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<title>Tiffany Chen&apos;s Blog</title>
<link rel="alternate" type="text/html" href="http://med.stanford.edu/blogs/students/tiffany_chen/" />
<modified>2009-05-14T05:48:22Z</modified>
<tagline></tagline>
<id>tag:med.stanford.edu,2009:/blogs/students/tiffany_chen//112</id>
<generator url="http://www.movabletype.org/" version="3.14">Movable Type</generator>
<copyright>Copyright (c) 2009, tjchen</copyright>
<entry>
<title>coding fail</title>
<link rel="alternate" type="text/html" href="http://med.stanford.edu/blogs/students/tiffany_chen/archives/2009/05/coding_fail.html" />
<modified>2009-05-14T05:48:22Z</modified>
<issued>2009-05-14T05:47:30Z</issued>
<id>tag:med.stanford.edu,2009:/blogs/students/tiffany_chen//112.4089</id>
<created>2009-05-14T05:47:30Z</created>
<summary type="text/plain">i hope i don&apos;t get random spam from searchbots...but i had to share my little error:...</summary>
<author>
<name>tjchen</name>
<url>http://stanford.edu/~tjchen</url>
<email>Tiff.Chen AT stanford.edu</email>
</author>

<content type="text/html" mode="escaped" xml:lang="en" xml:base="http://med.stanford.edu/blogs/students/tiffany_chen/">
<![CDATA[<p>i hope i don't get random spam from searchbots...but i had to share my little error:</p>]]>
<![CDATA[<p><br />
pythong md.py -if 1FW4_cold.rvc<br />
-bash: pythong: command not found</p>]]>
</content>
</entry>
<entry>
<title>Long time, no blog.</title>
<link rel="alternate" type="text/html" href="http://med.stanford.edu/blogs/students/tiffany_chen/archives/2009/04/long_time_no_bl.html" />
<modified>2009-04-29T00:38:37Z</modified>
<issued>2009-04-28T23:51:11Z</issued>
<id>tag:med.stanford.edu,2009:/blogs/students/tiffany_chen//112.4029</id>
<created>2009-04-28T23:51:11Z</created>
<summary type="text/plain">I haven&apos;t blogged in a while. Although I could discuss all the different types of research I&apos;ve been doing, or the amount of work we&apos;ve all been putting in for being TAs, i&apos;m going to focus instead on random things...</summary>
<author>
<name>tjchen</name>
<url>http://stanford.edu/~tjchen</url>
<email>Tiff.Chen AT stanford.edu</email>
</author>
<dc:subject>Everyday</dc:subject>
<content type="text/html" mode="escaped" xml:lang="en" xml:base="http://med.stanford.edu/blogs/students/tiffany_chen/">
<![CDATA[<p>I haven't blogged in a while.  Although I could discuss all the different types of research I've been doing, or the amount of work we've all been putting in for being TAs, i'm going to focus instead on random things I've cooked in the last month--mostly simple dishes, but still, for some random reason, i decided to take pictures.</p>]]>
<![CDATA[<p>in an effort to be less frivolous with money, as well as improve my relatively poor skills at cooking, the efforts in the last month are available below.<br />
Shepherd's pie, layer of ground beef w/ onions and peas (with beef broth and homeade demi-glace, courtesy of a friend), covered with a layer of mashed carrots, covered with a layer of mashed potatoes, covered with cheese.<br />
<img alt="food1.jpg" src="http://med.stanford.edu/blogs/students/tiffany_chen/archives/food1.jpg" width="400" height="261" /></p>

<p>Chinese sausage with fresh bamboo shoot, chinese green beans sauteed in garlic and "hairy gourd" with ginger and marinated wine.<br />
<img alt="food2.jpg" src="http://med.stanford.edu/blogs/students/tiffany_chen/archives/food2.jpg" width="400" height="300" /></p>

<p>Spicy sausage, diced tomatoes & heavy cream, and spinach with farfalle pasta.<br />
<img alt="food3.jpg" src="http://med.stanford.edu/blogs/students/tiffany_chen/archives/food3.jpg" width="300" height="400" /></p>

<p>Mini cupcakes. not from scratch. ::COUGH:: mix ::COUGH::<br />
<img alt="food4.jpg" src="http://med.stanford.edu/blogs/students/tiffany_chen/archives/food4.jpg" width="400" height="327" /></p>

<p>Cinnamon streusel muffin (not from scratch). I realize that not from scratch is often tasty, and not too bad (enter gasp here)<br />
<img alt="food5.jpg" src="http://med.stanford.edu/blogs/students/tiffany_chen/archives/food5.jpg" width="400" height="300" /></p>

<p>Back to work...</p>]]>
</content>
</entry>
<entry>
<title>workin</title>
<link rel="alternate" type="text/html" href="http://med.stanford.edu/blogs/students/tiffany_chen/archives/2008/11/workin.html" />
<modified>2008-11-05T09:17:02Z</modified>
<issued>2008-11-05T09:14:27Z</issued>
<id>tag:med.stanford.edu,2008:/blogs/students/tiffany_chen//112.3753</id>
<created>2008-11-05T09:14:27Z</created>
<summary type="text/plain">Well, time has caught up with me and I have realized that I need to write more. After this quarter is over, if this blog is still going, I&apos;ll try to document more of what is going on in my...</summary>
<author>
<name>tjchen</name>
<url>http://stanford.edu/~tjchen</url>
<email>Tiff.Chen AT stanford.edu</email>
</author>
<dc:subject>Everyday</dc:subject>
<content type="text/html" mode="escaped" xml:lang="en" xml:base="http://med.stanford.edu/blogs/students/tiffany_chen/">
<![CDATA[<p>Well, time has caught up with me and I have realized that I need to write more.  After this quarter is over, if this blog is still going, I'll try to document more of what is going on in my life.</p>]]>
<![CDATA[<p>Right now, it's mainly a lot of schoolwork, and I haven't been as dedicated as I hoped to be to my research project.  BCATS, stanford's Biomedical Computation at Stanford Conference went well, and I was glad to be a part of the planning committee this year.</p>

