-206. Epub 2007 Jan 7. [PubMed]
  34. Rapid and Highly Informative Diagnostic Assay for H5N1 Influenza Viruses.
    Pourmand N, Diamond L, Garten R, Erickson JP, Kumm J, Donis RO, Davis RW. PLoS ONE. 2006 Dec 20;1:e95. [PubMed]
  35. Reproducibility Probability Score--incorporating measurement variability across laboratories for gene selection.
    Lin G, He X, Ji H, Shi L, Davis RW, Zhong S. Nat Biotechnol. 2006 Dec;24(12):1476-7. [PubMed]
  36. PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens.
    Thiyagarajan S, Karhanek M, Akhras M, Davis RW, Pourmand N. BMC Bioinformatics. 2006 Nov 14;7:500. [PubMed]
  37. Current rectification with poly-l-lysine-coated quartz nanopipettes.
    Umehara S, Pourmand N, Webb CD, Davis RW, Yasuda K, Karhanek M. Nano Lett. 2006 Nov;6(11):2486-92. [PubMed]
  38. Cell-specific expression and pathway analyses reveal alterations in trauma-related human T cell and monocyte pathways.
    Laudanski K, Miller-Graziano C, Xiao W, Mindrinos MN, Richards DR, De A, Moldawer LL, Maier RV, Bankey P, Baker HV, Brownstein BH, Cobb JP, Calvano SE, Davis RW, Tompkins RG. Proc Natl Acad Sci U S A. 2006 Oct 17;103(42):15564-9. Epub 2006 Oct 10. [PubMed]
  39. A high-resolution map of transcription in the yeast genome.
    David, L., Huber, W., Granovskaia, M., Toedling, J., Palm, C.J., Bofkin, L., Jones, T., Davis, R.W. & Steinmetz, L.M. Proc Natl Acad Sci U S A 103, 5320-5 (2006). [PubMed]
  40. Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae.
    Kastenmayer JP, Ni L, Chu A, Kitchen LE, Au WC, Yang H, Carter CD, Wheeler D, Davis RW, Boeke JD, Snyder MA, Basrai MA. Genome Res. 2006 Mar;16(3):365-73. [PubMed]
  41. A haplotype framework for cystic fibrosis mutations in Iran.
    Elahi, E., Khodadad, A., Kupershmidt, I., Ghasemi, F., Alinasab, B., Naghizadeh, R., Eason, R.G., Amini, M., Esmaili, M., Esmaeili Dooki, M.R., Sanati, M.H., Davis, R.W., Ronaghi, M. & Thorstenson, Y.R. J Mol Diagn 8, 119-27 (2006). [PubMed]
  42. Data quality in genomics and microarrays.
    Ji, H. & Davis, R.W. Nat Biotechnol 24, 1112-3 (2006). [PubMed]
  43. Molecular inversion probe analysis of gene copy alterations reveals distinct categories of colorectal carcinoma.
    Ji, H., Kumm, J., Zhang, M., Farnam, K., Salari, K., Faham, M., Ford, J.M. & Davis, R.W. Cancer Res 66, 7910-9 (2006). [PubMed]
  44. Introns regulate RNA and protein abundance in yeast.
    Juneau, K., Miranda, M., Hillenmeyer, M.E., Nislow, C. & Davis, R.W. Genetics 174, 511-8 (2006). [PubMed]
  45. High dynamic range characterization of the trauma patient plasma proteome.
    Liu, T., Qian, W.J., Gritsenko, M.A., Xiao, W., Moldawer, L.L., Kaushal, A., Monroe, M.E., Vamum, S.M., Moore, R.J., Purvine, S.O., Maier, R.V., Davis, R.W., Tompkins, R.G., Camp, D.G., 2nd & Smith, R.D. Mol Cell Proteomics (2006). [PubMed]
  46. A unique and universal molecular barcode array.
    Pierce, S.E., Fung, E.L., Jaramillo, D.F., Chu, A.M., Davis, R.W., Nislow, C. & Giaever, G. Nat Methods 3, 601-3 (2006). [PubMed]
  47. Direct electrical detection of DNA synthesis.
    Pourmand, N., Karhanek, M., Persson, H.H., Webb, C.D., Lee, T.H., Zahradnikova, A. & Davis, R.W. Proc Natl Acad Sci U S A 103, 6466-70 (2006). [PubMed]
  48. Prediction of protein orientation upon immobilization on biological and nonbiological surfaces.
    Talasaz, A.H., Nemat-Gorgani, M., Liu, Y., Stahl, P., Dutton, R.W., Ronaghi, M. & Davis, R.W. Proc Natl Acad Sci U S A 103, 14773-8 (2006). [PubMed]
  49. Analysis of hybridization on the molecular barcode GeneChip microarray.
    Walton, S.P., Mindrinos, M.N. & Davis, R.W. Biochem Biophys Res Commun 348, 689-96 (2006). [PubMed]
  50. Transcriptional profiling of aging in human muscle reveals a common aging signature.
    Zahn, J.M., Sonu, R., Vogel, H., Crane, E., Mazan-Mamczarz, K., Rabkin, R., Davis, R.W., Becker, K.G., Owen, A.B. & Kim, S.K. PLoS Genet 2, e115 (2006). [PubMed]
  51. Profiling early infection responses: Pseudomonas aeruginosa eludes host defenses by suppressing antimicrobial peptide gene expression.
