Mike Cherry

Publications

• A gene ontology inferred from molecular networks. Dutkowski J, Kramer M, Surma MA, Balakrishnan R, Cherry JM, Krogan NJ, Ideker T. Nat Biotechnol. 2013; 31 (1): 38-45
• InterMOD: integrated data and tools for the unification of model organism research. Sullivan J, Karra K, Moxon SA, Vallejos A, Motenko H, Wong JD, Aleksic J, Balakrishnan R, Binkley G, Harris T, Hitz B, Jayaraman P, Lyne R, Neuhauser S, Pich C, Smith RN, Trinh Q, Cherry JM, Richardson J, Stein L, Twigger S, Westerfield M, Worthey E, Micklem G. Sci Rep. 2013: 3 1802
• The YeastGenome app: the Saccharomyces Genome Database at your fingertips. Wong ED, Karra K, Hitz BC, Hong EL, Cherry JM. Database (Oxford). 2013: 2013 bat004
• The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome Database. Engel SR, Cherry JM. Database (Oxford). 2013: 2013 bat012
• Annotation of functional variation in personal genomes using RegulomeDB. Boyle AP, Hong EL, Hariharan M, Cheng Y, Schaub MA, Kasowski M, Karczewski KJ, Park J, Hitz BC, Weng S, Cherry JM, Snyder M. Genome Res. 2012; 22 (9): 1790-7
• Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report. Chan ET, Cherry JM. Database (Oxford). 2012: 2012 bar057
• CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations. Park J, Costanzo MC, Balakrishnan R, Cherry JM, Hong EL. Database (Oxford). 2012: 2012 bas001
• In the beginning there was babble... Klionsky DJ, Bruford EA, Cherry JM, Hodgkin J, Laulederkind SJ, Singer AG. Autophagy. 2012; 8 (8): 1165-7
• Saccharomyces Genome Database: the genomics resource of budding yeast. Cherry JM, Hong EL, Amundsen C, Balakrishnan R, Binkley G, Chan ET, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Karra K, Krieger CJ, Miyasato SR, Nash RS, Park J, Skrzypek MS, Simison M, Weng S, Wong ED. Nucleic Acids Res. 2012; 40 (Database issue): D700-5
• YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit. Balakrishnan R, Park J, Karra K, Hitz BC, Binkley G, Hong EL, Sullivan J, Micklem G, Cherry JM. Database (Oxford). 2012: 2012 bar062
• Toward an interactive article: integrating journals and biological databases. Rangarajan A, Schedl T, Yook K, Chan J, Haenel S, Otis L, Faelten S, DePellegrin-Connelly T, Isaacson R, Skrzypek MS, Marygold SJ, Stefancsik R, Cherry JM, Sternberg PW, Müller HM. BMC Bioinformatics. 2011: 12 175
• Towards BioDBcore: a community-defined information specification for biological databases. Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Mizrachi IK, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C. Nucleic Acids Res. 2011; 39 (Database issue): D7-10
• Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study. Costanzo MC, Park J, Balakrishnan R, Cherry JM, Hong EL. Database (Oxford). 2011: 2011 bar004
• Saccharomyces Genome Database provides mutant phenotype data. Engel SR, Balakrishnan R, Binkley G, Christie KR, Costanzo MC, Dwight SS, Fisk DG, Hirschman JE, Hitz BC, Hong EL, Krieger CJ, Livstone MS, Miyasato SR, Nash R, Oughtred R, Park J, Skrzypek MS, Weng S, Wong ED, Dolinski K, Botstein D, Cherry JM. Nucleic Acids Res. 2010; 38 (Database issue): D433-6
• Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns. Christie KR, Hong EL, Cherry JM. Trends Microbiol. 2009; 17 (7): 286-94
• New mutant phenotype data curation system in the Saccharomyces Genome Database. Costanzo MC, Skrzypek MS, Nash R, Wong E, Binkley G, Engel SR, Hitz B, Hong EL, Cherry JM. Database (Oxford). 2009: 2009 bap001