<p>For now, however, I should sleep...tomorrow involves a lot of work...</p>

<p>Also, as a side note: I'm from Ohio.  The election this time around was especially nerve-wracking.</p>]]>
</content>
</entry>
<entry>
<title>Workin hard</title>
<link rel="alternate" type="text/html" href="http://med.stanford.edu/blogs/students/tiffany_chen/archives/2008/08/workin_hard.html" />
<modified>2008-08-07T05:32:45Z</modified>
<issued>2008-08-07T05:30:15Z</issued>
<id>tag:med.stanford.edu,2008:/blogs/students/tiffany_chen//112.3607</id>
<created>2008-08-07T05:30:15Z</created>
<summary type="text/plain">So I am in the lab, working on research (FINALLY! I&apos;ve had a rough few weeks) and my friend Bryan sends me a message. We start discussing, and he realizes that when he googles tiffany chen, my stanford website pops...</summary>
<author>
<name>tjchen</name>
<url>http://stanford.edu/~tjchen</url>
<email>Tiff.Chen AT stanford.edu</email>
</author>

<content type="text/html" mode="escaped" xml:lang="en" xml:base="http://med.stanford.edu/blogs/students/tiffany_chen/">
<![CDATA[<p>So I am in the lab, working on research (FINALLY! I've had a rough few weeks) and my friend <a href="http://www.physics.upenn.edu/~chb/ ">Bryan</a> sends me a message.  We start discussing, and he realizes that when he googles tiffany chen, my <a href="http://www.stanford.edu/~tjchen">stanford website</a> pops up as 3rd on the list.</p>]]>
<![CDATA[<p>This has led us to decide to link ourselves on the internet as much as we can.  Who knew that a few links would bump us so high on Google search?</p>]]>
</content>
</entry>
<entry>
<title>What the heck is wrong with my leg?</title>
<link rel="alternate" type="text/html" href="http://med.stanford.edu/blogs/students/tiffany_chen/archives/2008/07/what_the_heck_i.html" />
<modified>2008-07-10T06:47:01Z</modified>
<issued>2008-07-10T06:42:11Z</issued>
<id>tag:med.stanford.edu,2008:/blogs/students/tiffany_chen//112.3575</id>
<created>2008-07-10T06:42:11Z</created>
<summary type="text/plain">Just got back from the NLM training conference, which was at the NIH near DC this year. The whole trip was great, because the BMI-ers were able to hang out a bit before and during the conference. With this fun,...</summary>
<author>
<name>tjchen</name>
<url>http://stanford.edu/~tjchen</url>
<email>Tiff.Chen AT stanford.edu</email>
</author>
<dc:subject>Everyday</dc:subject>
<content type="text/html" mode="escaped" xml:lang="en" xml:base="http://med.stanford.edu/blogs/students/tiffany_chen/">
<![CDATA[<p>Just got back from the NLM training conference, which was at the NIH near DC this year.  The whole trip was great, because the BMI-ers were able to hang out a bit before and during the conference.  With this fun, however, comes a price.</p>]]>
<![CDATA[<p>For the last two days, I started getting a sharp pain in my leg, along the shin.  I thought it was shin splints, and that it would go away after a few days, but today the pain got so great that I was hobbling around and walking at an incredibly slow rate.  Maybe I'm just weak, but I have never felt so much pain in my leg before.  I guess it's kind of comparable to a charlie horse, but not along the muscle.</p>

<p>Oh well, tomorrow to the doctor it is.  The doctor today on the phone sounded a little perplexed, as well as everyone else I have asked for advice.</p>

<p>Here goes nothing...</p>]]>
</content>
</entry>
<entry>
<title>Impractical insomnia.</title>
<link rel="alternate" type="text/html" href="http://med.stanford.edu/blogs/students/tiffany_chen/archives/2008/06/impractical_ins.html" />
<modified>2008-06-30T10:35:32Z</modified>
<issued>2008-06-30T10:23:40Z</issued>
<id>tag:med.stanford.edu,2008:/blogs/students/tiffany_chen//112.3562</id>
<created>2008-06-30T10:23:40Z</created>
<summary type="text/plain">I should not have coffee. Why oh why did I drink coffee?!...</summary>
<author>
<name>tjchen</name>
<url>http://stanford.edu/~tjchen</url>
<email>Tiff.Chen AT stanford.edu</email>
</author>
<dc:subject>Everyday</dc:subject>
<content type="text/html" mode="escaped" xml:lang="en" xml:base="http://med.stanford.edu/blogs/students/tiffany_chen/">
<![CDATA[<p>I should not have coffee.  Why oh why did I drink coffee?!</p>]]>
<![CDATA[<p>For most people I know, coffee is a mild stimulant that they imbibe in copious amounts in order to desperately stay awake.</p>

