Ronald W. Davis

Publications

• Classification of patients from time-course gene expression. Zhang Y, Tibshirani R, Davis R. Biostatistics. 2013; 14 (1): 87-98
• Genomic responses in mouse models poorly mimic human inflammatory diseases. Seok J, Warren HS, Cuenca AG, Mindrinos MN, Baker HV, Xu W, Richards DR, McDonald-Smith GP, Gao H, Hennessy L, Finnerty CC, López CM, Honari S, Moore EE, Minei JP, Cuschieri J, Bankey PE, Johnson JL, Sperry J, Nathens AB, Billiar TR, West MA, Jeschke MG, Klein MB, Gamelli RL, Gibran NS, Brownstein BH, Miller-Graziano C, Calvano SE, Mason PH, Cobb JP, Rahme LG, Lowry SF, Maier RV, Moldawer LL, Herndon DN, Davis RW, Xiao W, Tompkins RG. Proc Natl Acad Sci U S A. 2013; 110 (9): 3507-12
• Microneedle Biosensor: A Method for Direct Label-free Real Time Protein Detection. Esfandyarpour R, Esfandyarpour H, Javanmard M, Harris JS, Davis RW. Sens Actuators B Chem. 2013: 177 848-855
• A peripheral blood diagnostic test for acute rejection in renal transplantation. Li L, Khatri P, Sigdel TK, Tran T, Ying L, Vitalone MJ, Chen A, Hsieh S, Dai H, Zhang M, Naesens M, Zarkhin V, Sansanwal P, Chen R, Mindrinos M, Xiao W, Benfield M, Ettenger RB, Dharnidharka V, Mathias R, Portale A, McDonald R, Harmon W, Kershaw D, Vehaskari VM, Kamil E, Baluarte HJ, Warady B, Davis R, Butte AJ, Salvatierra O, Sarwal MM. Am J Transplant. 2012; 12 (10): 2710-8
• A rapid, cost-effective method of assembly and purification of synthetic DNA probes >100 bp. Jensen MA, Jauregui L, Davis RW. PLoS One. 2012; 7 (4): e34373
• Cationic amphiphilic drugs are potent inhibitors of yeast sporulation. Schlecht U, St Onge RP, Walther T, François JM, Davis RW. PLoS One. 2012; 7 (8): e42853
• Coding SNPs as intrinsic markers for sample tracking in large-scale transcriptome studies. Xu W, Gao H, Seok J, Wilhelmy J, Mindrinos MN, Davis RW, Xiao W. Biotechniques. 2012; 52 (6): 386-8
• High-throughput, high-fidelity HLA genotyping with deep sequencing. Wang C, Krishnakumar S, Wilhelmy J, Babrzadeh F, Stepanyan L, Su LF, Levinson D, Fernandez-Viña MA, Davis RW, Davis MM, Mindrinos M. Proc Natl Acad Sci U S A. 2012; 109 (22): 8676-81
• Identification of drug targets by chemogenomic and metabolomic profiling in yeast. Wu M, Zheng M, Zhang W, Suresh S, Schlecht U, Fitch WL, Aronova S, Baumann S, Davis R, St Onge R, Dill DL, Peltz G. Pharmacogenet Genomics. 2012; 22 (12): 877-86
• Improvement in cell capture throughput using parallel bioactivated microfluidic channels. Javanmard M, Babrzadeh F, Nyrén P, Davis RW. Biomed Microdevices. 2012; 14 (4): 625-9
• JETTA: junction and exon toolkits for transcriptome analysis. Seok J, Xu W, Gao H, Davis RW, Xiao W. Bioinformatics. 2012; 28 (9): 1274-5
• Knowledge-based reconstruction of mRNA transcripts with short sequencing reads for transcriptome research. Seok J, Xu W, Jiang H, Davis RW, Xiao W. PLoS One. 2012; 7 (2): e31440
• Microfluidic diagnostic tool for the developing world: contactless impedance flow cytometry. Emaminejad S, Javanmard M, Dutton RW, Davis RW. Lab Chip. 2012; 12 (21): 4499-507
• Multiplex assay for condition-dependent changes in protein-protein interactions. Schlecht U, Miranda M, Suresh S, Davis RW, St Onge RP. Proc Natl Acad Sci U S A. 2012; 109 (23): 9213-8
• Single cell profiling of circulating tumor cells: transcriptional heterogeneity and diversity from breast cancer cell lines. Powell AA, Talasaz AH, Zhang H, Coram MA, Reddy A, Deng G, Telli ML, Advani RH, Carlson RW, Mollick JA, Sheth S, Kurian AW, Ford JM, Stockdale FE, Quake SR, Pease RF, Mindrinos MN, Bhanot G, Dairkee SH, Davis RW, Jeffrey SS. PLoS One. 2012; 7 (5): e33788
• The Human OligoGenome Resource: a database of oligonucleotide capture probes for resequencing target regions across the human genome. Newburger DE, Natsoulis G, Grimes S, Bell JM, Davis RW, Batzoglou S, Ji HP. Nucleic Acids Res. 2012; 40 (Database issue): D1137-43
• The dynamics of the vaginal microbiome during infertility therapy with in vitro fertilization-embryo transfer. Hyman RW, Herndon CN, Jiang H, Palm C, Fukushima M, Bernstein D, Vo KC, Zelenko Z, Davis RW, Giudice LC. J Assist Reprod Genet. 2012; 29 (2): 105-15
• Whole-genome sequencing of the efficient industrial fuel-ethanol fermentative Saccharomyces cerevisiae strain CAT-1. Babrzadeh F, Jalili R, Wang C, Shokralla S, Pierce S, Robinson-Mosher A, Nyren P, Shafer RW, Basso LC, de Amorim HV, de Oliveira AJ, Davis RW, Ronaghi M, Gharizadeh B, Stambuk BU. Mol Genet Genomics. 2012; 287 (6): 485-94
• High-quality DNA sequence capture of 524 disease candidate genes. Shen P, Wang W, Krishnakumar S, Palm C, Chi AK, Enns GM, Davis RW, Speed TP, Mindrinos MN, Scharfe C. Proc Natl Acad Sci U S A. 2011; 108 (16): 6549-54
• High-throughput VDJ sequencing for quantification of minimal residual disease in chronic lymphocytic leukemia and immune reconstitution assessment. Logan AC, Gao H, Wang C, Sahaf B, Jones CD, Marshall EL, Buño I, Armstrong R, Fire AZ, Weinberg KI, Mindrinos M, Zehnder JL, Boyd SD, Xiao W, Davis RW, Miklos DB. Proc Natl Acad Sci U S A. 2011; 108 (52): 21194-9
• Human transcriptome array for high-throughput clinical studies. Xu W, Seok J, Mindrinos MN, Schweitzer AC, Jiang H, Wilhelmy J, Clark TA, Kapur K, Xing Y, Faham M, Storey JD, Moldawer LL, Maier RV, Tompkins RG, Wong WH, Davis RW, Xiao W. Proc Natl Acad Sci U S A. 2011; 108 (9): 3707-12