    Apidianakis, Y., Mindrinos, M.N., Xiao, W., Lau, G.W., Baldini, R.L., Davis, R.W. & Rahme, L.G. Proc Natl Acad Sci U S A 102, 2573-8 (2005). [PubMed]
  52. A network-based analysis of systemic inflammation in humans.
    Calvano, S.E., Xiao, W., Richards, D.R., Felciano, R.M., Baker, H.V., Cho, R.J., Chen, R.O., Brownstein, B.H., Cobb, J.P., Tschoeke, S.K., Miller-Graziano, C., Moldawer, L.L., Mindrinos, M.N., Davis, R.W., Tompkins, R.G. & Lowry, S.F. Nature 437, 1032-7 (2005). [PubMed]
  53. Application of genome-wide expression analysis to human health and disease.
    Cobb, J.P., Mindrinos, M.N., Miller-Graziano, C., Calvano, S.E., Baker, H.V., Xiao, W., Laudanski, K., Brownstein, B.H., Elson, C.M., Hayden, D.L., Herndon, D.N., Lowry, S.F., Maier, R.V., Schoenfeld, D.A., Moldawer, L.L., Davis, R.W., Tompkins, R.G., Baker, H.V., Bankey, P., Billiar, T., Brownstein, B.H., Calvano, S.E., Camp, D., Chaudry, I., Cobb, J.P., Davis, R.W., Elson, C.M., Freeman, B., Gamelli, R., Gibran, N., Harbrecht, B., Hayden, D.L., Heagy, W., Heimbach, D., Herndon, D.N., Horton, J., Hunt, J., Laudanski, K., Lederer, J., Lowry, S.F., Maier, R.V., Mannick, J., McKinley, B., Miller-Graziano, C., Mindrinos, M.N., Minei, J., Moldawer, L.L., Moore, E., Moore, F., Munford, R., Nathens, A., O'Keefe, G., Purdue, G., Rahme, L., Remick, D., Sailors, M., Schoenfeld, D.A., Shapiro, M., Silver, G., Smith, R., Stephanopoulos, G., Stormo, G., Tompkins, R.G., Toner, M., Warren, S., West, M., Wolfe, S., Xiao, W. & Young, V. Proc Natl Acad Sci U S A 102, 4801-6 (2005). [PubMed]
  54. Quantitative trait loci mapped to single-nucleotide resolution in yeast.
    Deutschbauer, A.M. & Davis, R.W. Nat Genet 37, 1333-40 (2005). [PubMed]
  55. Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast.
    Deutschbauer, A.M., Jaramillo, D.F., Proctor, M., Kumm, J., Hillenmeyer, M.E., Davis, R.W., Nislow, C. & Giaever, G. Genetics 169, 1915-25 (2005). [PubMed]
  56. Multiplexed variation scanning for 1,000 amplicons in hundreds of patients using mismatch repair detection (MRD) on tag arrays.
    Faham M, Zheng J, Moorhead M, Fakhrai-Rad H, Namsaraev E, Wong K, Wang Z, Chow SG, Lee L, Suyenaga K, Reichert J, Boudreau A, Eberle J, Bruckner C, Jain M, Karlin-Neumann G, Jones HB, Willis TD, Buxbaum JD, Davis RW. Proc Natl Acad Sci U S A. 2005 Oct 11;102(41):14717-22. Epub 2005 Oct 3. [PubMed]
  57. A latent variable model for chemogenomic profiling.
    Flaherty, P., Giaever, G., Kumm, J., Jordan, M.I. & Arkin, A.P. Bioinformatics 21, 3286-93 (2005).
  58. Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae.
    Gu, Z., David, L., Petrov, D., Jones, T., Davis, R.W. & Steinmetz, L.M. Proc Natl Acad Sci U S A 102, 1092-7 (2005). [PubMed]
  59. Highly multiplexed molecular inversion probe genotyping: over 10,000 targeted SNPs genotyped in a single tube assay.
    Hardenbol, P., Yu, F., Belmont, J., Mackenzie, J., Bruckner, C., Brundage, T., Boudreau, A., Chow, S., Eberle, J., Erbilgin, A., Falkowski, M., Fitzgerald, R., Ghose, S., Iartchouk, O., Jain, M., Karlin-Neumann, G., Lu, X., Miao, X., Moore, B., Moorhead, M., Namsaraev, E., Pasternak, S., Prakash, E., Tran, K., Wang, Z., Jones, H.B., Davis, R.W., Willis, T.D. & Gibbs, R.A. Genome Res 15, 269-75 (2005). [PubMed]
  60. Bioluminescence regenerative cycle (BRC) system: theoretical considerations for nucleic acid quantification assays.
    Hassibi, A., Contag, C., Vlad, M.O., Hafezi, M., Lee, T.H., Davis, R.W. & Pourmand, N. Biophys Chem 116, 175-85 (2005). [PubMed]
  61. Microbes on the human vaginal epithelium.
    Hyman, R.W., Fukushima, M., Diamond, L., Kumm, J., Giudice, L.C. & Davis, R.W. Proc Natl Acad Sci U S A 102, 7952-7 (2005). [PubMed]
  62. Single DNA molecule detection using nanopipettes and nanoparticles.
    Karhanek, M., Kemp, J.T., Pourmand, N., Davis, R.W. & Webb, C.D. Nano Lett 5, 403-7 (2005). [PubMed]
  63. A novel method for STR-based DNA profiling using microarrays.
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    Shen, P., Wang, F., Underhill, P.A., Franco, C., Yang, W.H., Roxas, A., Sung, R., Lin, A.A., Hyman, R.W., Vollrath, D., Davis, R.W., Cavalli-Sforza, L.L. & Oefner, P.J. Proc Natl Acad Sci U S A 97, 7354-9 (2000). [PubMed]
  125. Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays.
