Mark J. Schnitzer

Publications

• Long-term dynamics of CA1 hippocampal place codes. Ziv Y, Burns LD, Cocker ED, Hamel EO, Ghosh KK, Kitch LJ, El Gamal A, Schnitzer MJ. Nat Neurosci. 2013; 16 (3): 264-6
• Photon shot noise limits on optical detection of neuronal spikes and estimation of spike timing. Wilt BA, Fitzgerald JE, Schnitzer MJ. Biophys J. 2013; 104 (1): 51-62
• Estimation theoretic measure of resolution for stochastic localization microscopy. Fitzgerald JE, Lu J, Schnitzer MJ. Phys Rev Lett. 2012; 109 (4): 048102
• Improving FRET dynamic range with bright green and red fluorescent proteins. Lam AJ, St-Pierre F, Gong Y, Marshall JD, Cranfill PJ, Baird MA, McKeown MR, Wiedenmann J, Davidson MW, Schnitzer MJ, Tsien RY, Lin MZ. Nat Methods. 2012; 9 (10): 1005-12
• Two-photon optogenetic toolbox for fast inhibition, excitation and bistable modulation. Prakash R, Yizhar O, Grewe B, Ramakrishnan C, Wang N, Goshen I, Packer AM, Peterka DS, Yuste R, Schnitzer MJ, Deisseroth K. Nat Methods. 2012; 9 (12): 1171-9
• Unified resolution bounds for conventional and stochastic localization fluorescence microscopy. Mukamel EA, Schnitzer MJ. Phys Rev Lett. 2012; 109 (16): 168102
• An infrared fluorescent protein for deeper imaging. Lecoq J, Schnitzer MJ. Nat Biotechnol. 2011; 29 (8): 715-6
• Defining the computational structure of the motion detector in Drosophila. Clark DA, Bursztyn L, Horowitz MA, Schnitzer MJ, Clandinin TR. Neuron. 2011; 70 (6): 1165-77
• Miniaturized integration of a fluorescence microscope. Ghosh KK, Burns LD, Cocker ED, Nimmerjahn A, Ziv Y, Gamal AE, Schnitzer MJ. Nat Methods. 2011; 8 (10): 871-8
• Symmetries in stimulus statistics shape the form of visual motion estimators. Fitzgerald JE, Katsov AY, Clandinin TR, Schnitzer MJ. Proc Natl Acad Sci U S A. 2011; 108 (31): 12909-14
• Time-lapse imaging of disease progression in deep brain areas using fluorescence microendoscopy. Barretto RP, Ko TH, Jung JC, Wang TJ, Capps G, Waters AC, Ziv Y, Attardo A, Recht L, Schnitzer MJ. Nat Med. 2011; 17 (2): 223-8
• Journal club. A neuroscientist learns about algorithms for motor learning. Schnitzer MJ, Nature. 2010; 463 (7279): 273
• Advances in light microscopy for neuroscience. Wilt BA, Burns LD, Wei Ho ET, Ghosh KK, Mukamel EA, Schnitzer MJ. Annu Rev Neurosci. 2009: 32 435-506
• Automated analysis of cellular signals from large-scale calcium imaging data. Mukamel EA, Nimmerjahn A, Schnitzer MJ. Neuron. 2009; 63 (6): 747-60
• In vivo brain imaging using a portable 2.9 g two-photon microscope based on a microelectromechanical systems scanning mirror. Piyawattanametha W, Cocker ED, Burns LD, Barretto RP, Jung JC, Ra H, Solgaard O, Schnitzer MJ. Opt Lett. 2009; 34 (15): 2309-11
• In vivo fluorescence imaging with high-resolution microlenses. Barretto RP, Messerschmidt B, Schnitzer MJ. Nat Methods. 2009; 6 (7): 511-2
• Motor behavior activates Bergmann glial networks. Nimmerjahn A, Mukamel EA, Schnitzer MJ. Neuron. 2009; 62 (3): 400-12
• High-speed, miniaturized fluorescence microscopy in freely moving mice. Flusberg BA, Nimmerjahn A, Cocker ED, Mukamel EA, Barretto RP, Ko TH, Burns LD, Jung JC, Schnitzer MJ. Nat Methods. 2008; 5 (11): 935-8