• Identification of rare DNA variants in mitochondrial disorders with improved array-based sequencing. Wang W, Shen P, Thiyagarajan S, Lin S, Palm C, Horvath R, Klopstock T, Cutler D, Pique L, Schrijver I, Davis RW, Mindrinos M, Speed TP, Scharfe C. Nucleic Acids Res. 2011; 39 (1): 44-58
• The automated cell: compound and environment screening system (ACCESS) for chemogenomic screening. Proctor M, Urbanus ML, Fung EL, Jaramillo DF, Davis RW, Nislow C, Giaever G. Methods Mol Biol. 2011: 759 239-69
• A direct comparison of the KB™ Basecaller and phred for identifying the bases from DNA sequencing using chain termination chemistry. Hyman RW, Jiang H, Fukushima M, Davis RW. BMC Res Notes. 2010: 3 257
• A molecular inversion probe assay for detecting alternative splicing. Lin S, Wang W, Palm C, Davis RW, Juneau K. BMC Genomics. 2010: 11 712
• A universal TagModule collection for parallel genetic analysis of microorganisms. Oh J, Fung E, Price MN, Dehal PS, Davis RW, Giaever G, Nislow C, Arkin AP, Deutschbauer A. Nucleic Acids Res. 2010; 38 (14): e146
• Analysis of factorial time-course microarrays with application to a clinical study of burn injury. Zhou B, Xu W, Herndon D, Tompkins R, Davis R, Xiao W, Wong WH, Toner M, Warren HS, Schoenfeld DA, Rahme L, McDonald-Smith GP, Hayden D, Mason P, Fagan S, Yu YM, Cobb JP, Remick DG, Mannick JA, Lederer JA, Gamelli RL, Silver GM, West MA, Shapiro MB, Smith R, Camp DG, Qian W, Storey J, Mindrinos M, Tibshirani R, Lowry S, Calvano S, Chaudry I, West MA, Cohen M, Moore EE, Johnson J, Moldawer LL, Baker HV, Efron PA, Balis UG, Billiar TR, Ochoa JB, Sperry JL, Miller-Graziano CL, De AK, Bankey PE, Finnerty CC, Jeschke MG, Minei JP, Arnoldo BD, Hunt JL, Horton J, Cobb JP, Brownstein B, Freeman B, Maier RV, Nathens AB, Cuschieri J, Gibran N, Klein M, O'Keefe G. Proc Natl Acad Sci U S A. 2010; 107 (22): 9923-8
• DMSO and betaine greatly improve amplification of GC-rich constructs in de novo synthesis. Jensen MA, Fukushima M, Davis RW. PLoS One. 2010; 5 (6): e11024
• Gas-phase cleavage and dephosphorylation of universal linker-bound oligodeoxynucleotides. Jensen MA, Anderson KM, Davis RW. Nucleosides Nucleotides Nucleic Acids. 2010; 29 (11): 867-78
• Gene annotation and drug target discovery in Candida albicans with a tagged transposon mutant collection. Oh J, Fung E, Schlecht U, Davis RW, Giaever G, St Onge RP, Deutschbauer A, Nislow C. PLoS Pathog. 2010; 6 (10): e1001140
• High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets. Wang C, Sanders CM, Yang Q, Schroeder HW, Wang E, Babrzadeh F, Gharizadeh B, Myers RM, Hudson JR, Davis RW, Han J. Proc Natl Acad Sci U S A. 2010; 107 (4): 1518-23
• Knowledge-based analysis of microarrays for the discovery of transcriptional regulation relationships. Seok J, Kaushal A, Davis RW, Xiao W. BMC Bioinformatics. 2010: 11 Suppl 1 S8
• Multiplex identification of microbes. Hyman RW, St Onge RP, Allen EA, Miranda M, Aparicio AM, Fukushima M, Davis RW. Appl Environ Microbiol. 2010; 76 (12): 3904-10
• Plasma proteome response to severe burn injury revealed by 18O-labeled "universal" reference-based quantitative proteomics. Qian WJ, Petritis BO, Kaushal A, Finnerty CC, Jeschke MG, Monroe ME, Moore RJ, Schepmoes AA, Xiao W, Moldawer LL, Davis RW, Tompkins RG, Herndon DN, Camp DG, Smith RD. J Proteome Res. 2010; 9 (9): 4779-89
• Predicting patient survival from longitudinal gene expression. Zhang Y, Tibshirani RJ, Davis RW. Stat Appl Genet Mol Biol. 2010: 9 Article41
• Sensitive giant magnetoresistive-based immunoassay for multiplex mycotoxin detection. Mak AC, Osterfeld SJ, Yu H, Wang SX, Davis RW, Jejelowo OA, Pourmand N. Biosens Bioelectron. 2010; 25 (7): 1635-9
• Systematic analysis of genome-wide fitness data in yeast reveals novel gene function and drug action. Hillenmeyer ME, Ericson E, Davis RW, Nislow C, Koller D, Giaever G. Genome Biol. 2010; 11 (3): R30
• A Microfluidic Platform for Characterization of Protein-Protein Interactions. Javanmard M, Talasaz AH, Nemat-Gorgani M, Huber DE, Pease F, Ronaghi M, Davis RW. IEEE Sens J. 2009; 9 (8): 883-891
• A dynamic network of transcription in LPS-treated human subjects. Seok J, Xiao W, Moldawer LL, Davis RW, Covert MW. BMC Syst Biol. 2009: 3 78
• A genome-wide screen for regulators of TORC1 in response to amino acid starvation reveals a conserved Npr2/3 complex. Neklesa TK, Davis RW. PLoS Genet. 2009; 5 (6): e1000515
• Alternative splicing of PTC7 in Saccharomyces cerevisiae determines protein localization. Juneau K, Nislow C, Davis RW. Genetics. 2009; 183 (1): 185-94
• Electrical Detection of Proteins and DNA using Bioactivated Microfluidic Channels: Theoretical and Experimental Considerations. Javanmard M, Esfandyarpour H, Pease F, Davis RW. J Vac Sci Technol B Microelectron Nanometer Struct Process Meas Phenom. 2009; 27 (6): 3099-3103
• Electrical detection of protein biomarkers using bioactivated microfluidic channels. Javanmard M, Talasaz AH, Nemat-Gorgani M, Pease F, Ronaghi M, Davis RW. Lab Chip. 2009; 9 (10): 1429-34
• Isolating highly enriched populations of circulating epithelial cells and other rare cells from blood using a magnetic sweeper device. Talasaz AH, Powell AA, Huber DE, Berbee JG, Roh KH, Yu W, Xiao W, Davis MM, Pease RF, Mindrinos MN, Jeffrey SS, Davis RW. Proc Natl Acad Sci U S A. 2009; 106 (10): 3970-5
• Large-scale multiplexed quantitative discovery proteomics enabled by the use of an (18)O-labeled "universal" reference sample. Qian WJ, Liu T, Petyuk VA, Gritsenko MA, Petritis BO, Polpitiya AD, Kaushal A, Xiao W, Finnerty CC, Jeschke MG, Jaitly N, Monroe ME, Moore RJ, Moldawer LL, Davis RW, Tompkins RG, Herndon DN, Camp DG, Smith RD. J Proteome Res. 2009; 8 (1): 290-9