<p>For me, coffee makes my brain and heart race, my appetite continuous, my stomach a little queasy, and my emotions a little crazy.</p>

<p>Senior year of college, I was up to about 4-5 cups of coffee a day.  I cut myself off, however, and switched to tea when I arrived here.</p>

<p>Occasionally, I still have coffee.  One example of this is today.  I had one and a half cups.  Hence, why I am blogging at 2:30 in the a.m. Coffee...ah, coffee...it keeps me very awake, and a little disturbing if you are with me at the time.  Today, the limited amount made me a little jumpy.</p>

<p>I don't feel ready for bed.</p>

<p>I really do have a lot of work to do tomorrow.</p>

<p>I came home about half an hour ago, and began to ponder what types of sleep aids I have in the apartment.  Musing over the items in the cabinets, I went over to the fridge and looked at a bottle of wine that my old roomate left before she moved. I grabbed the cork for a second, and thought...nahhhh and put the bottle back.</p>

<p>What else do people use to sleep?</p>

<p>Warm milk, sleeping pills, soothing lavender...all of these things I do not have in my apartment.</p>

<p>I have instead, foods that are high in sugar content, tea, and</p>

<p>...coffee.</p>

<p>Oh well, I shall try to sleep now in the hopes that tomorrow I will not feel extremely exhausted.</p>

<p>Remind me not to have coffee.</p>]]>
</content>
</entry>
<entry>
<title>Choosing a Lab</title>
<link rel="alternate" type="text/html" href="http://med.stanford.edu/blogs/students/tiffany_chen/archives/2008/06/choosing_a_lab.html" />
<modified>2008-06-17T18:26:05Z</modified>
<issued>2008-06-17T18:19:13Z</issued>
<id>tag:med.stanford.edu,2008:/blogs/students/tiffany_chen//112.3539</id>
<created>2008-06-17T18:19:13Z</created>
<summary type="text/plain">I have not chosen a lab yet. Most of the BMI first years have, but I&apos;m in a pickle. It is a luxury, I know. All of the labs I have rotated are great, but I still don&apos;t feel right...</summary>
<author>
<name>tjchen</name>
<url>http://stanford.edu/~tjchen</url>
<email>Tiff.Chen AT stanford.edu</email>
</author>
<dc:subject>Academics</dc:subject>
<content type="text/html" mode="escaped" xml:lang="en" xml:base="http://med.stanford.edu/blogs/students/tiffany_chen/">
<![CDATA[<p>I have not chosen a lab yet.</p>

<p>Most of the BMI first years have, but I'm in a pickle.  It is a luxury, I know.  All of the labs I have rotated are great, but I still don't feel right choosing one.  An excerpt from my confusion lies below, in a gtalk chat with my friend David.</p>]]>
<![CDATA[<p><strong>Tiffany:</strong> Dude<br />
</t> I DREAMED<br />
</t> about choosing a lab<br />
</t> IN A FOOD METAPHOR<br />
<strong>David: </strong>...<br />
<strong>David:</strong> lol<br />
</t> that's hilarious<br />
<strong>Tiffany: </strong>yeah no dude<br />
</t> i was like<br />
</t> tasting this dish and trying to decide which components were better<br />
<strong>David: </strong>carrot or banana?<br />
<strong>Tiffany:</strong> Hahahha<br />
</t> no it was like<br />
</t> an elaborate plate<br />
</t> and then i was done tasting and i realized i ate everything </t> except some of the mashed potatoes<br />
<strong>David:</strong> lol<br />
<strong>Tiffany:</strong> and i had a preferred chef<br />
<strong>David:</strong> leave the starch out of ur life<br />
<strong>Tiffany:</strong> Hahahhaha<br />
<strong>David:</strong> so, you've decided.. congrats<br />
=)<br />
<strong>Tiffany:</strong> no!<br />
</t> HAhahahhaa<br />
</t> i woke up more confused<br />
</t> lol<br />
<strong>David:</strong> go with what the food told you<br />
food never lies<br />
<strong>Tiffany:</strong> because i can't remember which chef was which<br />
</t>and then i remember talking about the chefs and their pantries<br />
</t>ohhhh<br />
</t>but<br />
</t>hmmm<br />
</t>maybe<br />
</t>noooo<br />
</t>DAG NABBIT<br />
</t>I DON'T KNOW WHICH CHEF I PICKED<br />
</p>]]>
</content>
</entry>
<entry>
<title>IT IS SO HOT</title>
<link rel="alternate" type="text/html" href="http://med.stanford.edu/blogs/students/tiffany_chen/archives/2008/05/it_is_so_hot.html" />
<modified>2008-05-17T08:17:40Z</modified>
<issued>2008-05-17T08:12:31Z</issued>
<id>tag:med.stanford.edu,2008:/blogs/students/tiffany_chen//112.3502</id>
<created>2008-05-17T08:12:31Z</created>
<summary type="text/plain">My goodness, it has reached an incredible 99 degrees here. It&apos;s not as bad as North Carolina (HUMIDITY), but not having air conditioning means that sleeping at night semi sucks....</summary>
<author>
<name>tjchen</name>
<url>http://stanford.edu/~tjchen</url>
<email>Tiff.Chen AT stanford.edu</email>
</author>
<dc:subject>Everyday</dc:subject>
<content type="text/html" mode="escaped" xml:lang="en" xml:base="http://med.stanford.edu/blogs/students/tiffany_chen/">
<![CDATA[<p>My goodness, it has reached an incredible 99 degrees here.  It's not as bad as North Carolina (HUMIDITY), but not having air conditioning means that sleeping at night semi sucks.</p>]]>
<![CDATA[<p>I wish I had a pool.</p>