• The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species. PLoS Comput Biol. 2009; 5 (7): e1000431
• Gene Ontology annotations at SGD: new data sources and annotation methods. Hong EL, Balakrishnan R, Dong Q, Christie KR, Park J, Binkley G, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Krieger CJ, Livstone MS, Miyasato SR, Nash RS, Oughtred R, Skrzypek MS, Weng S, Wong ED, Zhu KK, Dolinski K, Botstein D, Cherry JM. Nucleic Acids Res. 2008; 36 (Database issue): D577-81
• Expanded protein information at SGD: new pages and proteome browser. Nash R, Weng S, Hitz B, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Livstone MS, Oughtred R, Park J, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Dolinski K, Botstein D, Cherry JM. Nucleic Acids Res. 2007; 35 (Database issue): D468-71
• Mining experimental evidence of molecular function claims from the literature. Crangle CE, Cherry JM, Hong EL, Zbyslaw A. Bioinformatics. 2007; 23 (23): 3232-40
• Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome. Hirschman JE, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hong EL, Livstone MS, Nash R, Park J, Oughtred R, Skrzypek M, Starr B, Theesfeld CL, Williams J, Andrada R, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Thanawala MK, Weng S, Dolinski K, Botstein D, Cherry JM. Nucleic Acids Res. 2006; 34 (Database issue): D442-5
• Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA, Krieger CJ, del Toro C, Ryder HF, Williamson SC, Barbeau RA, Hamilton EP, Orias E. PLoS Biol. 2006; 4 (9): e286
• Saccharomyces cerevisiae S288C genome annotation: a working hypothesis. Fisk DG, Ball CA, Dolinski K, Engel SR, Hong EL, Issel-Tarver L, Schwartz K, Sethuraman A, Botstein D, Cherry JM. Yeast. 2006; 23 (12): 857-65
• Tetrahymena Genome Database (TGD): a new genomic resource for Tetrahymena thermophila research. Stover NA, Krieger CJ, Binkley G, Dong Q, Fisk DG, Nash R, Sethuraman A, Weng S, Cherry JM. Nucleic Acids Res. 2006; 34 (Database issue): D500-3
• Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD). Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Nash R, Oughtred R, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Sethuraman A, Weng S, Botstein D, Cherry JM. Nucleic Acids Res. 2005; 33 (Database issue): D374-7
• Inference of combinatorial regulation in yeast transcriptional networks: a case study of sporulation. Wang W, Cherry JM, Nochomovitz Y, Jolly E, Botstein D, Li H. Proc Natl Acad Sci U S A. 2005; 102 (6): 1998-2003
• PatMatch: a program for finding patterns in peptide and nucleotide sequences. Yan T, Yoo D, Berardini TZ, Mueller LA, Weems DC, Weng S, Cherry JM, Rhee SY. Nucleic Acids Res. 2005; 33 (Web Server issue): W262-6
• GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Boyle EI, Weng S, Gollub J, Jin H, Botstein D, Cherry JM, Sherlock G. Bioinformatics. 2004; 20 (18): 3710-5
• Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Christie KR, Weng S, Balakrishnan R, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Feierbach B, Fisk DG, Hirschman JE, Hong EL, Issel-Tarver L, Nash R, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Botstein D, Cherry JM. Nucleic Acids Res. 2004; 32 (Database issue): D311-4
• Saccharomyces genome database: underlying principles and organisation. Dwight SS, Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Engel SR, Feierbach B, Fisk DG, Hirschman J, Hong EL, Issel-Tarver L, Nash RS, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Weng S, Botstein D, Cherry JM. Brief Bioinform. 2004; 5 (1): 9-22