• Mapping gene associations in human mitochondria using clinical disease phenotypes. Scharfe C, Lu HH, Neuenburg JK, Allen EA, Li GC, Klopstock T, Cowan TM, Enns GM, Davis RW. PLoS Comput Biol. 2009; 5 (4): e1000374
• Meiotic recombination generates rich diversity in NK cell receptor genes, alleles, and haplotypes. Norman PJ, Abi-Rached L, Gendzekhadze K, Hammond JA, Moesta AK, Sharma D, Graef T, McQueen KL, Guethlein LA, Carrington CV, Chandanayingyong D, Chang YH, Crespí C, Saruhan-Direskeneli G, Hameed K, Kamkamidze G, Koram KA, Layrisse Z, Matamoros N, Milà J, Park MH, Pitchappan RM, Ramdath DD, Shiau MY, Stephens HA, Struik S, Tyan D, Verity DH, Vaughan RW, Davis RW, Fraser PA, Riley EM, Ronaghi M, Parham P. Genome Res. 2009; 19 (5): 757-69
• Sequential use of transcriptional profiling, expression quantitative trait mapping, and gene association implicates MMP20 in human kidney aging. Wheeler HE, Metter EJ, Tanaka T, Absher D, Higgins J, Zahn JM, Wilhelmy J, Davis RW, Singleton A, Myers RM, Ferrucci L, Kim SK. PLoS Genet. 2009; 5 (10): e1000685
• Whole genome survey of coding SNPs reveals a reproducible pathway determinant of Parkinson disease. Srinivasan BS, Doostzadeh J, Absalan F, Mohandessi S, Jalili R, Bigdeli S, Wang J, Mahadevan J, Lee CL, Davis RW, William Langston J, Ronaghi M. Hum Mutat. 2009; 30 (2): 228-38
• A System for Multiplexed Direct Electrical Detection of DNA Synthesis. Anderson EP, Daniels JS, Yu H, Karhanek M, Lee TH, Davis RW, Pourmand N. Sens Actuators B Chem. 2008; 129 (1): 79-86
• A comprehensive assay for targeted multiplex amplification of human DNA sequences. Krishnakumar S, Zheng J, Wilhelmy J, Faham M, Mindrinos M, Davis R. Proc Natl Acad Sci U S A. 2008; 105 (27): 9296-301
• An integrated platform of genomic assays reveals small-molecule bioactivities. Hoon S, Smith AM, Wallace IM, Suresh S, Miranda M, Fung E, Proctor M, Shokat KM, Zhang C, Davis RW, Giaever G, St Onge RP, StOnge RP, Nislow C. Nat Chem Biol. 2008; 4 (8): 498-506
• Conformational flexibility of a model protein upon immobilization on self-assembled monolayers. Bigdeli S, Talasaz AH, Ståhl P, Persson HH, Ronaghi M, Davis RW, Nemat-Gorgani M. Biotechnol Bioeng. 2008; 100 (1): 19-27
• High-resolution, in vivo magnetic resonance imaging of Drosophila at 18.8 Tesla. Null B, Liu CW, Hedehus M, Conolly S, Davis RW. PLoS One. 2008; 3 (7): e2817
• High-throughput creation of a whole-genome collection of yeast knockout strains. Chu AM, Davis RW. Methods Mol Biol. 2008: 416 205-20
• Interference of globin genes with biomarker discovery for allograft rejection in peripheral blood samples. Li L, Ying L, Naesens M, Xiao W, Sigdel T, Hsieh S, Martin J, Chen R, Liu K, Mindrinos M, Davis R, Sarwal M. Physiol Genomics. 2008; 32 (2): 190-7
• Multiplex protein assays based on real-time magnetic nanotag sensing. Osterfeld SJ, Yu H, Gaster RS, Caramuta S, Xu L, Han SJ, Hall DA, Wilson RJ, Sun S, White RL, Davis RW, Pourmand N, Wang SX. Proc Natl Acad Sci U S A. 2008; 105 (52): 20637-40
• Multiplexed proximity ligation assays to profile putative plasma biomarkers relevant to pancreatic and ovarian cancer. Fredriksson S, Horecka J, Brustugun OT, Schlingemann J, Koong AC, Tibshirani R, Davis RW. Clin Chem. 2008; 54 (3): 582-9
• Pervasive and persistent redundancy among duplicated genes in yeast. Dean EJ, Davis JC, Davis RW, Petrov DA. PLoS Genet. 2008; 4 (7): e1000113
• Superoxide anions regulate TORC1 and its ability to bind Fpr1:rapamycin complex. Neklesa TK, Davis RW. Proc Natl Acad Sci U S A. 2008; 105 (39): 15166-71
• The chemical genomic portrait of yeast: uncovering a phenotype for all genes. Hillenmeyer ME, Fung E, Wildenhain J, Pierce SE, Hoon S, Lee W, Proctor M, St Onge RP, Tyers M, Koller D, Altman RB, Davis RW, Nislow C, Giaever G. Science. 2008; 320 (5874): 362-5
• A high-resolution atlas of nucleosome occupancy in yeast. Lee W, Tillo D, Bray N, Morse RH, Davis RW, Hughes TR, Nislow C. Nat Genet. 2007; 39 (10): 1235-44
• A novel catechol-based universal support for oligonucleotide synthesis. Anderson KM, Jaquinod L, Jensen MA, Ngo N, Davis RW. J Org Chem. 2007; 72 (26): 9875-80
• Accelerating the discovery of biologically active small molecules using a high-throughput yeast halo assay. Gassner NC, Tamble CM, Bock JE, Cotton N, White KN, Tenney K, St Onge RP, Proctor MJ, Giaever G, Nislow C, Davis RW, Crews P, Holman TR, Lokey RS. J Nat Prod. 2007; 70 (3): 383-90
• Branch migration displacement assay with automated heuristic analysis for discrete DNA length measurement using DNA microarrays. Pourmand N, Caramuta S, Villablanca A, Mori S, Karhanek M, Wang SX, Davis RW. Proc Natl Acad Sci U S A. 2007; 104 (15): 6146-51
• Connector inversion probe technology: a powerful one-primer multiplex DNA amplification system for numerous scientific applications. Akhras MS, Unemo M, Thiyagarajan S, Nyrén P, Davis RW, Fire AZ, Pourmand N. PLoS One. 2007; 2 (9): e915
• Diverse cellular functions of the Hsp90 molecular chaperone uncovered using systems approaches. McClellan AJ, Xia Y, Deutschbauer AM, Davis RW, Gerstein M, Frydman J. Cell. 2007; 131 (1): 121-35
• Genome-wide analysis of barcoded Saccharomyces cerevisiae gene-deletion mutants in pooled cultures. Pierce SE, Davis RW, Nislow C, Giaever G. Nat Protoc. 2007; 2 (11): 2958-74
• High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing. Juneau K, Palm C, Miranda M, Davis RW. Proc Natl Acad Sci U S A. 2007; 104 (5): 1522-7