<p>I just got something given to me in the last day that is just incredibly huge for me, and I feel super super undeserving, and now this weekend i will try to do work and live up to expectations.</p>

<p>And eat food.</p>

<p>I really worry...I think that people think I'm much more capable than I am because I really try to discuss a breadth of information.  In reality , however, I feel really insecure about my capabilities to go in depth for a topic, which is what a PhD is.</p>

<p>Today was great.  After a long day of meetings and whatnot, we went to Rick Myer's farewell bbq.  I remember emailing him a long time ago to inquire into possibly working for him, only to find out that he is leaving for Huntsville Alabama, where one of my best friends Sailaja lives.</p>

<p>After the bbq, a few of us got together to watch grey's, and then I drove to Sarah's to pick up her and Adele.  We then went to Cupertino for frozen yogurt, but ended up going into a chinese restaurant (advertised as a potsticker place, but really just another restaurant), having a second dinner, and then going to Yogurtland.</p>

<p>It was a festive evening.  I will put up the one or two pictures I took. I'm so bad about putting them in my blog...<br />
</p>]]>
</content>
</entry>
<entry>
<title>Job/Internships</title>
<link rel="alternate" type="text/html" href="http://med.stanford.edu/blogs/students/tiffany_chen/archives/2008/05/jobinternships.html" />
<modified>2008-05-03T00:59:21Z</modified>
<issued>2008-05-03T00:49:29Z</issued>
<id>tag:med.stanford.edu,2008:/blogs/students/tiffany_chen//112.3463</id>
<created>2008-05-03T00:49:29Z</created>
<summary type="text/plain">I used to have a job blog, but that went semi defunct. Hence, here are the latest and the greatest findings in the computational biomedical community... Notice that the @ is replaced with AT...</summary>
<author>
<name>tjchen</name>
<url>http://stanford.edu/~tjchen</url>
<email>Tiff.Chen AT stanford.edu</email>
</author>
<dc:subject>Jobs/Internships</dc:subject>
<content type="text/html" mode="escaped" xml:lang="en" xml:base="http://med.stanford.edu/blogs/students/tiffany_chen/">
<![CDATA[<p>I used to have a job blog, but that went semi defunct.</p>

<p>Hence, here are the latest and the greatest findings in the computational biomedical community...</p>

<p>Notice that the @ is replaced with AT</p>]]>
<![CDATA[<p>Genomic Health Business Development Analyst Summer Intern Description </p>

<p>Genomic Health, a dynamic and growing company in the personalized medicine space, is seeking a Business Development Analyst summer intern. The intern will report to the Associate Director, Business Development. Together, the intern and manager will define and implement a business relevant project, likely requiring cross-functional interactions. The intern will also be responsible for general business development support activities for the department. The intern will be required to give a final presentation at the conclusion of the project. This should be an excellent opportunity for the enthusiastic, smart candidate to develop an understanding about the business development role, and build experience in a commercial organization.  </p>

<p>Requirements:</p>

<p>    * Current undergraduate or masters student with an interest in life science and business<br />
    * Available approximately June through August 2008<br />
    * Excellent GPA, preferably in coursework related to biology, molecular biology, accounting, market strategy, entrepreneurship and other related curriculum.<br />
    * Excellent writer and communicator. Numerate, with ability to synthesize and analyze complex information. Very thorough and detail-oriented.</p>

<p> <br />
Contact:  Stephanie Ogawa</p>

<p>sogawa AT genomichealth.com</p>

<p>650-569-2865</p>

<p>--------------------</p>

<p>iRhythm Technologies, Inc., a San Francsico-based medtech company founded by a former Biodesign Fellow, is offering an interesting summer internship for the summer of 2008.  iRhythm is developing a novel device and software system for use in the evaluation of patients with cardiac problems.  The products and systems will serve significant existing and emerging market opportunities.  The position revolves around the development and refinement of the company’s primary product, which is scheduled for market introduction later this year. The culture is of the company is fast-moving, dynamic, demanding, and exciting.  A seasoned management team that is geared to results will provide an excellent learning opportunity for product developers and entrepreneurs alike.  iRhythm seeks an motivated and hard-working individual with good hands-on skills, who is geared towards the achievement of results.  Candidates should be working towards a Bachelor of Science degree in Computer Engineering or Computer Science, Biomechanical Engineering, or Product Design.</p>

<p>Anticipated responsibilities will include design of components, prototyping and testing, protocol writing, and participation in various  research studies.  The position will require original thinking and the application of design principles in a cross-functional, multi-disciplinary environment to help develop iRhythm’s new and innovative product.  iRhythm is located in the SOMA district of San Francisco, just a few blocks from CalTrain, 280, and 101.</p>

<p>Contact: send CV and cover letter to Uday N. Kumar, MD at uday AT irhythmtech.com</p>