    Aharoni, A., Keizer, L.C., Bouwmeester, H.J., Sun, Z., Alvarez-Huerta, M., Verhoeven, H.A., Blaas, J., van Houwelingen, A.M., De Vos, R.C., van der Voet, H., Jansen, R.C., Guis, M., Mol, J., Davis, R.W., Schena, M., van Tunen, A.J. & O'Connell, A.P. Plant Cell 12, 647-62 (2000). [PubMed]
  126. DAtA: database of Arabidopsis thaliana annotation.
    Palm, C.J., Federspiel, N.A. & Davis, R.W. Nucleic Acids Res 28, 102-3 (2000). [PubMed]
  127. Comprehensive mutational analysis of the ATM gene by denaturing HPLC.
    Thorstenson, Y.R., Oefner, P.J., Goss, V., Davis, R.W., Gatti, R.A., Chu, G. Am. J. Hum. Genet 67 [Suppl. 2], 100 (2000).
  128. Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae.
    ter Linde, J.J., Liang, H., Davis, R.W., Steensma, H.Y., van Dijken, J.P. & Pronk, J.T. J Bacteriol 181, 7409-13 (1999). [PubMed]
  129. Genome-wide mapping with biallelic markers in Arabidopsis thaliana.
    Cho, R.J., Mindrinos, M., Richards, D.R., Sapolsky, R.J., Anderson, M., Drenkard, E., Dewdney, J., Reuber, T.L., Stammers, M., Federspiel, N., Theologis, A., Yang, W.H., Hubbell, E., Au, M., Chung, E.Y., Lashkari, D., Lemieux, B., Dean, C., Lipshutz, R.J., Ausubel, F.M., Davis, R.W. & Oefner, P.J. Nat Genet 23, 203-7 (1999). [PubMed]
  130. Whole genome genetic-typing in yeast using high-density oligonucleotide arrays.
    Winzeler, E.A., Lee, B., McCusker, J.H. & Davis, R.W. Parasitology 118 Suppl, S73-80 (1999). [PubMed]
  131. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis.
    Winzeler, E.A., Shoemaker, D.D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J.D., Bussey, H., Chu, A.M., Connelly, C., Davis, K., Dietrich, F., Dow, S.W., El Bakkoury, M., Foury, F., Friend, S.H., Gentalen, E., Giaever, G., Hegemann, J.H., Jones, T., Laub, M., Liao, H., Davis, R.W. & et al. Science 285, 901-6 (1999). [PubMed]
  132. Fluorescence-based expression monitoring using microarrays.
    Winzeler, E.A., Schena, M. & Davis, R.W. Methods Enzymol 306, 3-18 (1999). [PubMed]
  133. An automated sample preparation system for large-scale DNA sequencing.
    Marziali, A., Willis, T.D., Federspiel, N.A. & Davis, R.W. Genome Res 9, 457-62 (1999). [PubMed]
  134. Comparative genomes of Chlamydia pneumoniae and C. trachomatis.
    Kalman, S., Mitchell, W., Marathe, R., Lammel, C., Fan, J., Hyman, R.W., Olinger, L., Grimwood, J., Davis, R.W. & Stephens, R.S. Nat Genet 21, 385-9 (1999). [PubMed]
  135. Distribution of haplotypes from a chromosome 21 region distinguishes multiple prehistoric human migrations.
    Jin, L., Underhill, P.A., Doctor, V., Davis, R.W., Shen, P., Cavalli-Sforza, L.L. & Oefner, P.J. Proc Natl Acad Sci U S A 96, 3796-800 (1999). [PubMed]
  136. The mouse mahogany locus encodes a transmembrane form of human attractin.
    Gunn, T.M., Miller, K.A., He, L., Hyman, R.W., Davis, R.W., Azarani, A., Schlossman, S.F., Duke-Cohan, J.S. & Barsh, G.S. Nature 398, 152-6 (1999). [PubMed]
  137. Genomic profiling of drug sensitivities via induced haploinsufficiency.
    Giaever, G., Shoemaker, D.D., Jones, T.W., Liang, H., Winzeler, E.A., Astromoff, A. & Davis, R.W. Nat Genet 21, 278-83 (1999). [PubMed]
  138. On the in vivo function of the RecA ATPase.
    Campbell, M.J. & Davis, R.W. J Mol Biol 286, 437-45 (1999). [PubMed]
  139. Toxic mutations in the recA gene of E. coli prevent proper chromosome segregation.
    Campbell, M.J. & Davis, R.W. J Mol Biol 286, 417-35 (1999). [PubMed]
  140. An arrayable flow-through microcentrifuge for high-throughput instrumentation.
    Marziali, A., Willis, T.D. & Davis, R.W. Proc Natl Acad Sci U S A 96, 61-6 (1999). [PubMed]
  141. Plasmodium falciparum 3D7 chromosome 12 YAC B8-95 genomic sequence. GenBank: accession number AC006281.
    Hyman, R.W., Fung, E., Qin, F., Tomaki, T., Kurdi, O., Davis, R.W. (1999).