• The Gene Ontology (GO) database and informatics resource. Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, Richter J, Rubin GM, Blake JA, Bult C, Dolan M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Balakrishnan R, Cherry JM, Christie KR, Costanzo MC, Dwight SS, Engel S, Fisk DG, Hirschman JE, Hong EL, Nash RS, Sethuraman A, Theesfeld CL, Botstein D, Dolinski K, Feierbach B, Berardini T, Mundodi S, Rhee SY, Apweiler R, Barrell D, Camon E, Dimmer E, Lee V, Chisholm R, Gaudet P, Kibbe W, Kishore R, Schwarz EM, Sternberg P, Gwinn M, Hannick L, Wortman J, Berriman M, Wood V, de la Cruz N, Tonellato P, Jaiswal P, Seigfried T, White R. Nucleic Acids Res. 2004; 32 (Database issue): D258-61
• SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data. Diehn M, Sherlock G, Binkley G, Jin H, Matese JC, Hernandez-Boussard T, Rees CA, Cherry JM, Botstein D, Brown PO, Alizadeh AA. Nucleic Acids Res. 2003; 31 (1): 219-23
• A systematic approach to reconstructing transcription networks in Saccharomycescerevisiae. Wang W, Cherry JM, Botstein D, Li H. Proc Natl Acad Sci U S A. 2002; 99 (26): 16893-8
• Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes. Gutierrez RA, Ewing RM, Cherry JM, Green PJ. Proc Natl Acad Sci U S A. 2002; 99 (17): 11513-8
• Microarray data quality analysis: lessons from the AFGC project. Arabidopsis Functional Genomics Consortium. Finkelstein D, Ewing R, Gollub J, Sterky F, Cherry JM, Somerville S. Plant Mol Biol. 2002; 48 (1-2): 119-31
• Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Dwight SS, Harris MA, Dolinski K, Ball CA, Binkley G, Christie KR, Fisk DG, Issel-Tarver L, Schroeder M, Sherlock G, Sethuraman A, Weng S, Botstein D, Cherry JM. Nucleic Acids Res. 2002; 30 (1): 69-72
• Saccharomyces Genome Database. Issel-Tarver L, Christie KR, Dolinski K, Andrada R, Balakrishnan R, Ball CA, Binkley G, Dong S, Dwight SS, Fisk DG, Harris M, Schroeder M, Sethuraman A, Tse K, Weng S, Botstein D, Cherry JM. Methods Enzymol. 2002: 350 329-46
• Computer manipulation of DNA and protein sequences. Cherry JM, Curr Protoc Mol Biol. 2001: Chapter 7 Unit7.7
• Creating the gene ontology resource: design and implementation. Genome Res. 2001; 11 (8): 1425-33
• Genome comparisons highlight similarity and diversity within the eukaryotic kingdoms. Ball CA, Cherry JM. Curr Opin Chem Biol. 2001; 5 (1): 86-9
• Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data. Ball CA, Jin H, Sherlock G, Weng S, Matese JC, Andrada R, Binkley G, Dolinski K, Dwight SS, Harris MA, Issel-Tarver L, Schroeder M, Botstein D, Cherry JM. Nucleic Acids Res. 2001; 29 (1): 80-1
• The Stanford Microarray Database. Sherlock G, Hernandez-Boussard T, Kasarskis A, Binkley G, Matese JC, Dwight SS, Kaloper M, Weng S, Jin H, Ball CA, Eisen MB, Spellman PT, Brown PO, Botstein D, Cherry JM. Nucleic Acids Res. 2001; 29 (1): 152-5
• Visualization of expression clusters using Sammon's non-linear mapping. Ewing RM, Cherry JM. Bioinformatics. 2001; 17 (7): 658-9
• Comparative genomics of the eukaryotes. Rubin GM, Yandell MD, Wortman JR, Gabor Miklos GL, Nelson CR, Hariharan IK, Fortini ME, Li PW, Apweiler R, Fleischmann W, Cherry JM, Henikoff S, Skupski MP, Misra S, Ashburner M, Birney E, Boguski MS, Brody T, Brokstein P, Celniker SE, Chervitz SA, Coates D, Cravchik A, Gabrielian A, Galle RF, Gelbart WM, George RA, Goldstein LS, Gong F, Guan P, Harris NL, Hay BA, Hoskins RA, Li J, Li Z, Hynes RO, Jones SJ, Kuehl PM, Lemaitre B, Littleton JT, Morrison DK, Mungall C, O'Farrell PH, Pickeral OK, Shue C, Vosshall LB, Zhang J, Zhao Q, Zheng XH, Lewis S. Science. 2000; 287 (5461): 2204-15
• Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G. Nat Genet. 2000; 25 (1): 25-9
• Integrating functional genomic information into the Saccharomyces genome database. Ball CA, Dolinski K, Dwight SS, Harris MA, Issel-Tarver L, Kasarskis A, Scafe CR, Sherlock G, Binkley G, Jin H, Kaloper M, Orr SD, Schroeder M, Weng S, Zhu Y, Botstein D, Cherry JM. Nucleic Acids Res. 2000; 28 (1): 77-80
• The genome sequence of Drosophila melanogaster. Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, Sutton GG, Wortman JR, Yandell MD, Zhang Q, Chen LX, Brandon RC, Rogers YH, Blazej RG, Champe M, Pfeiffer BD, Wan KH, Doyle C, Baxter EG, Helt G, Nelson CR, Gabor GL, Abril JF, Agbayani A, An HJ, Andrews-Pfannkoch C, Baldwin D, Ballew RM, Basu A, Baxendale J, Bayraktaroglu L, Beasley EM, Beeson KY, Benos PV, Berman BP, Bhandari D, Bolshakov S, Borkova D, Botchan MR, Bouck J, Brokstein P, Brottier P, Burtis KC, Busam DA, Butler H, Cadieu E, Center A, Chandra I, Cherry JM, Cawley S, Dahlke C, Davenport LB, Davies P, de Pablos B, Delcher A, Deng Z, Mays AD, Dew I, Dietz SM, Dodson K, Doup LE, Downes M, Dugan-Rocha S, Dunkov BC, Dunn P, Durbin KJ, Evangelista CC, Ferraz C, Ferriera S, Fleischmann W, Fosler C, Gabrielian AE, Garg NS, Gelbart WM, Glasser K, Glodek A, Gong F, Gorrell JH, Gu Z, Guan P, Harris M, Harris NL, Harvey D, Heiman TJ, Hernandez JR, Houck J, Hostin D, Houston KA, Howland TJ, Wei MH, Ibegwam C, Jalali M, Kalush F, Karpen GH, Ke Z, Kennison JA, Ketchum KA, Kimmel BE, Kodira CD, Kraft C, Kravitz S, Kulp D, Lai Z, Lasko P, Lei Y, Levitsky AA, Li J, Li Z, Liang Y, Lin X, Liu X, Mattei B, McIntosh TC, McLeod MP, McPherson D, Merkulov G, Milshina NV, Mobarry C, Morris J, Moshrefi A, Mount SM, Moy M, Murphy B, Murphy L, Muzny DM, Nelson DL, Nelson DR, Nelson KA, Nixon K, Nusskern DR, Pacleb JM, Palazzolo M, Pittman GS, Pan S, Pollard J, Puri V, Reese MG, Reinert K, Remington K, Saunders RD, Scheeler F, Shen H, Shue BC, Sidén-Kiamos I, Simpson M, Skupski MP, Smith T, Spier E, Spradling AC, Stapleton M, Strong R, Sun E, Svirskas R, Tector C, Turner R, Venter E, Wang AH, Wang X, Wang ZY, Wassarman DA, Weinstock GM, Weissenbach J, Williams SM, WoodageT, Worley KC, Wu D, Yang S, Yao QA, Ye J, Yeh RF, Zaveri JS, Zhan M, Zhang G, Zhao Q, Zheng L, Zheng XH, Zhong FN, Zhong W, Zhou X, Zhu S, Zhu X, Smith HO, Gibbs RA, Myers EW, Rubin GM, Venter JC. Science. 2000; 287 (5461): 2185-95
• Unified display of Arabidopsis thaliana physical maps from AtDB, the A.thaliana database. Rhee SY, Weng S, Bongard-Pierce DK, García-Hernández M, Malekian A, Flanders DJ, Cherry JM. Nucleic Acids Res. 1999; 27 (1): 79-84
• Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure. Chervitz SA, Hester ET, Ball CA, Dolinski K, Dwight SS, Harris MA, Juvik G, Malekian A, Roberts S, Roe T, Scafe C, Schroeder M, Sherlock G, Weng S, Zhu Y, Cherry JM, Botstein D. Nucleic Acids Res. 1999; 27 (1): 74-8
• Arabidopsis thaliana: a model plant for genome analysis. Meinke DW, Cherry JM, Dean C, Rounsley SD, Koornneef M. Science. 1998; 282 (5389): 662, 679-82
• AtDB, the Arabidopsis thaliana database, and graphical-web-display of progress by the Arabidopsis Genome Initiative. Flanders DJ, Weng S, Petel FX, Cherry JM. Nucleic Acids Res. 1998; 26 (1): 80-4
