Publications
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Using multiple microenvironments to find similar ligand-binding sites: application to kinase inhibitor binding.
Liu T,
Altman RB.
PLoS Comput Biol.
2011;
7
(12):
e1002326
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Identification of recurring protein structure microenvironments and discovery of novel functional sites around CYS residues.
Wu S,
Liu T, Altman RB.
BMC Struct Biol.
2010:
10
4
-
A novel method for predicting and using distance constraints of high accuracy for refining protein structure prediction.
Liu T,
Horst JA, Samudrala R.
Proteins.
2009;
77
(1):
220-34
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Predicting drug side-effects by chemical systems biology.
Tatonetti NP,
Liu T, Altman RB.
Genome Biol.
2009;
10
(9):
238
-
Prediction of calcium-binding sites by combining loop-modeling with machine learning.
Liu T,
Altman RB.
BMC Struct Biol.
2009:
9
72
-
Improving the accuracy of template-based predictions by mixing and matching between initial models.
Liu T,
Guerquin M, Samudrala R.
BMC Struct Biol.
2008:
8
24
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The effect of experimental resolution on the performance of knowledge-based discriminatory functions for protein structure selection.
Liu T,
Samudrala R.
Protein Eng Des Sel.
2006;
19
(9):
431-7
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Structural insights into the cellular retinaldehyde-binding protein (CRALBP).
Liu T,
Jenwitheesuk E, Teller DC, Samudrala R.
Proteins.
2005;
61
(2):
412-22
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Bioinformatics and variability in drug response: a protein structural perspective.
Lahti JL,
Tang GW, Capriotti E, Liu T, Altman RB.
J R Soc Interface.
2012;
9
(72):
1409-37
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Comparative modeling: the state of the art and protein drug target structure prediction.
Liu T,
Tang GW, Capriotti E.
Comb Chem High Throughput Screen.
2011;
14
(6):
532-47
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Scoring functions for de novo protein structure prediction revisited.
Ngan SC,
Hung LH, Liu T, Samudrala R.
Methods Mol Biol.
2008:
413
243-81
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Scaffold proteins and the regeneration of visual pigments.
Nawrot M,
Liu T, Garwin GG, Crabb JW, Saari JC.
Photochem Photobiol.
2006 Nov-Dec;
82
(6):
1482-8
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CRALBP ligand and protein interactions.
Wu Z,
Bhattacharya SK, Jin Z, Bonilha VL, Liu T, Nawrot M, Teller DC, Saari JC, Crabb JW.
Adv Exp Med Biol.
2006:
572
477-83
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PROTINFO: new algorithms for enhanced protein structure predictions.
Hung LH,
Ngan SC, Liu T, Samudrala R.
Nucleic Acids Res.
2005;
33
(Web Server issue):
W77-80
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Identification of CRALBP ligand interactions by photoaffinity labeling, hydrogen/deuterium exchange, and structural modeling.
Wu Z,
Hasan A, Liu T, Teller DC, Crabb JW.
J Biol Chem.
2004;
279
(26):
27357-64
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