  142. Plasmodium falciparium 3D7 chromosome 12 YAC 614 genomic sequence. GenBank: accession number AC006279.
    Hyman, R.W., Fung, E., Qin, F., Tomaki, T., Kurdi, O., Davis, R.W. (1999).
  143. Plasmodium falciparum 3D7 chromosome 12 YAC 724 genomic sequence. GenBank: accession number AC006280.
    Hyman, R.W., Fung, E., Qin, F., Tomaki, T., Kurdi, O., Davis, R.W. (1999).
  144. Genes, Genomes and Chips, in DNA Microarrays: A Practical Approach.
    Schena, M., Davis, R.W. (ed. Schena, M.) 1-16 (Oxford University Press, Oxford, United Kingdom, 1999).
  145. Parallel analysis with Biological Chips.
    Schena, M., Davis, R.W. in PCR Applications 445-456 (Academic Press, 1999).
  146. Y-Chromosome evidence for a northward migration of modern humans into Eastern Asia during the last Ice Age.
    Su, B., Xiao, J., Underhill, P., Deka, R., Zhang, W., Akey, J., Huang, W., Shen, D., Lu, D., Luo, J., Chu, J., Tan, J., Shen, P., Davis, R., Cavalli-Sforza, L., Chakraborty, R., Xiong, M., Du, R., Oefner, P., Chen, Z. & Jin, L. Am J Hum Genet 65, 1718-24 (1999). [PubMed]
  147. A low rate of nucleotide changes in Escherichia coli K-12 estimated from a comparison of the genome sequences between two different substrains.
    Itoh T, Okayama T, Hashimoto H, Takeda J, Davis RW, Mori H, Gojobori T. FEBS Lett. 1999 Apr 30;450(1-2):72-6. [PubMed]
  148. Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis.
    Stephens, R.S., Kalman, S., Lammel, C., Fan, J., Marathe, R., Aravind, L., Mitchell, W., Olinger, L., Tatusov, R.L., Zhao, Q., Koonin, E.V. & Davis, R.W. Science 282, 754-9 (1998). [PubMed]
  149. An automated hydrodynamic process for controlled, unbiased DNA shearing.
    Thorstenson, Y.R., Hunicke-Smith, S.P., Oefner, P.J. & Davis, R.W. Genome Res 8, 848-55 (1998). [PubMed]
  150. Direct allelic variation scanning of the yeast genome.
    Winzeler, E.A., Richards, D.R., Conway, A.R., Goldstein, A.L., Kalman, S., McCullough, M.J., McCusker, J.H., Stevens, D.A., Wodicka, L., Lockhart, D.J. & Davis, R.W. Science 281, 1194-7 (1998). [PubMed]
  151. A genome-wide transcriptional analysis of the mitotic cell cycle.
    Cho, R.J., Campbell, M.J., Winzeler, E.A., Steinmetz, L., Conway, A., Wodicka, L., Wolfsberg, T.G., Gabrielian, A.E., Landsman, D., Lockhart, D.J. & Davis, R.W. Mol Cell 2, 65-73 (1998). [PubMed]
  152. Microarrays: biotechnology's discovery platform for functional genomics.
    Schena, M., Heller, R.A., Theriault, T.P., Konrad, K., Lachenmeier, E. & Davis, R.W. Trends Biotechnol 16, 301-6 (1998). [PubMed]
  153. Mapping cloned sequences on YACs.
    Agyare, F.D., Lagos, G., Lashkari, D., Davis, R.W. & Lemieux, B. Methods Mol Biol 82, 199-208 (1998). [no abstract available]
  154. Parallel analysis of genetic selections using whole genome oligonucleotide arrays.
    Cho, R.J., Fromont-Racine, M., Wodicka, L., Feierbach, B., Stearns, T., Legrain, P., Lockhart, D.J. & Davis, R.W. Proc Natl Acad Sci U S A 95, 3752-7 (1998). [PubMed]
  155. Plasmodium falciparum 3D7 chromosome 12 PFYAC812 genomic sequence. GenBank: accession number AC004153.
    Hyman, R.W., Qin, F., Fung, E.L., Conway, A.B., Davis, R.W. (1998).
  156. Plasmodium falciparum 3D7 chromosome 12 PFYAC293 genomic sequence. GenBank: accession number AC004157.
    Hyman, R.W., Qin, F., Fung, E.L., Conway, A.B., Davis, R.W. (1998).
  157. Plasmodium falciparum 3D7 chromosome 12 YAC 812 genomic sequence. GenBank: accession number AC004153.
    Hyman, R.W., Qin, F., Fung, E., Conway, A., Davis, R.W. (1998).
  158. Plasmodium falciparum 3D7 chromosome 12 YAC 69 genomic sequence. GenBank: accession number AC004688.
    Hyman, R.W., Qin, F., Fung, E., Conway, A., Davis, R.W. (1998).
  159. Plasmodium falciparum 3D7 chromosome 12 YAC 588 genomic sequence. GenBank: accession number AC004710.
    Hyman, R.W., Qin, F., Fung, E., Conway, A., Davis, R.W. (1998).
  160. Plasmodium falciparum 3D7 chromosome 12 YAC 1122 genomic sequence. GenBank: accession number AC004709. Hyman, R.W., Qin, F., Fung, E., Conway, A., Davis, R.W.(1998).
  161. Plasmodium falciparum 3D7 chromosome 12 YAC B8-420 genomic sequence. GenBank: accession number AC005140.
    Hyman, R.W., Fung, E., Qin, F., Conway, A., Davis, Ronald W. (1998).