<p>--------------------</p>

<p>Position Title: R&D Engineer Internship<br />
 <br />
Department:     R&D<br />
 <br />
Contact:        Mike Carley (Director of R&D)<br />
                Phone:  408-617-0770 x103<br />
                E-mail:  mcarley AT revascular.com<br />
 <br />
Original Issue Date:             04-21-08<br />
                                                                                                                                                                                               </p>

<p>PURPOSE OF JOB:          Use mechanical engineering and/or electrical engineering knowledge to design and develop innovative medical devices or components/subsystems in support of company’s strategic plan.<br />
 <br />
MAJOR DUTIES AND RESPONSIBILITIES:<br />
 Apply mechanical and/or electrical engineering knowledge to the design and development of medical devices.<br />
 </p>

<p>    * Solve mechanical and/or electrical engineering problems at the component through system level. <br />
    *  Conduct testing utilizing existing test protocols and develop new protocols as needed. <br />
    *  Generate written reports. <br />
    *  Complete projects in a manner consistent with corporate objectives.<br />
    *  Maintain accurate documentation of concepts, designs, drawings, and processes. <br />
    *  Oversee outside vendors as required. <br />
    *  Maintain QSR systems, including pre-production quality assurance procedures, pre-clinical testing programs, and post production QSR compliance in coordination with the Document Control, Clinical, and Quality Assurance functions. <br />
    *  Work with other engineering, manufacturing, clinical affairs, sales and marketing, and quality assurance staff to coordinate pilot production of new products.  <br />
    *  Support company goals and objectives, policies and procedures, QSR, and FDA regulations. </p>

<p> <br />
EDUCATION REQUIREMENTS: ME or EE- Graduate or Student<br />
 <br />
EXPERIENCE REQUIREMENTS:  None<br />
 <br />
OTHER QUALIFICATIONS:  Working knowledge of SolidWorks is valuable.</p>

<p>This job description is not all inclusive.   Incumbents may be required to complete other miscellaneous responsibilities as required. </p>

<p>--------------------</p>

<p>Contact:</p>

<p>Francisco M. De La Vega, PhD.<br />
Scientific Fellow & Sr. Director<br />
SOLiD Applications and Bioinformatics<br />
Molecular and Cellular Biology R&D<br />
Applied Biosystems<br />
850 Lincoln Centre Dr.<br />
Foster City, CA 94404</p>

<p>Tel. 1-650-638-6989<br />
Fax. 1-650-554-2577</p>

<p> Bioinformatics Summer Internship<br />
 Next-Generation Sequencing Applications<br />
 Req No. 08-21133</p>

<p><br />
 Major Responsibilities:<br />
 The successful candidate will work on the development and<br />
 optimization of de novo DNA sequence assembly algorithms to handle<br />
 data from our next-generation, high throughput DNA sequencing<br />
 platform that generates 100s of millions of short sequencing reads<br />
 (25-50bp in length). More specifically, the project involves<br />
 adapting assembly algorithms to leverage the accuracy inherent in<br />
 the di-base reads of the SOLiD™ System. Incorporating the<br />
 information provided by paired-read libraries of different insert<br />
 sizes, and possibly small amounts of longer Sanger sequencing<br />
 reads, would be essential. The candidate will generate different<br />
 simulated data sets to test and improve the new algorithms. Working<br />
 closely with the members of the software development and<br />
 bioinformatics teams, the candidate will also test the new<br />
 algorithm implementations with real SOLiD sequencing data of small<br />
 genomes.</p>

<p> Skills/Knowledge Requirements:<br />
 This position requires the knowledge and skills normally acquired<br />
 through completion of a BS/BA degree in Applied Mathematics,<br />
 Computer Science, Statistics, or related field, and 1-2 years of<br />
 postgraduate training in a relevant area (e.g bioinformatics,<br />
 computational biology, MS/PhD programs). To qualify, the candidate<br />
 must have demonstrated computer-programming skills, such as C/C++/<br />
 Java and/or scripting languages (e.g. Perl, BioPerl, Phyton), and<br />
 algorithm development experience, in particular related to DNA<br />
 sequence analysis or assembly algorithms. A good understanding of<br />
 bioinformatics algorithms, sequence analysis tools, familiarity<br />
 with UNIX/Linux environment, and an appreciation of the use of<br />
 statistical methods in the interpretation of biological data are<br />
 highly desirable. Experience/good knowledge of molecular biology<br />
 and sequencing methods is a plus.</p>

<p> ======================================</p>

<p> Bioinformatics Summer Internship<br />
 Next-Generation Sequencing Applications<br />
 Req No. 08-21240</p>

<p><br />
 Major Responsibilities:<br />
 The Position will be responsible for creating an analysis pipeline<br />
 for analysisof microbial resequencing results from the SOLiD<br />
 system. The pipeline willintegrate of the shelf components (either<br />
 already existing as part of the SOLiDAnalysis Tools, or as third<br />
 party tools). They will integrate these to create asmooth workflow<br />
 with minimal customer inputs. The final pipeline will then<br />
 bepackaged so that it can be distributed via the SOftware<br />
 community. The positionwill also create the required documentation<br />
 (in conjunction with the internaldevelopment team). The candidate<br />
 will be working with a highly motivated bioinformatics<br />
 andbiological analysis team.</p>