• Multigene amplification and massively parallel sequencing for cancer mutation discovery. Dahl F, Stenberg J, Fredriksson S, Welch K, Zhang M, Nilsson M, Bicknell D, Bodmer WF, Davis RW, Ji H. Proc Natl Acad Sci U S A. 2007; 104 (22): 9387-92
• Multiplex amplification of all coding sequences within 10 cancer genes by Gene-Collector. Fredriksson S, Banér J, Dahl F, Chu A, Ji H, Welch K, Davis RW. Nucleic Acids Res. 2007; 35 (7): e47
• Multiplexed protein detection by proximity ligation for cancer biomarker validation. Fredriksson S, Dixon W, Ji H, Koong AC, Mindrinos M, Davis RW. Nat Methods. 2007; 4 (4): 327-9
• PathogenMip assay: a multiplex pathogen detection assay. Akhras MS, Thiyagarajan S, Villablanca AC, Davis RW, Nyrén P, Pourmand N. PLoS One. 2007; 2 (2): e223
• Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions. St Onge RP, Mani R, Oh J, Proctor M, Fung E, Davis RW, Nislow C, Roth FP, Giaever G. Nat Genet. 2007; 39 (2): 199-206
• Targeted cell detection based on microchannel gating. Javanmard M, Talasaz AH, Nemat-Gorgani M, Pease F, Ronaghi M, Davis RW. Biomicrofluidics. 2007; 1 (4): 44103
• Unusual selection on the KIR3DL1/S1 natural killer cell receptor in Africans. Norman PJ, Abi-Rached L, Gendzekhadze K, Korbel D, Gleimer M, Rowley D, Bruno D, Carrington CV, Chandanayingyong D, Chang YH, Crespí C, Saruhan-Direskeneli G, Fraser PA, Hameed K, Kamkamidze G, Koram KA, Layrisse Z, Matamoros N, Milà J, Park MH, Pitchappan RM, Ramdath DD, Shiau MY, Stephens HA, Struik S, Verity DH, Vaughan RW, Tyan D, Davis RW, Riley EM, Ronaghi M, Parham P. Nat Genet. 2007; 39 (9): 1092-9
• A haplotype framework for cystic fibrosis mutations in Iran. Elahi E, Khodadad A, Kupershmidt I, Ghasemi F, Alinasab B, Naghizadeh R, Eason RG, Amini M, Esmaili M, Esmaeili Dooki MR, Sanati MH, Davis RW, Ronaghi M, Thorstenson YR. J Mol Diagn. 2006; 8 (1): 119-27
• A high-resolution map of transcription in the yeast genome. David L, Huber W, Granovskaia M, Toedling J, Palm CJ, Bofkin L, Jones T, Davis RW, Steinmetz LM. Proc Natl Acad Sci U S A. 2006; 103 (14): 5320-5
• A unique and universal molecular barcode array. Pierce SE, Fung EL, Jaramillo DF, Chu AM, Davis RW, Nislow C, Giaever G. Nat Methods. 2006; 3 (8): 601-3
• Analysis of hybridization on the molecular barcode GeneChip microarray. Walton SP, Mindrinos MN, Davis RW. Biochem Biophys Res Commun. 2006; 348 (2): 689-96
• Cell trapping in activated micropores for functional analysis. Talasaz AH, Powell AA, Stahl P, Ronaghi M, Jeffrey SS, Mindrinos M, Davis RW. Conf Proc IEEE Eng Med Biol Soc. 2006: 1 1838-41
• Current rectification with poly-l-lysine-coated quartz nanopipettes. Umehara S, Pourmand N, Webb CD, Davis RW, Yasuda K, Karhanek M. Nano Lett. 2006; 6 (11): 2486-92
• Data quality in genomics and microarrays. Ji H, Davis RW. Nat Biotechnol. 2006; 24 (9): 1112-3
• Direct electrical detection of DNA synthesis. Pourmand N, Karhanek M, Persson HH, Webb CD, Lee TH, Zahradníková A, Davis RW. Proc Natl Acad Sci U S A. 2006; 103 (17): 6466-70
• Introns regulate RNA and protein abundance in yeast. Juneau K, Miranda M, Hillenmeyer ME, Nislow C, Davis RW. Genetics. 2006; 174 (1): 511-8
• Modeling of the bioactivated nanopore devices. Talasaz AH, Liu Y, Ronaghi M, Davis RW. Conf Proc IEEE Eng Med Biol Soc. 2006: 1 1830-3
• Molecular inversion probe analysis of gene copy alterations reveals distinct categories of colorectal carcinoma. Ji H, Kumm J, Zhang M, Farnam K, Salari K, Faham M, Ford JM, Davis RW. Cancer Res. 2006; 66 (16): 7910-9
• PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens. Thiyagarajan S, Karhanek M, Akhras M, Davis RW, Pourmand N. BMC Bioinformatics. 2006: 7 500
• Prediction of protein orientation upon immobilization on biological and nonbiological surfaces. Talasaz AH, Nemat-Gorgani M, Liu Y, Ståhl P, Dutton RW, Ronaghi M, Davis RW. Proc Natl Acad Sci U S A. 2006; 103 (40): 14773-8
• Rapid and highly informative diagnostic assay for H5N1 influenza viruses. Pourmand N, Diamond L, Garten R, Erickson JP, Kumm J, Donis RO, Davis RW. PLoS One. 2006: 1 e95
• Transcriptional profiling of aging in human muscle reveals a common aging signature. Zahn JM, Sonu R, Vogel H, Crane E, Mazan-Mamczarz K, Rabkin R, Davis RW, Becker KG, Owen AB, Kim SK. PLoS Genet. 2006; 2 (7): e115
• A novel method for STR-based DNA profiling using microarrays. Kemp JT, Davis RW, White RL, Wang SX, Webb CD. J Forensic Sci. 2005; 50 (5): 1109-13
• Bioluminescence regenerative cycle (BRC) system: theoretical considerations for nucleic acid quantification assays. Hassibi A, Contag C, Vlad MO, Hafezi M, Lee TH, Davis RW, Pourmand N. Biophys Chem. 2005; 116 (3): 175-85
• Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae. Gu Z, David L, Petrov D, Jones T, Davis RW, Steinmetz LM. Proc Natl Acad Sci U S A. 2005; 102 (4): 1092-7
• Genome-wide requirements for resistance to functionally distinct DNA-damaging agents. Lee W, St Onge RP, Proctor M, Flaherty P, Jordan MI, Arkin AP, Davis RW, Nislow C, Giaever G. PLoS Genet. 2005; 1 (2): e24
• Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast. Deutschbauer AM, Jaramillo DF, Proctor M, Kumm J, Hillenmeyer ME, Davis RW, Nislow C, Giaever G. Genetics. 2005; 169 (4): 1915-25
• Microbes on the human vaginal epithelium. Hyman RW, Fukushima M, Diamond L, Kumm J, Giudice LC, Davis RW. Proc Natl Acad Sci U S A. 2005; 102 (22): 7952-7