  162. Plasmodium falciparum 3D7 chromosome 12 YAC 336 genomic sequence. GenBank: accession number AC005139.
    Hyman, R.W., Fung, E., Qin, F., Conway, A., Davis, R.W. (1998).
  163. Plasmodium falciparum 3D7 chromosome 12 YAC 492 genomic sequence. GenBank: accession number AC005308.
    Hyman, R.W., Fung, E., Qin, F., Conway, A., Davis, R.W. (1998).
  164. Plasmodium falciparum 3D7 chromosome 12 YAC 1383 genomic sequence. GenBank: accession number AC005504.
    Hyman, R.W., Fung, E., Qin, F., Conway, A.B., Davis, R.W. (1998).
  165. Plasmodium falciparum 3D7 chromosome 12 YAC 181 genomic sequence. GenBank: accession number AC005505.
    Hyman, R.W., Qin, F., Fung, E.L., Conway, A.B., Davis, R.W. (1998).
  166. Plasmodium falciparum 3D7 chromosome 12 YAC 357 genomic sequence. GenBank: accession number AC005506.
    Hyman, R.W., Qin, F., Fung, E.L., Conway, A.B., Davis, R.W. (1998).
  167. Plasmodium falciparum 3D7 chromosome 12 YAC B8-628 genomic sequence. GenBank: accession number AC005507.
    Hyman, R.W., Qin, F., Fung, E.L., Conway, A.B., Davis, R.W. (1998).
  168. Panorama of Y chromosome SNP haplotype diversity in Pakistan.
    Underhill, P.A., Mehdi, S.Q., Cavalli-Sforza, L.L., Davis, R.W., Oefner, P.J. Am. J. Hum. Genet 63 [Suppl.], A223 (1998). [no abstract available]
  169. Functional analysis of the yeast genome.
    Winzeler, E.A. & Davis, R.W. Curr Opin Genet Dev 7, 771-6 (1997). [PubMed]
  170. Yeast microarrays for genome wide parallel genetic and gene expression analysis.
    Lashkari, D.A., DeRisi, J.L., McCusker, J.H., Namath, A.F., Gentile, C., Hwang, S.Y., Brown, P.O. & Davis, R.W. Proc Natl Acad Sci U S A 94, 13057-62 (1997). [PubMed]
  171. Detection of numerous Y chromosome biallelic polymorphisms by denaturing high-performance liquid chromatography.
    Underhill, P.A., Jin, L., Lin, A.A., Mehdi, S.Q., Jenkins, T., Vollrath, D., Davis, R.W., Cavalli-Sforza, L.L. & Oefner, P.J. Genome Res 7, 996-1005 (1997). [PubMed]
  172. Whole genome analysis: experimental access to all genome sequenced segments through larger-scale efficient oligonucleotide synthesis and PCR.
    Lashkari, D.A., McCusker, J.H. & Davis, R.W. Proc Natl Acad Sci U S A 94, 8945-7 (1997). [PubMed]
  173. Ca(2+)-activated anion channels and membrane depolarizations induced by blue light and cold in Arabidopsis seedlings.
    Lewis, B.D., Karlin-Neumann, G., Davis, R.W. & Spalding, E.P. Plant Physiol 11, 1327-34 (1997). [PubMed]
  174. Application of DNA typing methods and genetic analysis to epidemiology and taxonomy of Saccharomyces isolates.
    Clemons, K.V., Park, P., McCusker, J.H., McCullough, M.J., Davis, R.W. & Stevens, D.A. J Clin Microbiol 35, 1822-8 (1997). [PubMed]
  175. The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI.
    Bussey, H., Storms, R.K., Ahmed, A., Albermann, K., Allen, E., Ansorge, W., Araujo, R., Aparicio, A., Barrell, B., Badcock, K., Benes, V., Botstein, D., Bowman, S., Bruckner, M., Carpenter, J., Cherry, J.M., Chung, E., Churcher, C., Coster, F., Davis, K., Davis, R.W., Dietrich, F.S., Delius, H., DiPaolo, T., Hani, J. & et al. Nature 387, 103-5 (1997). [PubMed]
  176. Discovery and analysis of inflammatory disease-related genes using cDNA microarrays.
    Heller, R.A., Schena, M., Chai, A., Shalon, D., Bedilion, T., Gilmore, J., Woolley, D.E. & Davis, R.W. Proc Natl Acad Sci U S A 94, 2150-5 (1997). [PubMed]
  177. Mapping expressed sequence tag sites on yeast artificial chromosome clones of Arabidopsis thaliana DNA.
    Agyare, F.D., Lashkari, D.A., Lagos, A., Namath, A.F., Lagos, G., Davis, R.W. & Lemieux, B. Genome Res 7, 1-9 (1997). [PubMed]
  178. The nucleotide sequence of Saccharomyces cerevisiae chromosome V.
    Dietrich, F.S., Mulligan, J., Hennessy, K., Yelton, M.A., Allen, E., Araujo, R., Aviles, E., Berno, A., Brennan, T., Carpenter, J., Chen, E., Cherry, J.M., Chung, E., Duncan, M., Guzman, E., Hartzell, G., Hunicke-Smith, S., Hyman, R.W., Kayser, A., Komp, C., Lashkari, D., Lew, H., Lin, D., Mosedale, D., Nakahara, K., Namath, A., Norgren, R. Oefner, P., Oh, C., Petel, F.X., Roberts, D., Sehl, P., Schramm, S., Shogren, T., Smith, V., Taylor, P., Wei, Y., Botstein, D., Davis, R.W. Nature 387, 78-81 (1997). [PubMed]
  179. Automation for the Arabidopsis genome sequencing project.
    Marziali, A., Federspiel, N., and Davis, R.W. Trends in Plant Science 2, 71-74 (1997).
