Arend Sidow

Publications

• Genome Evolution during Progression to Breast Cancer. Newburger DE, Kashef-Haghighi D, Weng Z, Salari R, Sweeney RT, Brunner AL, Zhu SX, Guo X, Varma S, Troxell ML, West RB, Batzoglou S, Sidow A. Genome Res. 2013
• The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes. Montgomery SB, Goode DL, Kvikstad E, Albers CA, Zhang ZD, Mu XJ, Ananda G, Howie B, Karczewski KJ, Smith KS, Anaya V, Richardson R, Davis J, Macarthur DG, Sidow A, Duret L, Gerstein M, Makova KD, Marchini J, McVean G, Lunter G. Genome Res. 2013; 23 (5): 749-61
• ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, Gerstein M, Gertz J, Hartemink AJ, Hoffman MM, Iyer VR, Jung YL, Karmakar S, Kellis M, Kharchenko PV, Li Q, Liu T, Liu XS, Ma L, Milosavljevic A, Myers RM, Park PJ, Pazin MJ, Perry MD, Raha D, Reddy TE, Rozowsky J, Shoresh N, Sidow A, Slattery M, Stamatoyannopoulos JA, Tolstorukov MY, White KP, Xi S, Farnham PJ, Lieb JD, Wold BJ, Snyder M. Genome Res. 2012; 22 (9): 1813-31
• Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements. Kundaje A, Kyriazopoulou-Panagiotopoulou S, Libbrecht M, Smith CL, Raha D, Winters EE, Johnson SM, Snyder M, Batzoglou S, Sidow A. Genome Res. 2012; 22 (9): 1735-47
• Determinants of nucleosome organization in primary human cells. Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, Sidow A. Nature. 2011; 474 (7352): 516-20
• Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes. Goode DL, Cooper GM, Schmutz J, Dickson M, Gonzales E, Tsai M, Karra K, Davydov E, Batzoglou S, Myers RM, Sidow A. Genome Res. 2010; 20 (3): 301-10