• Lock-and-key mechanisms of cerebellar memory recall based on rebound currents. Wetmore DZ, Mukamel EA, Schnitzer MJ. J Neurophysiol. 2008; 100 (4): 2328-47
• Minimally invasive high-speed imaging of sarcomere contractile dynamics in mice and humans. Llewellyn ME, Barretto RP, Delp SL, Schnitzer MJ. Nature. 2008; 454 (7205): 784-8
• Fast-scanning two-photon fluorescence imaging based on a microelectromechanical systems two- dimensional scanning mirror. Piyawattanametha W, Barretto RP, Ko TH, Flusberg BA, Cocker ED, Ra H, Lee D, Solgaard O, Schnitzer MJ. Opt Lett. 2006; 31 (13): 2018-20
• In vivo imaging of mammalian cochlear blood flow using fluorescence microendoscopy. Monfared A, Blevins NH, Cheung EL, Jung JC, Popelka G, Schnitzer MJ. Otol Neurotol. 2006; 27 (2): 144-52
• Next-generation optical technologies for illuminating genetically targeted brain circuits. Deisseroth K, Feng G, Majewska AK, Miesenböck G, Ting A, Schnitzer MJ. J Neurosci. 2006; 26 (41): 10380-6
• Fiber-optic fluorescence imaging. Flusberg BA, Cocker ED, Piyawattanametha W, Jung JC, Cheung EL, Schnitzer MJ. Nat Methods. 2005; 2 (12): 941-50
• In vivo brain imaging using a portable 3.9 gram two-photon fluorescence microendoscope. Flusberg BA, Jung JC, Cocker ED, Anderson EP, Schnitzer MJ. Opt Lett. 2005; 30 (17): 2272-4
• Retinal coding of visual scenes -- repetitive and redundant too? Mukamel EA, Schnitzer MJ. Neuron. 2005; 46 (3): 357-9
• Statistical kinetics of macromolecular dynamics. Shaevitz JW, Block SM, Schnitzer MJ. Biophys J. 2005; 89 (4): 2277-85
• Fiber optic in vivo imaging in the mammalian nervous system. Mehta AD, Jung JC, Flusberg BA, Schnitzer MJ. Curr Opin Neurobiol. 2004; 14 (5): 617-28
• In vivo mammalian brain imaging using one- and two-photon fluorescence microendoscopy. Jung JC, Mehta AD, Aksay E, Stepnoski R, Schnitzer MJ. J Neurophysiol. 2004; 92 (5): 3121-33
• Multineuronal firing patterns in the signal from eye to brain. Schnitzer MJ, Meister M. Neuron. 2003; 37 (3): 499-511
• Multiphoton endoscopy. Jung JC, Schnitzer MJ. Opt Lett. 2003; 28 (11): 902-4
• Biological computation: amazing algorithms. Schnitzer MJ, Nature. 2002; 416 (6882): 683
• Molecular motors. Doing a rotary two-step. Schnitzer MJ, Nature. 2001; 410 (6831): 878-9, 881
• Force production by single kinesin motors. Schnitzer MJ, Visscher K, Block SM. Nat Cell Biol. 2000; 2 (10): 718-23
• Single kinesin molecules studied with a molecular force clamp. Visscher K, Schnitzer MJ, Block SM. Nature. 1999; 400 (6740): 184-9
• Force and velocity measured for single molecules of RNA polymerase. Wang MD, Schnitzer MJ, Yin H, Landick R, Gelles J, Block SM. Science. 1998; 282 (5390): 902-7
• Kinesin hydrolyses one ATP per 8-nm step. Schnitzer MJ, Block SM. Nature. 1997; 388 (6640): 386-90
• Statistical kinetics of processive enzymes. Schnitzer MJ, Block SM. Cold Spring Harb Symp Quant Biol. 1995: 60 793-802
• Theory of continuum random walks and application to chemotaxis. Schnitzer MJ, Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1993; 48 (4): 2553-2568