  180. Escherichia coli chromosome minutes 9-11. Genbank: accession number U82664.
    Roberts, D., Allen, E., Araujo, R., Aparicio, A., Chung, E., Davis, K., Duncan, M., Federspiel, N., Hyman, R. W., Kalman, S., Komp, C., Kurdi, O., Lew, H., Lin, D., Namath, A., Oefner, P., Schramm, S., Davis, R.W. (1997).
  181. Escherichia coli chromosome minutes 9-12. Genbank: accession number U82598.
    Chung, E., Allen, E., Araujo,R., Aparicio, A., Davis, K., Duncan, M., Federspiel, N., Hyman, R.W., Kalman, S., Komp, C., Kurdi, O., Lew, H., Lin, D., Namath, A., Oefner, P., Schramm, S., Davis, R.W. (1997).
  182. The nucleotide sequence of chromosome IV.
    Jacq, C., Davis, R.W., et al. (144 co-authors). Nature 387 suppl, 75-78 (1997).
  183. Human chromosome Y cosmid 30H9 genomic sequence. GenBank: accession number AC003031.
    Shen, P., Chung, E., Hyman, R.W., Roberts, D., Schramm, S., Vollrath, D., Davis, R.W. (1997).
  184. Human chromosome Y cosmid 7A1 genomic sequence. GenBank: accession number AC003032.
    Thorstenson, Y., Au, M., Chung, E., Hyman, R., Schramm, S., Vollrath, D., Davis, R.W. (1997).
  185. Human chromosome Y cosmid 16E4 genomic sequence. GenBank: accession number AC003094.
    Hyman, R.W., Chung, E., Kurdi, O., Roberts, D., Schramm, S., Vollrath, D., Davis, R.W. (1997).
  186. Human chromosome Y cosmid 54E8 genomic sequence. GenBank: accession number AC003095.
    Hyman, R.W., Vollrath, D., Davis, R.W. (1997).
  187. Human chromosome Y cosmid 56B5 genomic sequence. GenBank: accession number AC003097.
    Lin, D., Chung, E., Hyman, R.W., Schramm, S., Vollrath, D., Davis, R.W. (1997).
  188. Human chromosome 1 BAC 13512 genomic sequence. GenBank: accession number AC003115.
    Hyman, R.W., Babb, V., Chung, E., Kurdi, O., Rexan, M., Vollrath, D., Davis, R.W. (1997).
  189. Human chromosome 1 BAC 308G1 genomic sequence. GenBank: accession number AC003117.
    Fan, J., Babb, V., Hyman, R.W., Kalman, S., Kurdi, O., Marathe, R., Rexan, M., Vollrath, D., Davis, R.W. (1997).
  190. Human chromosome 1 BAC 89N6 genomic sequence. GenBank: accession number AC003118.
    Chung, E., Babb, V., Hyman, R.W., Kurdi, O., Rexan, M., Vollrath, D., Davis, Ronald W. (1997).
  191. Autosomal DNA haplotypes distinguish ancient human migrations.
    Jin, L., Underhill, P.A., Doctor, V., Cavalli-Sforza, L.L., Davis, R., Oefner, P.J. Am. J. Hum. Genet 61 [Suppl.], A201 (1997).
  192. An African origin of human Y chromosomes.
    Underhill, P.A., Jin, L., Lin, A., Chan, C., Shen, P., Kauffman, E., Choi, L., Hurlbut, A., Cavalli-Sforza, L.L., Mehdi, S.Q., Jenkins, T., Seielstad, M.T., Wells, R.S., Ibrahim, M., Vollrath, D., Hyman, R., Davis, R., Oefner, P.J. Am. J. Hum. Genet 61 [Suppl.], A18 (1997)
  193. CDP1, a novel Saccharomyces cerevisiae gene required for proper nuclear division and chromosome segregation.
    Foreman, P.K. & Davis, R.W. Genetics 144, 1387-97 (1996). [PubMed]
  194. Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy.
    Shoemaker, D.D., Lashkari, D.A., Morris, D., Mittmann, M. & Davis, R.W. Nat Genet 14, 450-6 (1996). [PubMed]
  195. Life with 6000 genes.
    Goffeau, A., Barrell, B.G., Bussey, H., Davis, R.W., Dujon, B., Feldmann, H., Galibert, F., Hoheisel, J.D., Jacq, C., Johnston, M., Louis, E.J., Mewes, H.W., Murakami, Y., Philippsen, P., Tettelin, H. & Oliver, S.G. Science 274, 546, 563-7 (1996). [PubMed]
  196. Efficient random subcloning of DNA sheared in a recirculating point-sink flow system.
    Oefner, P.J., Hunicke-Smith, S.P., Chiang, L., Dietrich, F., Mulligan, J. & Davis, R.W. Nucleic Acids Res 24, 3879-86 (1996). [PubMed]
  197. Parallel human genome analysis: microarray-based expression monitoring of 1000 genes.
    Schena, M., Shalon, D., Heller, R., Chai, A., Brown, P.O. & Davis, R.W. Proc Natl Acad Sci U S A 93, 10614-9 (1996). [PubMed]
  198. Application of DNA typing methods and genetic analysis to epidemiology and taxonomy of Saccharomyces.
    Clemons, K.V., Park, P.S., McCusker, J.H., Davis, R.W., Stevens, D.A. J. Infec. Dis (1996).
