- ANT-seq Ancestry inference through microfluidic multiplex PCR and targeted sequencing
- EAGLE Detection of GxE interactions in transcriptome data
- EigenMT An efficient multiple hypothesis testing correction for eQTLs
- IPF Gene Explorer A web server for investigating differential expression and splicing in idiopathic pulmonary fibrosis lung tissue.
- mmPCR-Seq Primer Design scripts
- ORegAnno: Open Regulatory Annotation Database A database of literature curated gene regulatory elements and regulatory variants.
- Path-scan A reporting tool for identifying clinically actionable variants.
- Sardinia eQTL browser Browse Sardinian eQTLs from Pala, Zappala et al.
- Sex-specific eQTL browser Browse sex-specific eQTLs from Kukurba et al.
- Sockeye, Chinook and CHuM 3D genome visualization, peer-to-peer bioinformatics and machine-learning for regulatory variation (pre-2006).
- SplicePlot A tool for visualizing splicing quantitative trait loci (sQTL).
Supplemental pages for manuscripts
- Liu et al, Genetic regulatory mechanisms of smooth muscle cells map to coronary artery disease risk loci - eQTL and sQTL summary statistics
- Pala, Zappala et al, Nature Genetics, 2017 "Individual- and population-specific regulatory variation in Sardinia" - supplemental code/info page
- Kukurba et al.,, PloS Genetics, 2013 "Allelic expression of deleterious protein-coding variants across human tissues" - supplemental info page
- Montgomery et al., Nature, 2010 "Transcriptome genetics using second generation sequencing in a Caucasian sample" - supplemental info page