<p> Skills/Knowledge Requirements:<br />
 The candidate should be proficient in Java and scripting languages<br />
 (preferablyPERL or Python) in a UNIX environment, knowledge of<br />
 Matlab or C++ may also be ofuse.The ideal Candidate will have<br />
 software engineering skills, with previouslydemonstrated<br />
 application to biological (especially sequence based) analysis.<br />
 Anapplicant with a biological background who can demonstrate<br />
 significant softwareskills would also be considered.<br />
</p>]]>
</content>
</entry>
<entry>
<title>Celebratory...changes?</title>
<link rel="alternate" type="text/html" href="http://med.stanford.edu/blogs/students/tiffany_chen/archives/2008/05/celebratorychan.html" />
<modified>2008-05-02T07:40:13Z</modified>
<issued>2008-05-02T07:33:03Z</issued>
<id>tag:med.stanford.edu,2008:/blogs/students/tiffany_chen//112.3462</id>
<created>2008-05-02T07:33:03Z</created>
<summary type="text/plain">Dinner was great--ended up being 16 people at Buca&apos;s, and then we went to fraiche afterwards. The pictures are on facebook, yay! Since it was my special day, I treated myself to...a talk. Heh, I decided to go to a...</summary>
<author>
<name>tjchen</name>
<url>http://stanford.edu/~tjchen</url>
<email>Tiff.Chen AT stanford.edu</email>
</author>
<dc:subject>Everyday</dc:subject>
<content type="text/html" mode="escaped" xml:lang="en" xml:base="http://med.stanford.edu/blogs/students/tiffany_chen/">
<![CDATA[<p>Dinner was great--ended up being 16 people at Buca's, and then we went to fraiche afterwards.  The pictures are on facebook, yay!  Since it was my special day, I treated myself to...a talk. Heh, I decided to go to a talk by Martha Bulyk, who is at Harvard Systems Biology and a really great researcher/speaker.  I made a total fool of myself when I interviewed with her...</p>

<p>I am up now, however, because i can't sleep.</p>]]>
<![CDATA[<p>I went to bed an hour ago, and instead my mind is swimming with all the things i need to do, and i'm finally getting excited about the new lab and thinking that maybe i actually have the ability to do this project.  I just finished working with Atul (and wished I had gotten more done), but I know that I've gotten to know the lab (really great people) and I should move to the next project.  Now I'm starting with Serafim. The computational problem and the biological problem are both completely foreign to me, so we will see how this goes.  I'm so excited to learn it, however.  </p>

<p>i played squash for the first time today with Sarah, Annie and Karen--I highly recommend it.  I've never played racquetball, but it's similar.  Apparently playing squash ruins your tennis game, and vice versa.  So far, the only thing I can do decently is serve in squash, and my backhand kind of sucks because i'm afraid of scraping the wall.  It's a great workout, though.</p>

<p>semi full weekend--trying to keep saturday open for getting work done, since I have a lot of stuff next week.</p>

<p>I'm so grateful for all the people I have met here, and the friends I have made at home and in college.  It is great knowing that at 3 a.m., you can always call someone up and have a philosophical discussion that includes everything...from the serious to completely trivial matters, such as mucus.</p>

<p>Not that mucus is trivial.</p>

<p>Just saying...mucus is inherently amusing and disgusting at the same time. </p>]]>
</content>
</entry>
<entry>
<title>Awesome</title>
<link rel="alternate" type="text/html" href="http://med.stanford.edu/blogs/students/tiffany_chen/archives/2008/04/awesome.html" />
<modified>2008-04-30T05:37:43Z</modified>
<issued>2008-04-30T05:12:44Z</issued>
<id>tag:med.stanford.edu,2008:/blogs/students/tiffany_chen//112.3459</id>
<created>2008-04-30T05:12:44Z</created>
<summary type="text/plain">Well, I&apos;m at MSOB because I figured I would try to get work done before tomorrow, which I am taking &quot;off&quot; for part of the day. Sort of, not really. having lunch with Elissa, and treating myself to the fact...</summary>
<author>
<name>tjchen</name>
<url>http://stanford.edu/~tjchen</url>
<email>Tiff.Chen AT stanford.edu</email>
</author>
<dc:subject>About Me</dc:subject>
<content type="text/html" mode="escaped" xml:lang="en" xml:base="http://med.stanford.edu/blogs/students/tiffany_chen/">
<![CDATA[<p>Well, I'm at MSOB because I figured I would try to get work done before tomorrow, which I am taking "off" for part of the day.  Sort of, not really.</p>

<p>having lunch with Elissa, and treating myself to the fact that I want to go to a talk by Martha Bulyk, because she's super cool....</p>]]>
<![CDATA[<p>Wow, I'm sad HAHA.</p>

<p>However, I wanted to blog because I realized that when you post your birthday on facebook, it's pretty amazing because at 9 p.m. everyone on the east coast starts to post to your wall and you start feeling loved.</p>