• Multiplexed variation scanning for 1,000 amplicons in hundreds of patients using mismatch repair detection (MRD) on tag arrays. Faham M, Zheng J, Moorhead M, Fakhrai-Rad H, Namsaraev E, Wong K, Wang Z, Chow SG, Lee L, Suyenaga K, Reichert J, Boudreau A, Eberle J, Bruckner C, Jain M, Karlin-Neumann G, Jones HB, Willis TD, Buxbaum JD, Davis RW. Proc Natl Acad Sci U S A. 2005; 102 (41): 14717-22
• Quantitative proteome analysis of human plasma following in vivo lipopolysaccharide administration using 16O/18O labeling and the accurate mass and time tag approach. Qian WJ, Monroe ME, Liu T, Jacobs JM, Anderson GA, Shen Y, Moore RJ, Anderson DJ, Zhang R, Calvano SE, Lowry SF, Xiao W, Moldawer LL, Davis RW, Tompkins RG, Camp DG, Smith RD. Mol Cell Proteomics. 2005; 4 (5): 700-9
• Quantitative trait loci mapped to single-nucleotide resolution in yeast. Deutschbauer AM, Davis RW. Nat Genet. 2005; 37 (12): 1333-40
• Single DNA molecule detection using nanopipettes and nanoparticles. Karhanek M, Kemp JT, Pourmand N, Davis RW, Webb CD. Nano Lett. 2005; 5 (2): 403-7
• A genome-wide study of gene activity reveals developmental signaling pathways in the preimplantation mouse embryo. Wang QT, Piotrowska K, Ciemerych MA, Milenkovic L, Scott MP, Davis RW, Zernicka-Goetz M. Dev Cell. 2004; 6 (1): 133-44
• A multi-enzyme model for Pyrosequencing. Agah A, Aghajan M, Mashayekhi F, Amini S, Davis RW, Plummer JD, Ronaghi M, Griffin PB. Nucleic Acids Res. 2004; 32 (21): e166
• A transcriptional profile of aging in the human kidney. Rodwell GE, Sonu R, Zahn JM, Lund J, Wilhelmy J, Wang L, Xiao W, Mindrinos M, Crane E, Segal E, Myers BD, Brooks JD, Davis RW, Higgins J, Owen AB, Kim SK. PLoS Biol. 2004; 2 (12): e427
• Characterization of synthetic DNA bar codes in Saccharomyces cerevisiae gene-deletion strains. Eason RG, Pourmand N, Tongprasit W, Herman ZS, Anthony K, Jejelowo O, Davis RW, Stolc V. Proc Natl Acad Sci U S A. 2004; 101 (30): 11046-51
• Chemogenomic profiling: identifying the functional interactions of small molecules in yeast. Giaever G, Flaherty P, Kumm J, Proctor M, Nislow C, Jaramillo DF, Chu AM, Jordan MI, Arkin AP, Davis RW. Proc Natl Acad Sci U S A. 2004; 101 (3): 793-8
• The diploid genome sequence of Candida albicans. Jones T, Federspiel NA, Chibana H, Dungan J, Kalman S, Magee BB, Newport G, Thorstenson YR, Agabian N, Magee PT, Davis RW, Scherer S. Proc Natl Acad Sci U S A. 2004; 101 (19): 7329-34
• Contributions of ATM mutations to familial breast and ovarian cancer. Thorstenson YR, Roxas A, Kroiss R, Jenkins MA, Yu KM, Bachrich T, Muhr D, Wayne TL, Chu G, Davis RW, Wagner TM, Oefner PJ. Cancer Res. 2003; 63 (12): 3325-33
• Determination of hepatitis C virus genotype by Pyrosequencing. Elahi E, Pourmand N, Chaung R, Rofoogaran A, Boisver J, Samimi-Rad K, Davis RW, Ronaghi M. J Virol Methods. 2003; 109 (2): 171-6
• Genotyping African haplotypes in ATM using a co-spotted single-base extension assay. Jain M, Thorstenson YR, Faulkner DM, Pourmand N, Jones T, Au M, Oefner PJ, White KP, Davis RW. Hum Mutat. 2003; 22 (3): 214-21
• Multiplexed genotyping with sequence-tagged molecular inversion probes. Hardenbol P, Banér J, Jain M, Nilsson M, Namsaraev EA, Karlin-Neumann GA, Fakhrai-Rad H, Ronaghi M, Willis TD, Landegren U, Davis RW. Nat Biotechnol. 2003; 21 (6): 673-8
• Dissecting the architecture of a quantitative trait locus in yeast. Steinmetz LM, Sinha H, Richards DR, Spiegelman JI, Oefner PJ, McCusker JH, Davis RW. Nature. 2002; 416 (6878): 326-30
• Functional profiling of the Saccharomyces cerevisiae genome. Giaever G, Chu AM, Ni L, Connelly C, Riles L, Véronneau S, Dow S, Lucau-Danila A, Anderson K, André B, Arkin AP, Astromoff A, El-Bakkoury M, Bangham R, Benito R, Brachat S, Campanaro S, Curtiss M, Davis K, Deutschbauer A, Entian KD, Flaherty P, Foury F, Garfinkel DJ, Gerstein M, Gotte D, Güldener U, Hegemann JH, Hempel S, Herman Z, Jaramillo DF, Kelly DE, Kelly SL, Kötter P, LaBonte D, Lamb DC, Lan N, Liang H, Liao H, Liu L, Luo C, Lussier M, Mao R, Menard P, Ooi SL, Revuelta JL, Roberts CJ, Rose M, Ross-Macdonald P, Scherens B, Schimmack G, Shafer B, Shoemaker DD, Sookhai-Mahadeo S, Storms RK, Strathern JN, Valle G, Voet M, Volckaert G, Wang CY, Ward TR, Wilhelmy J, Winzeler EA, Yang Y, Yen G, Youngman E, Yu K, Bussey H, Boeke JD, Snyder M, Philippsen P, Davis RW, Johnston M. Nature. 2002; 418 (6896): 387-91
• Gene expression during the life cycle of Drosophila melanogaster. Arbeitman MN, Furlong EE, Imam F, Johnson E, Null BH, Baker BS, Krasnow MA, Scott MP, Davis RW, White KP. Science. 2002; 297 (5590): 2270-5
• Identification and preliminary characterization of mouse Adam33. Gunn TM, Azarani A, Kim PH, Hyman RW, Davis RW, Barsh GS. BMC Genet. 2002: 3 2
• Multiplex Pyrosequencing. Pourmand N, Elahi E, Davis RW, Ronaghi M. Nucleic Acids Res. 2002; 30 (7): e31
• Parallel phenotypic analysis of sporulation and postgermination growth in Saccharomyces cerevisiae. Deutschbauer AM, Williams RM, Chu AM, Davis RW. Proc Natl Acad Sci U S A. 2002; 99 (24): 15530-5
• Sequence of Plasmodium falciparum chromosome 12. Hyman RW, Fung E, Conway A, Kurdi O, Mao J, Miranda M, Nakao B, Rowley D, Tamaki T, Wang F, Davis RW. Nature. 2002; 419 (6906): 534-7
• Systematic screen for human disease genes in yeast. Steinmetz LM, Scharfe C, Deutschbauer AM, Mokranjac D, Herman ZS, Jones T, Chu AM, Giaever G, Prokisch H, Oefner PJ, Davis RW. Nat Genet. 2002; 31 (4): 400-4
• Transcriptional response of Saccharomyces cerevisiae to DNA-damaging agents does not identify the genes that protect against these agents. Birrell GW, Brown JA, Wu HI, Giaever G, Chu AM, Davis RW, Brown JM. Proc Natl Acad Sci U S A. 2002; 99 (13): 8778-83
