Biomedical Informatics Shared Resource


About the Biomedical Informatics Shared Resource

Develop and provide the Stanford Cancer Institute Research Database (SCIRDB), integrating many data resources such as: EPIC; STRIDE; OnCore; Stanford Cancer Registry; Social Security Death Index; specialized databases in surgical pathology, radation oncology, medication, and tissue bank. 

Build cohorts using diagnoses, ICD-9/10 or ICD-O codes, and CPT billing codes. 

Perform complex searches involoving dictations and other notes, pathology reports, specimen status (via Stanford Tissue bank).

Provide a data science platform to integrate molecular/clinical data and bioinformatics pipelines with analysis tools based on R and Shiny.

Curation of existing data or add study-specific information by integrating cohort data with REDCap.

Design, build, and support diesease-specific databases: Bladder-Kidney-Testicular; Bone Marrow Transplant; Cutaneous Lymphoma; Lymphoma; Neuroendocrine.

Coordinate activities with the Biostatistics Shared Resource.

Contact

Professor of Biomedical Data Science and of Radiology (Integrative Biomedical Imaging Informatics at Stanford), of Medicine (Biomedical Informatics Research) and, by courtesy, of Ophthalmology

Do you have data-related needs?