<p>FROM INTERNET PEOPLE.</p>

<p>But they are real people.</p>

<p>We have this weird meta-existence on the internet.  Facebook is certainly a venue for this.</p>]]>
</content>
</entry>
<entry>
<title>Awesome morning</title>
<link rel="alternate" type="text/html" href="http://med.stanford.edu/blogs/students/tiffany_chen/archives/2008/03/awesome_morning.html" />
<modified>2008-03-19T05:41:39Z</modified>
<issued>2008-03-19T05:24:01Z</issued>
<id>tag:med.stanford.edu,2008:/blogs/students/tiffany_chen//112.3350</id>
<created>2008-03-19T05:24:01Z</created>
<summary type="text/plain">I had to document this, and I&apos;m not sure if anyone will find it particularly interesting, but this made my morning. I wake up, and as soon as I sit up my phone rings. I will not document the time...</summary>
<author>
<name>tjchen</name>
<url>http://stanford.edu/~tjchen</url>
<email>Tiff.Chen AT stanford.edu</email>
</author>
<dc:subject>Everyday</dc:subject>
<content type="text/html" mode="escaped" xml:lang="en" xml:base="http://med.stanford.edu/blogs/students/tiffany_chen/">
<![CDATA[<p>I had to document this, and I'm not sure if anyone will find it particularly interesting, but this made my morning.  I wake up, and as soon as I sit up my phone rings.  I will not document the time at which I woke up, for the simple fact that I am ashamed.</p>]]>
<![CDATA[<p>Me: (groggy) "Hello?"</p>

<p>Mar: "T CHENNNNNNNNNN!!!"</p>

<p>Me: "Marium"!</p>

<p>Mar: "T Chen are you sleeping?"</p>

<p>Mar: "No Marium, I just got up...(hears laughter in the background) whoa who's there?"</p>

<p>So Karen's in Ohio (I'm from Ohio, and these are my best most awesome friends from home), so she and Marium are with Prasanthi and her sister...sigh I miss them. :(</p>

<p>After I hang up, though, the following ensues:</p>

<p>::BEEP::</p>

<p>Text #1: We miss you pal good luck this week!" (accompanied by some weird picture of marium flashing what only can be interpreted as gangster signs)</p>

<p>I chuckle amusedly, and then I reply and then prepare for my day.</p>

<p>::BEEP::</p>

<p>Text #2: check your facebook prasanthi sent you kind of a strange message and after she sent it karen sent you another one trying to take credit for it.  this is the</p>

<p>The text stops here.  I will imagine that either one of the other girls wrestled the phone away from her, or by accident she only sent part of it.</p>

<p>I decide to go take a shower.  Upon my return, I see this:</p>

<p>Text #3: this is for real, marium now.  the opposite is the truth.  karen wrote the 1st msg. :) Bye!!</p>

<p>So in my confusion, I didn't have time to check facebook, and I went to have lunch with my father.  The text messages sat in the back of my head, however....which one was real?  Was the last message karen trying to mess with me and pretend to be someone else?  or was the first one right?  Who knows? THE SUSPENSE BUILDS.</p>

<p>Not until late afternoon, however, when I had access to facebook again, did I realize...oh I should check my wall!</p>

<p>I notice, as documented in my phone, two posts.</p>

<p>At least they didn't lie.</p>

<p>Post 1.<br />
tiffany, you are such a good friend to me. I think it's okay that you are a man and an alcoholic. I like you just the way you are. Have you told all of your friends your real name? Just in case, it's Armando. Now the world knows. talk to you soon!</p>

<p>Great.</p>

<p>Now everyone knows my nickname from high school.</p>

<p>Post 2.<br />
One guess as to who the true author of the previous post is.<br />
Here's a clue. Her name starts with K and ends with aren.</p>

<p>AHA!</p>

<p>So the second text message WAS A LIE!</p>

<p>LIES!  IT IS ALL LIES!!!  OH THE HUMANITY.</p>

<p>By the way, I am not a man.</p>

<p>And I'm not an alcoholic.</p>

<p>karen's actually the one who is a man.</p>

<p>just kidding, karen.  please don't come to california and attack me.</p>

<p>This has been my day, besides the eating food with family and trying to get these projects/papers/presentation done.</p>

<p>I have to write a LOT of pages in the next 2 days.  Wish me luck.</p>

<p>Ah, the little things in life...</p>]]>
</content>
</entry>
<entry>
<title>SIGCSE 2008</title>
<link rel="alternate" type="text/html" href="http://med.stanford.edu/blogs/students/tiffany_chen/archives/2008/03/sigcse_2008.html" />
<modified>2008-03-16T06:14:04Z</modified>
<issued>2008-03-16T05:56:26Z</issued>
<id>tag:med.stanford.edu,2008:/blogs/students/tiffany_chen//112.3341</id>
<created>2008-03-16T05:56:26Z</created>
<summary type="text/plain">DR. RODGER IS AWESOME! She did a great job this year. I will elaborate more about this soon, since I am working on a lot of stuff right now, but the computer science education conference was excellent....</summary>
<author>
<name>tjchen</name>
<url>http://stanford.edu/~tjchen</url>
<email>Tiff.Chen AT stanford.edu</email>
</author>
<dc:subject>Academics</dc:subject>
<content type="text/html" mode="escaped" xml:lang="en" xml:base="http://med.stanford.edu/blogs/students/tiffany_chen/">
<![CDATA[<p>DR. RODGER IS AWESOME!</p>

<p>She did a great job this year.  I will elaborate more about this soon, since I am working on a lot of stuff right now, but the computer science  education conference was excellent.</p>]]>
<![CDATA[<p>I am in Portland right now, and yesterday we helped run a session on peer led team learning.  Here are some of the leaders:</p>

<p><img alt="2008_0314_SIGCSE2008_ 043.JPG" src="http://med.stanford.edu/blogs/students/tiffany_chen/archives/2008_0314_SIGCSE2008_ 043.JPG" width="480" height="340" /></p>