• Yeast tRNA as carrier in the isolation of microscale RNA for global amplification and expression profiling. Wang QT, Xiao W, Mindrinos M, Davis RW. Biotechniques. 2002; 33 (4): 788, 790, 792 passim
• A genome-wide screen in Saccharomyces cerevisiae for genes affecting UV radiation sensitivity. Birrell GW, Giaever G, Chu AM, Davis RW, Brown JM. Proc Natl Acad Sci U S A. 2001; 98 (22): 12608-13
• Global analysis of ATM polymorphism reveals significant functional constraint. Thorstenson YR, Shen P, Tusher VG, Wayne TL, Davis RW, Chu G, Oefner PJ. Am J Hum Genet. 2001; 69 (2): 396-412
• Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid. Barnett MJ, Fisher RF, Jones T, Komp C, Abola AP, Barloy-Hubler F, Bowser L, Capela D, Galibert F, Gouzy J, Gurjal M, Hong A, Huizar L, Hyman RW, Kahn D, Kahn ML, Kalman S, Keating DH, Palm C, Peck MC, Surzycki R, Wells DH, Yeh KC, Davis RW, Federspiel NA, Long SR. Proc Natl Acad Sci U S A. 2001; 98 (17): 9883-8
• Transcriptional regulation and function during the human cell cycle. Cho RJ, Huang M, Campbell MJ, Dong H, Steinmetz L, Sapinoso L, Hampton G, Elledge SJ, Davis RW, Lockhart DJ. Nat Genet. 2001; 27 (1): 48-54
• DAtA: database of Arabidopsis thaliana annotation. Palm CJ, Federspiel NA, Davis RW. Nucleic Acids Res. 2000; 28 (1): 102-3
• Functional analysis of the yeast genome by precise deletion and parallel phenotypic characterization. Winzeler EA, Liang H, Shoemaker DD, Davis RW. Novartis Found Symp. 2000: 229 105-9; discussion 109-11
• High-density arrays and insights into genome function. Steinmetz LM, Davis RW. Biotechnol Genet Eng Rev. 2000: 17 109-46
• Population genetic implications from sequence variation in four Y chromosome genes. Shen P, Wang F, Underhill PA, Franco C, Yang WH, Roxas A, Sung R, Lin AA, Hyman RW, Vollrath D, Davis RW, Cavalli-Sforza LL, Oefner PJ. Proc Natl Acad Sci U S A. 2000; 97 (13): 7354-9
• Prevalence of small inversions in yeast gene order evolution. Seoighe C, Federspiel N, Jones T, Hansen N, Bivolarovic V, Surzycki R, Tamse R, Komp C, Huizar L, Davis RW, Scherer S, Tait E, Shaw DJ, Harris D, Murphy L, Oliver K, Taylor K, Rajandream MA, Barrell BG, Wolfe KH. Proc Natl Acad Sci U S A. 2000; 97 (26): 14433-7
• Y chromosome sequence variation and the history of human populations. Underhill PA, Shen P, Lin AA, Jin L, Passarino G, Yang WH, Kauffman E, Bonné-Tamir B, Bertranpetit J, Francalacci P, Ibrahim M, Jenkins T, Kidd JR, Mehdi SQ, Seielstad MT, Wells RS, Piazza A, Davis RW, Feldman MW, Cavalli-Sforza LL, Oefner PJ. Nat Genet. 2000; 26 (3): 358-61
• An arrayable flow-through microcentrifuge for high-throughput instrumentation. Marziali A, Willis TD, Davis RW. Proc Natl Acad Sci U S A. 1999; 96 (1): 61-6
• An automated sample preparation system for large-scale DNA sequencing. Marziali A, Willis TD, Federspiel NA, Davis RW. Genome Res. 1999; 9 (5): 457-62
• Comparative genomes of Chlamydia pneumoniae and C. trachomatis. Kalman S, Mitchell W, Marathe R, Lammel C, Fan J, Hyman RW, Olinger L, Grimwood J, Davis RW, Stephens RS. Nat Genet. 1999; 21 (4): 385-9
• Distribution of haplotypes from a chromosome 21 region distinguishes multiple prehistoric human migrations. Jin L, Underhill PA, Doctor V, Davis RW, Shen P, Cavalli-Sforza LL, Oefner PJ. Proc Natl Acad Sci U S A. 1999; 96 (7): 3796-800
• Fluorescence-based expression monitoring using microarrays. Winzeler EA, Schena M, Davis RW. Methods Enzymol. 1999: 306 3-18
• Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Winzeler EA, Shoemaker DD, Astromoff A, Liang H, Anderson K, Andre B, Bangham R, Benito R, Boeke JD, Bussey H, Chu AM, Connelly C, Davis K, Dietrich F, Dow SW, El Bakkoury M, Foury F, Friend SH, Gentalen E, Giaever G, Hegemann JH, Jones T, Laub M, Liao H, Liebundguth N, Lockhart DJ, Lucau-Danila A, Lussier M, M'Rabet N, Menard P, Mittmann M, Pai C, Rebischung C, Revuelta JL, Riles L, Roberts CJ, Ross-MacDonald P, Scherens B, Snyder M, Sookhai-Mahadeo S, Storms RK, Véronneau S, Voet M, Volckaert G, Ward TR, Wysocki R, Yen GS, Yu K, Zimmermann K, Philippsen P, Johnston M, Davis RW. Science. 1999; 285 (5429): 901-6
• Genome-wide mapping with biallelic markers in Arabidopsis thaliana. Cho RJ, Mindrinos M, Richards DR, Sapolsky RJ, Anderson M, Drenkard E, Dewdney J, Reuber TL, Stammers M, Federspiel N, Theologis A, Yang WH, Hubbell E, Au M, Chung EY, Lashkari D, Lemieux B, Dean C, Lipshutz RJ, Ausubel FM, Davis RW, Oefner PJ. Nat Genet. 1999; 23 (2): 203-7
• Genomic profiling of drug sensitivities via induced haploinsufficiency. Giaever G, Shoemaker DD, Jones TW, Liang H, Winzeler EA, Astromoff A, Davis RW. Nat Genet. 1999; 21 (3): 278-83
• Imaging of apoptosis (programmed cell death) with 99mTc annexin V. Blankenberg FG, Katsikis PD, Tait JF, Davis RE, Naumovski L, Ohtsuki K, Kopiwoda S, Abrams MJ, Strauss HW. J Nucl Med. 1999; 40 (1): 184-91
• On the in vivo function of the RecA ATPase. Campbell MJ, Davis RW. J Mol Biol. 1999; 286 (2): 437-45
• The mouse mahogany locus encodes a transmembrane form of human attractin. Gunn TM, Miller KA, He L, Hyman RW, Davis RW, Azarani A, Schlossman SF, Duke-Cohan JS, Barsh GS. Nature. 1999; 398 (6723): 152-6
• Toxic mutations in the recA gene of E. coli prevent proper chromosome segregation. Campbell MJ, Davis RW. J Mol Biol. 1999; 286 (2): 417-35
• Whole genome genetic-typing in yeast using high-density oligonucleotide arrays. Winzeler EA, Lee B, McCusker JH, Davis RW. Parasitology. 1999: 118 Suppl S73-80