• Comparison of the complete protein sets of worm and yeast: orthology and divergence. Chervitz SA, Aravind L, Sherlock G, Ball CA, Koonin EV, Dwight SS, Harris MA, Dolinski K, Mohr S, Smith T, Weng S, Cherry JM, Botstein D. Science. 1998; 282 (5396): 2022-8
• Expanding yeast knowledge online. Dolinski K, Ball CA, Chervitz SA, Dwight SS, Harris MA, Roberts S, Roe T, Cherry JM, Botstein D. Yeast. 1998; 14 (16): 1453-69
• Genome maps 9. Arabidopsis thaliana. Wall chart. Rhee SY, Weng S, Flanders D, Cherry JM, Dean C, Lister C, Anderson M, Koornneef M, Meinke DW, Nickle T, Smith K, Rounsley SD. Science. 1998; 282 (5389): 663-7
• SGD: Saccharomyces Genome Database. Cherry JM, Adler C, Ball C, Chervitz SA, Dwight SS, Hester ET, Jia Y, Juvik G, Roe T, Schroeder M, Weng S, Botstein D. Nucleic Acids Res. 1998; 26 (1): 73-9
• Genetic and physical maps of Saccharomyces cerevisiae. Cherry JM, Ball C, Weng S, Juvik G, Schmidt R, Adler C, Dunn B, Dwight S, Riles L, Mortimer RK, Botstein D. Nature. 1997; 387 (6632 Suppl): 67-73
• Molecular linguistics: extracting information from gene and protein sequences. Botstein D, Cherry JM. Proc Natl Acad Sci U S A. 1997; 94 (11): 5506-7
• The nucleotide sequence of Saccharomyces cerevisiae chromosome V. Dietrich FS, Mulligan J, Hennessy K, Yelton MA, Allen E, Araujo R, Aviles E, Berno A, Brennan T, Carpenter J, Chen E, Cherry JM, Chung E, Duncan M, Guzman E, Hartzell G, Hunicke-Smith S, Hyman RW, Kayser A, Komp C, Lashkari D, Lew H, Lin D, Mosedale D, Davis RW. Nature. 1997; 387 (6632 Suppl): 78-81
• The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI. Bussey H, Storms RK, Ahmed A, Albermann K, Allen E, Ansorge W, Araujo R, Aparicio A, Barrell B, Badcock K, Benes V, Botstein D, Bowman S, Brückner M, Carpenter J, Cherry JM, Chung E, Churcher C, Coster F, Davis K, Davis RW, Dietrich FS, Delius H, DiPaolo T, Hani J. Nature. 1997; 387 (6632 Suppl): 103-5
• Yeast as a model organism. Botstein D, Chervitz SA, Cherry JM. Science. 1997; 277 (5330): 1259-60
• Genetic nomenclature guide. Saccharomyces cerevisiae. Cherry JM, Trends Genet. 1995: 11-2
• Codon usage table for Xenopus laevis. Cherry JM, Methods Cell Biol. 1991: 36 675-7
• Detection of herpes simplex virus thymidine kinase and latency-associated transcript gene sequences in human herpetic corneas by polymerase chain reaction amplification. Rong BL, Pavan-Langston D, Weng QP, Martinez R, Cherry JM, Dunkel EC. Invest Ophthalmol Vis Sci. 1991; 32 (6): 1808-15
• Mutational analysis of conserved nucleotides in a self-splicing group I intron. Couture S, Ellington AD, Gerber AS, Cherry JM, Doudna JA, Green R, Hanna M, Pace U, Rajagopal J, Szostak JW. J Mol Biol. 1990; 215 (3): 345-58
• Saccharomyces cerevisiae homoserine kinase is homologous to prokaryotic homoserine kinases. Schultes NP, Ellington AD, Cherry JM, Szostak JW. Gene. 1990; 96 (2): 177-80
• Genetic dissection of an RNA enzyme. Doudna JA, Gerber AS, Cherry JM, Szostak JW. Cold Spring Harb Symp Quant Biol. 1987: 52 173-80
• The internally located telomeric sequences in the germ-line chromosomes of Tetrahymena are at the ends of transposon-like elements. Cherry JM, Blackburn EH. Cell. 1985; 43 (3 Pt 2): 747-58
• DNA termini in ciliate macronuclei. Blackburn EH, Budarf ML, Challoner PB, Cherry JM, Howard EA, Katzen AL, Pan WC, Ryan T. Cold Spring Harb Symp Quant Biol. 1983: 47 Pt 2 1195-207
• Evidence for a plasma membrane redox system on intact ascites tumor cells with different metastatic capacity. Cherry JM, Mackellar W, Morré DJ, Crane FL, Jacobsen LB, Schirrmacher V. Biochim Biophys Acta. 1981; 634 (1): 11-8