  199. After period of gestation, DNA chips coming of age.
    O’Connell, J.P., Davis, Ronald W., Chee, M., Lockhart, D.J., Fodor, S.P., Collins, F. Chem. & Eng. News (1996).
  200. Yeast Artificial Chromosome (YAC) construction and applications.
    Loehrlein, C., Davis, Ronald W. in Encyclopedia of Molecular Biology and Molecular Medicine, Vol. 6 (ed. Meyers, R.A.) 291-302 (VCH Publishers, Weinheim, 1996).
  201. Saccharomyces cerevisiae chromosome XVI left arm from MMN to PH085. Genbank: accession number U44030.
    Dietrich, F.S., Allen, E., Araujo, R., Aparicio, A., Carpenter, J., Cherry, J.M., Chung, E., E., Davis, K., Duncan, M., Hunicke-Smith, S., Hyman, R.W., Kalman, S., Komp, C., Kurdi, O., Lashkari, D., Lew, H., Lin, A., Lin, D., Marathe, R., Mirtipati, S., Namath, A., Oefner, P., Petel, F., Roberts, D., Schramm, S., Schroeder, M., Botstein, D., Davis, Ronald W. (1996).
  202. Escherichia coli chromosome minutes 4-6. Genbank: accession number U70214.
    Schramm, S., Duncan, M., Allen, E., Araujo, R., Aparicio, A., Chung, E., Davis, K., Federspiel, N., Hyman, R.W., Kalman, S., Komp, C., Kurdi, O., Lashkari, D., Lew, H., Lin, D., Namath, A., Oefner, P., Roberts, D., Davis, Ronald W. (1996).
  203. Escherichia coli chromosome minutes 6-8. Genbank: accession number U73857.
    Duncan, M., Allen, E., Araujo, R., Aparicio, A., Chung, E., Davis, K., Federspiel, N., Hyman, R.W., Kalman, S., Komp, C., Kurdi, O., Lew, H., Lin, D., Namath, A., Oefner, P., Roberts, D., Schramm, S., Davis, Ronald W. (1996).
  204. Amassing a wealth of Y chromosome polymorphisms for evolutionary studies.
    Underhill, P.A., Jin, L., Cavalli-Sforza, L.L., Davis, R., Oefner, P.J. Am. J. Hum. Genet 59 [Suppl.], A30 (1996).
  205. Sequencing the Chlamydia trachomatis Genome.
    Kalman, S.S., Araujo, R., Chung, E., Dietrich, F., Komp, C., Otto, G., Lew, H., Lin, D., Marathe, R., Mirthipati, S., Namath, A., Oefner, P., Davis, R.W., Stephens, R. Microbial & Comparative Genomics 1, 236 (1996).
  206. Mapping and Sequencing of the Arabidopsis Genome.
    Dewar, K., Dunn, P.J., Li, Y.-P., Kim, C.J., Ecker, J.R., Federspiel, N.A., Dietrich, F., Marziali, A., Oefner, P., Norgren, R., Davis, R.W., Vysotskaia, V., Yu, Q., Theologis, A. Microbial & Comparative Genomics 1, 204 (1996).
  207. High-Throughput Differential Genome Analysis by Denaturing HPLC.
    Oefner, P.J., Underhill, P.A., Grill, E.A., Cho, R.J., Jin, L., Cavalli-Sforza, L.L., Davis, R.W. Microbial & Comparative Genomics 1, 245 (1996).
  208. Electrophoresis using contour-clamped electric fields.
    Chu, G., Vollrath, D., Davis, R. (The Board of Trustees of the Leland Stanford Junior University, USA, 1996).
  209. Quantitative monitoring of gene expression patterns with a complementary DNA microarray.
    Schena, M., Shalon, D., Davis, R.W. & Brown, P.O. Science 270, 467-70 (1995). [PubMed]
  210. An automated multiplex oligonucleotide synthesizer: development of high-throughput, low-cost DNA synthesis.
    Lashkari, D.A., Hunicke-Smith, S.P., Norgren, R.M., Davis, R.W. & Brennan, T. Proc Natl Acad Sci U S A 92, 7912-5 (1995). [PubMed]
  211. Sliding-plate gel caster.
    Lashkari, D.A., Norgren, R.M. & Davis, R.W. Biotechniques 18, 625-6 (1995). [no abstract available]
  212. Pathogenicity of Saccharomyces cerevisiae in complement factor five-deficient mice.
    Byron, J.K., Clemons, K.V., McCusker, J.H., Davis, R.W. & Stevens, D.A. Infect Immun 63, 478-85 (1995). [PubMed]
  213. The sequence of Saccharomyces cerevisiae chromosome IV right. Genbank: accession numbers U33057, U33050, U33007, U32274, and U43834.