• A genome-wide transcriptional analysis of the mitotic cell cycle. Cho RJ, Campbell MJ, Winzeler EA, Steinmetz L, Conway A, Wodicka L, Wolfsberg TG, Gabrielian AE, Landsman D, Lockhart DJ, Davis RW. Mol Cell. 1998; 2 (1): 65-73
• An automated hydrodynamic process for controlled, unbiased DNA shearing. Thorstenson YR, Hunicke-Smith SP, Oefner PJ, Davis RW. Genome Res. 1998; 8 (8): 848-55
• Direct allelic variation scanning of the yeast genome. Winzeler EA, Richards DR, Conway AR, Goldstein AL, Kalman S, McCullough MJ, McCusker JH, Stevens DA, Wodicka L, Lockhart DJ, Davis RW. Science. 1998; 281 (5380): 1194-7
• Microarrays: biotechnology's discovery platform for functional genomics. Schena M, Heller RA, Theriault TP, Konrad K, Lachenmeier E, Davis RW. Trends Biotechnol. 1998; 16 (7): 301-6
• Parallel analysis of genetic selections using whole genome oligonucleotide arrays. Cho RJ, Fromont-Racine M, Wodicka L, Feierbach B, Stearns T, Legrain P, Lockhart DJ, Davis RW. Proc Natl Acad Sci U S A. 1998; 95 (7): 3752-7
• Application of DNA typing methods and genetic analysis to epidemiology and taxonomy of Saccharomyces isolates. Clemons KV, Park P, McCusker JH, McCullough MJ, Davis RW, Stevens DA. J Clin Microbiol. 1997; 35 (7): 1822-8
• Detection of numerous Y chromosome biallelic polymorphisms by denaturing high-performance liquid chromatography. Underhill PA, Jin L, Lin AA, Mehdi SQ, Jenkins T, Vollrath D, Davis RW, Cavalli-Sforza LL, Oefner PJ. Genome Res. 1997; 7 (10): 996-1005
• Discovery and analysis of inflammatory disease-related genes using cDNA microarrays. Heller RA, Schena M, Chai A, Shalon D, Bedilion T, Gilmore J, Woolley DE, Davis RW. Proc Natl Acad Sci U S A. 1997; 94 (6): 2150-5
• Functional analysis of the yeast genome. Winzeler EA, Davis RW. Curr Opin Genet Dev. 1997; 7 (6): 771-6
• The nucleotide sequence of Saccharomyces cerevisiae chromosome V. Dietrich FS, Mulligan J, Hennessy K, Yelton MA, Allen E, Araujo R, Aviles E, Berno A, Brennan T, Carpenter J, Chen E, Cherry JM, Chung E, Duncan M, Guzman E, Hartzell G, Hunicke-Smith S, Hyman RW, Kayser A, Komp C, Lashkari D, Lew H, Lin D, Mosedale D, Davis RW. Nature. 1997; 387 (6632 Suppl): 78-81
• Whole genome analysis: experimental access to all genome sequenced segments through larger-scale efficient oligonucleotide synthesis and PCR. Lashkari DA, McCusker JH, Davis RW. Proc Natl Acad Sci U S A. 1997; 94 (17): 8945-7
• Yeast microarrays for genome wide parallel genetic and gene expression analysis. Lashkari DA, DeRisi JL, McCusker JH, Namath AF, Gentile C, Hwang SY, Brown PO, Davis RW. Proc Natl Acad Sci U S A. 1997; 94 (24): 13057-62
• CDP1, a novel Saccharomyces cerevisiae gene required for proper nuclear division and chromosome segregation. Foreman PK, Davis RW. Genetics. 1996; 144 (4): 1387-97
• Efficient random subcloning of DNA sheared in a recirculating point-sink flow system. Oefner PJ, Hunicke-Smith SP, Chiang L, Dietrich F, Mulligan J, Davis RW. Nucleic Acids Res. 1996; 24 (20): 3879-86
• Parallel human genome analysis: microarray-based expression monitoring of 1000 genes. Schena M, Shalon D, Heller R, Chai A, Brown PO, Davis RW. Proc Natl Acad Sci U S A. 1996; 93 (20): 10614-9
• Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy. Shoemaker DD, Lashkari DA, Morris D, Mittmann M, Davis RW. Nat Genet. 1996; 14 (4): 450-6
• An automated multiplex oligonucleotide synthesizer: development of high-throughput, low-cost DNA synthesis. Lashkari DA, Hunicke-Smith SP, Norgren RM, Davis RW, Brennan T. Proc Natl Acad Sci U S A. 1995; 92 (17): 7912-5
• Pathogenicity of Saccharomyces cerevisiae in complement factor five-deficient mice. Byron JK, Clemons KV, McCusker JH, Davis RW, Stevens DA. Infect Immun. 1995; 63 (2): 478-85
• Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Schena M, Shalon D, Davis RW, Brown PO. Science. 1995; 270 (5235): 467-70
• Sliding-plate gel caster. Lashkari DA, Norgren RM, Davis RW. Biotechniques. 1995; 18 (4): 625-6
• Cloning vectors for the synthesis of epitope-tagged, truncated and chimeric proteins in Saccharomyces cerevisiae. Foreman PK, Davis RW. Gene. 1994; 144 (1): 63-8
• Epidermal cell fate determination in Arabidopsis: patterns defined by a steroid-inducible regulator. Lloyd AM, Schena M, Walbot V, Davis RW. Science. 1994; 266 (5184): 436-9
• Functional expression of the yeast FLP/FRT site-specific recombination system in Nicotiana tabacum. Lloyd AM, Davis RW. Mol Gen Genet. 1994; 242 (6): 653-7
• Genetic characterization of pathogenic Saccharomyces cerevisiae isolates. McCusker JH, Clemons KV, Stevens DA, Davis RW. Genetics. 1994; 136 (4): 1261-9
• Saccharomyces cerevisiae virulence phenotype as determined with CD-1 mice is associated with the ability to grow at 42 degrees C and form pseudohyphae. McCusker JH, Clemons KV, Stevens DA, Davis RW. Infect Immun. 1994; 62 (12): 5447-55
• Structure of homeobox-leucine zipper genes suggests a model for the evolution of gene families. Schena M, Davis RW. Proc Natl Acad Sci U S A. 1994; 91 (18): 8393-7
• Tetrad analysis possible in Arabidopsis with mutation of the QUARTET (QRT) genes. Preuss D, Rhee SY, Davis RW. Science. 1994; 264 (5164): 1458-60
• A conditional sterile mutation eliminates surface components from Arabidopsis pollen and disrupts cell signaling during fertilization. Preuss D, Lemieux B, Yen G, Davis RW. Genes Dev. 1993; 7 (6): 974-85
• A dominant truncation allele identifies a gene, STE20, that encodes a putative protein kinase necessary for mating in Saccharomyces cerevisiae. Ramer SW, Davis RW. Proc Natl Acad Sci U S A. 1993; 90 (2): 452-6