<p>The picture is a bit large--I'll edit it shortly and put up others.</p>

<p>I crashed the volunteer dinner yesterday--i have some amazing pictures from the games we played--they're spectacularly nerdy but awesome at the same time.  Stay tuned.  One was angels and devils.  If you want to see the pictures, those who know me can check facebook.</p>

<p>But YAYYYY I got to see Joanna! <br />
Saw Professors Astrachan, Forbes, and Duvall as well...it was great!  I finally got a copy of the CS unplugged book.  There are some really interesting things on their website, if people are interested.</p>

<p>I even got to see Dave, Dan, and Daniel, and all the other great students from Duke/Other schools.  I will give more details in a bit.  However, SIGCSE is a great opportunity to meet more people interested in teaching and who really get the foundations of what we want to teach in computer science.</p>

<p>Tonight I saw Danny, one of my awesome amazing spectacular friends from college today, and we went on a food spree with her best friend Joel.  And when I mean food spree...anyways.  I'll put up photos.</p>

<p>More to come in a bit...</p>]]>
</content>
</entry>
<entry>
<title>Learning a new language</title>
<link rel="alternate" type="text/html" href="http://med.stanford.edu/blogs/students/tiffany_chen/archives/2008/03/learning_a_new.html" />
<modified>2008-03-09T07:47:48Z</modified>
<issued>2008-03-09T07:17:28Z</issued>
<id>tag:med.stanford.edu,2008:/blogs/students/tiffany_chen//112.3279</id>
<created>2008-03-09T07:17:28Z</created>
<summary type="text/plain">ARRRRRRRRRRRRRRRRRGHHHHHHHHHHHHHHHHHHHHHHHHH!!!!!!! Okay so apparently in RMySQL you have a difference between SendQuery and GetQuery, such that you have to do something after you do SendQuery. I don&apos;t know if that makes any sense, but I have wasted many hours on...</summary>
<author>
<name>tjchen</name>
<url>http://stanford.edu/~tjchen</url>
<email>Tiff.Chen AT stanford.edu</email>
</author>
<dc:subject>Academics</dc:subject>
<content type="text/html" mode="escaped" xml:lang="en" xml:base="http://med.stanford.edu/blogs/students/tiffany_chen/">
<![CDATA[<p>ARRRRRRRRRRRRRRRRRGHHHHHHHHHHHHHHHHHHHHHHHHH!!!!!!!</p>

<p>Okay so apparently in RMySQL you have a difference between SendQuery and GetQuery, such that you have to do something after you do SendQuery.</p>

<p>I don't know if that makes any sense, but I have wasted many hours on this.</p>]]>
<![CDATA[<p>I need to put up pictures from the retreat.  In all of my laziness, I have yet to do this.</p>

<p>The quarter is quickly coming to a screeching halt, and I feel like there's not enough to do everything that I want to do.</p>

<p>Next week there's Atul's <a href="http://www.amia.org/meetings/stb08/">Translational Bioinformatics SUMMIT</a>, which will be held in SF.</p>

<p>Unfortunately I'm not going...too many meetings that would have to be canceled, etc.  Plus we have an exam on Wednesdsay in his class.  Tuesday is the BMI 211 presentation, and then I have to leave on Thursday for <a href="http://www.cs.duke.edu/sigcse08/ ">SIGCSE 2008</a> in Portland, which Dr. Rodger (of Duke awesomeness) is in charge of this year.</p>

<p>I'm so excited!</p>

<p>Not only do I get to see Joanna, and Dr. Rodger, but all of my old computer science processors and my friend Danny, who is currently living in the area.</p>

<p>I'll have to figure out how to get research done during this time as well...</p>

<p>Oh well, one day at a time, right?</p>

<p>Man, I miss dancing.</p>]]>
</content>
</entry>
<entry>
<title>Really Cool Virus...</title>
<link rel="alternate" type="text/html" href="http://med.stanford.edu/blogs/students/tiffany_chen/archives/2008/03/really_cool_vir.html" />
<modified>2008-03-08T05:53:52Z</modified>
<issued>2008-03-08T05:52:17Z</issued>
<id>tag:med.stanford.edu,2008:/blogs/students/tiffany_chen//112.3278</id>
<created>2008-03-08T05:52:17Z</created>
<summary type="text/plain">This is pretty cool, especially for those people who like the mac....</summary>
<author>
<name>tjchen</name>
<url>http://stanford.edu/~tjchen</url>
<email>Tiff.Chen AT stanford.edu</email>
</author>

<content type="text/html" mode="escaped" xml:lang="en" xml:base="http://med.stanford.edu/blogs/students/tiffany_chen/">
<![CDATA[<p>This is pretty cool, especially for those people who like the mac.</p>]]>
<![CDATA[<p>Well, Friday night and I'm going to do research.  Why?  Because I'm really excited and want to do it.</p>

<p>I don't know if that's sad, or dedicated, but I've been playing on facebook and youtube so perhaps my dedication is waning.</p>

<p><br />
<object width="425" height="355"><param name="movie" value="http://www.youtube.com/v/aBJQ5085kSo"></param><param name="wmode" value="transparent"></param><embed src="http://www.youtube.com/v/aBJQ5085kSo" type="application/x-shockwave-flash" wmode="transparent" width="425" height="355"></embed></object></p>]]>
</content>
</entry>

</feed>