    Dietrich, F.S., Mulligan, J., Hennesy, K., Allen, E., Araujo, R., Aviles, E., Berno, A., Brennan, T., Carpenter, J., Chen, E., Cherry, J.M., Chung, E., Duncan, M., Guzman, E., Hartzell, G., Hunicke-Smith, S., Hyman, R.W., Kayser, A., Komp, C., Lashkari, D., Lew, H., Lin, D., Mosedale, D., Nakahara, K., Namath, A., Norgren, R., Oefner, P., Oh, C., Petel, F., Roberts, D., Sehl, P., Schramm, S., Shogren, T., Smith, V., Taylor, P., Wei, Y., Yelton, M., Botstein, D., Davis, Ronald W. (1995).
  214. Saccharomyces cerevisiae virulence phenotype as determined with CD-1 mice is associated with the ability to grow at 42 degrees C and form pseudohyphae.
    McCusker, J.H., Clemons, K.V., Stevens, D.A. & Davis, R.W. Infect Immun 62, 5447-55 (1994). [PubMed]
  215. The TTG gene is required to specify epidermal cell fate and cell patterning in the Arabidopsis root.
    Galway, M.E., Masucci, J.D., Lloyd, A.M., Walbot, V., Davis, R.W. & Schiefelbein, J.W. Dev Biol 166, 740-54 (1994). [PubMed]
  216. Epidermal cell fate determination in Arabidopsis: patterns defined by a steroid-inducible regulator
    Lloyd, A.M., Schena, M., Walbot, V. & Davis, R.W. . Science 266, 436-9 (1994). [PubMed]
  217. Structure of homeobox-leucine zipper genes suggests a model for the evolution of gene families.
    Schena, M. & Davis, R.W. Proc Natl Acad Sci U S A 91, 8393-7 (1994). [PubMed]
  218. Cloning vectors for the synthesis of epitope-tagged, truncated and chimeric proteins in Saccharomyces cerevisiae.
    Foreman, P.K. & Davis, R.W. Gene 144, 63-8 (1994). [PubMed]
  219. Tetrad analysis possible in Arabidopsis with mutation of the QUARTET (QRT) genes.
    Preuss, D., Rhee, S.Y. & Davis, R.W. Science 264, 1458-60 (1994). [PubMed]
  220. Genetic characterization of pathogenic Saccharomyces cerevisiae isolates.
    McCusker, J.H., Clemons, K.V., Stevens, D.A. & Davis, R.W. Genetics 136, 1261-9 (1994). [PubMed]
  221. Functional expression of the yeast FLP/FRT site-specific recombination system in Nicotiana tabacum.
    Lloyd, A.M. & Davis, R.W. Mol Gen Genet 242, 653-7 (1994). [PubMed]
  222. Comparative pathogenesis of clinical and nonclinical isolates of Saccharomyces cerevisiae.
    Clemons KV, McCusker JH, Davis RW, Stevens DA. J Infect Dis. 1994 Apr;169(4):859-67. [PubMed]
  223. The complete sequence of Saccharomyces cerevisiae chromosome V. Genbank, : accession numbers U18795, U18779, U18530, U18778, U18796, U18813, U18814, U18839, U18916, U18917, and U18922.
    Dietrich, F.S., Mulligan, J., Hennesy, K., Allen, E., Araujo, R., Aviles, E., Berno, A., Brennan, T., Carpenter, J., Chen, E., Cherry, J.M., Chung, E., Duncan, M., Guzman, E., Hartzell, G., Hunicke-Smith, S., Hyman, R.W., Kayser, A., Komp, C., Lashkari, D., Lew, H., Lin, D., Mosedale, D., Nakahara, K., Namath, A., Norgren, R., Oefner, P., Oh, C., Petel, F., Roberts, D., Sehl, P., Schramm, S., Shogren, T., Smith, V., Taylor, P., Wei, Y., Yelton, M., Botstein, D., Davis, Ronald W. (1994)
  224. Point mutations that separate the role of Saccharomyces cerevisiae centromere binding factor 1 in chromosome segregation from its role in transcriptional activation.
    Foreman, P.K. & Davis, R.W. Genetics 135, 287-96 (1993). [PubMed]
  225. A conditional sterile mutation eliminates surface components from Arabidopsis pollen and disrupts cell signaling during fertilization.
    Preuss, D., Lemieux, B., Yen, G. & Davis, R.W. Genes Dev 7, 974-85 (1993). [PubMed]
  226. The HAT4 gene of Arabidopsis encodes a developmental regulator.
    Schena, M., Lloyd, A.M. & Davis, R.W. Genes Dev 7, 367-79 (1993). [PubMed]
  227. A dominant truncation allele identifies a gene, STE20, that encodes a putative protein kinase necessary for mating in Saccharomyces cerevisiae.
    Ramer, S.W. & Davis, R.W. Proc Natl Acad Sci U S A 90, 452-6 (1993). [PubMed]
  228. Arabidopsis and Nicotiana anthocyanin production activated by maize regulators R and C1.
    Lloyd, A.M., Walbot, V. & Davis, R.W. Science 258, 1773-5 (1992). [PubMed]
  229. Dominant genetics using a yeast genomic library under the control of a strong inducible promoter.
    Ramer, S.W., Elledge, S.J. & Davis, R.W. Proc Natl Acad Sci U S A 89, 11589-93 (1992). [PubMed]
  230. ATP hydrolysis and the displaced strand are two factors that determine the polarity of RecA-promoted DNA strand exchange.
    Konforti, B.B. & Davis, R.W. J Mol Biol 227, 38-53 (1992). [PubMed]
  231. HD-Zip proteins: members of an Arabidopsis homeodomain protein superfamily.
    Schena, M. & Davis, R.W