Mark Musen

Administrative Appointments

• Principal Investigator, National Center for Biomedical Ontology (2005 - present)
• Co-Editor-in-Chief, Applied Ontology: An International Journal of Ontological Analysis and Conceptual Modeling (2005 - present)
• Chair, Health Informatics and Modeling Topic Advisory Group, ICD Revision Steering Group, World Health Organization (2008 - present)
• Head, Stanford Center for Biomedical Informatics Research (1992 - present)
• Deputy Director for Bioinformatics, Immune Tolerance Network (2005 - 2007)
View All 7administrative appointments of Mark Musen

Honors and Awards

• Donald A. B. Lindberg Award for Innovation in Informatics, American Medical Informatics Association (2006)
• General Chair, International Semantic Web Conference (2005)
• Chair, Scientific Program Committee, American Medical Informatics Association Annual Symposium (2003)
• Elected Member, American Society for Clinical Investigation (1997)
• NSF Young Investigator Award, National Science Foundation (1992)

Professional Education

Postdoctoral Advisees

Adrien Coulet , Clement Jonquet , Paea LePendu

Graduate & Fellowship Program Affiliations

• Biomedical Informatics
• Medicine

Web Site Links

• The National Center for Biomedical Ontology

Industry Relationships

Stanford is committed to ethical and transparent interactions with our industry partners. It is our policy to disclose payments of $5,000 or more, equity valued at $5,000 or more in a publicly traded company, or any equity in a privately held company, to physicians and scientists employed by Stanford University from companies or other commercial entities with which they interact as part of their professional activities. View Full Information

Current Research Interests

The construction of automated systems to assist biomedical decision making is impeded by difficulties in formalizing knowledge and in encoding that knowledge for use by the computer. Current work in our laboratory addresses mechanisms by which computers can assist in the development of large, electronic biomedical knowledge bases. Emphasis is placed on new methods for the automated generation of computer-based tools that end-users can use to enter knowledge of specific biomedical content. In particular, we are studying:

- Development of reusable domain descriptions (ontologies) and problem-solving methods

- Automated generation of knowledge-acquisition tools from domain ontologies

- Visual metaphors to facilitate knowledge entry by application specialists

- Decision-support systems for protocol-based care

- Representation of biomedical concepts and terminologies for development of intelligent systems

The Protégé system provides a uniform infrastructure for our work on knowledge modeling and representation.

The National Center for Biomedical Ontology, supported by the NIH Roadmap, develops a new generation of technology for storing, accessing, evaluating, and using online biomedical knowledge resources.

Publications

• BioPortal: ontologies and integrated data resources at the click of a mouse. Noy NF, Shah NH, Whetzel PL, Dai B, Dorf M, Griffith N, Jonquet C, Rubin DL, Storey MA, Chute CG, Musen MA. Nucleic Acids Res. 2009; 37 (Web Server issue): W170-3
• Technology for building intelligent systems: from psychology to engineering. Musen MA, Nebr Symp Motiv. 2007: 52 145-84
• Medical informatics: searching for underlying components. Musen MA, Methods Inf Med. 2002; 41 (1): 12-9
• Scalable software architectures for decision support. Musen MA, Methods Inf Med. 1999; 38 (4-5): 229-38
• Development of large-scale functional brain networks in children. Supekar K, Musen M, Menon V. PLoS Biol. 2009; 7 (7): e1000157