• Point mutations that separate the role of Saccharomyces cerevisiae centromere binding factor 1 in chromosome segregation from its role in transcriptional activation. Foreman PK, Davis RW. Genetics. 1993; 135 (2): 287-96
• The HAT4 gene of Arabidopsis encodes a developmental regulator. Schena M, Lloyd AM, Davis RW. Genes Dev. 1993; 7 (3): 367-79
• ATP hydrolysis and the displaced strand are two factors that determine the polarity of RecA-promoted DNA strand exchange. Konforti BB, Davis RW. J Mol Biol. 1992; 227 (1): 38-53
• Arabidopsis and Nicotiana anthocyanin production activated by maize regulators R and C1. Lloyd AM, Walbot V, Davis RW. Science. 1992; 258 (5089): 1773-5
• Dominant genetics using a yeast genomic library under the control of a strong inducible promoter. Ramer SW, Elledge SJ, Davis RW. Proc Natl Acad Sci U S A. 1992; 89 (23): 11589-93
• HD-Zip proteins: members of an Arabidopsis homeodomain protein superfamily. Schena M, Davis RW. Proc Natl Acad Sci U S A. 1992; 89 (9): 3894-8
• The use of proline as a nitrogen source causes hypersensitivity to, and allows more economical use of 5FOA in Saccharomyces cerevisiae. McCusker JH, Davis RW. Yeast. 1991 Aug-Sep; 7 (6): 607-8
• A steroid-inducible gene expression system for plant cells. Schena M, Lloyd AM, Davis RW. Proc Natl Acad Sci U S A. 1991; 88 (23): 10421-5
• DNA substrate requirements for stable joint molecule formation by the RecA and single-stranded DNA-binding proteins of Escherichia coli. Konforti BB, Davis RW. J Biol Chem. 1991; 266 (16): 10112-21
• The Saccharomyces cerevisiae RPB4 gene is tightly linked to the TIF2 gene. Foreman PK, Davis RW, Sachs AB. Nucleic Acids Res. 1991; 19 (10): 2781
• Gene targeting at the human CD4 locus by epitope addition. Jasin M, Elledge SJ, Davis RW, Berg P. Genes Dev. 1990; 4 (2): 157-66
• Rain-, wind-, and touch-induced expression of calmodulin and calmodulin-related genes in Arabidopsis. Braam J, Davis RW. Cell. 1990; 60 (3): 357-64
• The preference for a 3' homologous end is intrinsic to RecA-promoted strand exchange. Konforti BB, Davis RW. J Biol Chem. 1990; 265 (12): 6916-20
• Translation initiation and ribosomal biogenesis: involvement of a putative rRNA helicase and RPL46. Sachs AB, Davis RW. Science. 1990; 247 (4946): 1077-9
• Yeast centromere binding protein CBF1, of the helix-loop-helix protein family, is required for chromosome stability and methionine prototrophy. Cai M, Davis RW. Cell. 1990; 61 (3): 437-46
• Genetic selection for genes encoding sequence-specific DNA-binding proteins. Elledge SJ, Sugiono P, Guarente L, Davis RW. Proc Natl Acad Sci U S A. 1989; 86 (10): 3689-93
• Position and density effects on repression by stationary and mobile DNA-binding proteins. Elledge SJ, Davis RW. Genes Dev. 1989; 3 (2): 185-97
• Purification of a yeast centromere-binding protein that is able to distinguish single base-pair mutations in its recognition site. Cai MJ, Davis RW. Mol Cell Biol. 1989; 9 (6): 2544-50
• Rapid screening of a human genomic library in yeast artificial chromosomes for single-copy sequences. Traver CN, Klapholz S, Hyman RW, Davis RW. Proc Natl Acad Sci U S A. 1989; 86 (15): 5898-902
• Strategies for genetic modification of parasites. Davis RW, Ann N Y Acad Sci. 1989: 569 104-17
• The poly(A) binding protein is required for poly(A) shortening and 60S ribosomal subunit-dependent translation initiation. Sachs AB, Davis RW. Cell. 1989; 58 (5): 857-67
• A family of versatile centromeric vectors designed for use in the sectoring-shuffle mutagenesis assay in Saccharomyces cerevisiae. Elledge SJ, Davis RW. Gene. 1988; 70 (2): 303-12
• An electrophoretic karyotype of Neurospora crassa. Orbach MJ, Vollrath D, Davis RW, Yanofsky C. Mol Cell Biol. 1988; 8 (4): 1469-73
• Direction of chromosome rearrangements in Saccharomyces cerevisiae by use of his3 recombinational substrates. Fasullo MT, Davis RW. Mol Cell Biol. 1988; 8 (10): 4370-80
• Physical mapping of large DNA by chromosome fragmentation. Vollrath D, Davis RW, Connelly C, Hieter P. Proc Natl Acad Sci U S A. 1988; 85 (16): 6027-31
• Sequence and nitrate regulation of the Arabidopsis thaliana mRNA encoding nitrate reductase, a metalloflavoprotein with three functional domains. Crawford NM, Smith M, Bellissimo D, Davis RW. Proc Natl Acad Sci U S A. 1988; 85 (14): 5006-10
• Tandem array of human visual pigment genes at Xq28. Vollrath D, Nathans J, Davis RW. Science. 1988; 240 (4859): 1669-72
• A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA binding and cell viability. Sachs AB, Davis RW, Kornberg RD. Mol Cell Biol. 1987; 7 (9): 3268-76
• Identification and isolation of the gene encoding the small subunit of ribonucleotide reductase from Saccharomyces cerevisiae: DNA damage-inducible gene required for mitotic viability. Elledge SJ, Davis RW. Mol Cell Biol. 1987; 7 (8): 2783-93
• Plant defense genes are regulated by ethylene. Ecker JR, Davis RW. Proc Natl Acad Sci U S A. 1987; 84 (15): 5202-6
• Resolution of DNA molecules greater than 5 megabases by contour-clamped homogeneous electric fields. Vollrath D, Davis RW. Nucleic Acids Res. 1987; 15 (19): 7865-76
• Inhibition of gene expression in plant cells by expression of antisense RNA. Ecker JR, Davis RW. Proc Natl Acad Sci U S A. 1986; 83 (15): 5372-6
• Nitrate reductase from squash: cDNA cloning and nitrate regulation. Crawford NM, Campbell WH, Davis RW. Proc Natl Acad Sci U S A. 1986; 83 (21): 8073-6