Tomer Kalisky

Professional Education

• BS, Bar-Ilan University Physics and Mathematics (1996)
• Doctor of Philosophy, Bar-Ilan University (2006)

Faculty Advisor

• Stephen Quake

Web Site Links

• Quake lab website

Research Interests

Single cell gene expression, cancer stem cells, biological networks, systems biology

Publications

• Association of reactive oxygen species levels and radioresistance in cancer stem cells. Diehn M,  Cho RW, Lobo NA, Kalisky T, Dorie MJ, Kulp AN, Qian D, Lam JS, Ailles LE, Wong M, Joshua B, Kaplan MJ, Wapnir I, Dirbas FM, Somlo G, Garberoglio C, Paz B, Shen J, Lau SK, Quake SR, Brown JM, Weissman IL, Clarke MF.  Nature.  2009; 458 (7239): 780-3
• An analytically solvable model for rapid evolution of modular structure. Kashtan N,  Mayo AE, Kalisky T, Alon U.  PLoS Comput Biol.  2009; 5 (4): e1000355
• Protein dynamics in individual human cells: experiment and theory. Cohen AA,  Kalisky T, Mayo A, Geva-Zatorsky N, Danon T, Issaeva I, Kopito RB, Perzov N, Milo R, Sigal A, Alon U.  PLoS One.  2009; 4 (4): e4901
• Nonlocal competition and the speciation transition on random networks. Maruvka YE,  Kalisky T, Shnerb NM.  Phys Rev E Stat Nonlin Soft Matter Phys.  2008; 78 (3 Pt 1): 031920
• Cost-benefit theory and optimal design of gene regulation functions. Kalisky T,  Dekel E, Alon U.  Phys Biol.  2007; 4 (4): 229-45
• Width of percolation transition in complex networks. Kalisky T,  Cohen R.  Phys Rev E Stat Nonlin Soft Matter Phys.  2006; 73 (3 Pt 2): 035101
• Scale-free networks emerging from weighted random graphs. Kalisky T,  Sreenivasan S, Braunstein LA, Buldyrev SV, Havlin S, Stanley HE.  Phys Rev E Stat Nonlin Soft Matter Phys.  2006; 73 (2 Pt 2): 025103
• Tomography of scale-free networks and shortest path trees. Kalisky T,  Cohen R, Mokryn O, Dolev D, Shavitt Y, Havlin S.  Phys Rev E Stat Nonlin Soft Matter Phys.  2006; 74 (6 Pt 2): 066108
• Scaling of optimal-path-lengths distribution in complex networks. Kalisky T,  Braunstein LA, Buldyrev SV, Havlin S, Stanley HE.  Phys Rev E Stat Nonlin Soft Matter Phys.  2005; 72 (2 Pt 2): 025102
• Localization transition on complex networks via spectral statistics. Sade M,  Kalisky T, Havlin S, Berkovits R.  Phys Rev E Stat Nonlin Soft Matter Phys.  2005; 72 (6 Pt 2): 066123
• Volatility of linear and nonlinear time series. Kalisky T,  Ashkenazy Y, Havlin S.  Phys Rev E Stat Nonlin Soft Matter Phys.  2005; 72 (1 Pt 1): 011913
• Effect of disorder strength on optimal paths in complex networks. Sreenivasan S,  Kalisky T, Braunstein LA, Buldyrev SV, Havlin S, Stanley HE.  Phys Rev E Stat Nonlin Soft Matter Phys.  2004; 70 (4 Pt 2): 046133
• Symbolic dynamics for strong chaos on stochastic webs: General quasisymmetry. Dana I,  Kalisky T.  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics.  1996; 53 (3): R2025-R2028