Publications
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Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data.
Valouev A,
Johnson DS, Sundquist A, Medina C, Anton E, Batzoglou S, Myers RM, Sidow A.
Nat Methods.
2008
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A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning.
Valouev A,
Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K, Sidow A, Fire A, Johnson SM.
Genome Res.
2008;
18
(7):
1051-63
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A quantile method for sizing optical maps.
Li H,
Valouev A, Schwartz DC, Waterman MS, Li LM.
J Comput Biol.
2007;
14
(3):
255-66
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An algorithm for assembly of ordered restriction maps from single DNA molecules.
Valouev A,
Schwartz DC, Zhou S, Waterman MS.
Proc Natl Acad Sci U S A.
2006;
103
(43):
15770-5
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Alignment of optical maps.
Valouev A,
Li L, Liu YC, Schwartz DC, Yang Y, Zhang Y, Waterman MS.
J Comput Biol.
2006;
13
(2):
442-62
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Refinement of optical map assemblies.
Valouev A,
Zhang Y, Schwartz DC, Waterman MS.
Bioinformatics.
2006;
22
(10):
1217-24
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